Wall clock time and date at job start Wed Apr 1 2020 03:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.46910 * 2 1 4 4 O 1.45192 * 109.47182 * 120.00145 * 2 1 3 5 5 C 1.34239 * 116.99989 * 270.00330 * 4 2 1 6 6 O 1.20828 * 119.99682 * 359.97438 * 5 4 2 7 7 C 1.50698 * 119.99857 * 180.02562 * 5 4 2 8 8 C 1.50700 * 109.46776 * 180.02562 * 7 5 4 9 9 C 1.38258 * 120.03353 * 269.97903 * 8 7 5 10 10 C 1.38105 * 119.93471 * 180.02562 * 9 8 7 11 11 C 1.38498 * 120.21578 * 0.02562 * 10 9 8 12 12 C 1.38213 * 119.84727 * 359.69157 * 11 10 9 13 13 C 1.38103 * 120.03401 * 90.00085 * 8 7 5 14 14 C 1.51370 * 109.75460 * 179.81202 * 12 11 10 15 15 C 1.54347 * 105.23875 * 343.22134 * 14 12 11 16 16 C 1.51369 * 130.38972 * 179.97438 * 11 10 9 17 17 C 1.50699 * 109.47447 * 240.00633 * 2 1 3 18 18 O 1.21282 * 119.99863 * 256.02468 * 17 2 1 19 19 N 1.34777 * 120.00267 * 76.02165 * 17 2 1 20 20 C 1.46492 * 120.00056 * 5.36432 * 19 17 2 21 21 C 1.46507 * 119.99814 * 185.36551 * 19 17 2 22 22 C 1.50700 * 109.46980 * 90.00106 * 21 19 17 23 23 H 1.07996 * 120.00002 * 359.97438 * 22 21 19 24 24 C 1.37872 * 119.99948 * 179.97438 * 22 21 19 25 25 N 1.31512 * 120.00104 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00059 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47176 * 60.00353 * 26 24 22 28 28 H 1.48504 * 109.47162 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.47360 * 300.00290 * 26 24 22 30 30 H 1.09002 * 109.46704 * 186.13226 * 1 2 3 31 31 H 1.08999 * 109.47431 * 306.13503 * 1 2 3 32 32 H 1.09002 * 109.47298 * 66.13939 * 1 2 3 33 33 H 1.09001 * 109.47320 * 60.00436 * 7 5 4 34 34 H 1.08996 * 109.47054 * 299.99750 * 7 5 4 35 35 H 1.08002 * 120.02796 * 0.04347 * 9 8 7 36 36 H 1.08004 * 119.88641 * 179.97438 * 10 9 8 37 37 H 1.07996 * 119.89005 * 359.97438 * 13 8 7 38 38 H 1.09007 * 110.46612 * 224.17835 * 14 12 11 39 39 H 1.08996 * 110.15764 * 102.11239 * 14 12 11 40 40 H 1.08992 * 110.82436 * 267.88942 * 15 14 12 41 41 H 1.09008 * 110.98985 * 144.41687 * 15 14 12 42 42 H 1.08999 * 110.30186 * 316.11230 * 16 11 10 43 43 H 1.09001 * 110.30291 * 78.26026 * 16 11 10 44 44 H 1.09008 * 109.46755 * 84.82277 * 20 19 17 45 45 H 1.08994 * 109.47362 * 204.82195 * 20 19 17 46 46 H 1.08996 * 109.47155 * 324.82581 * 20 19 17 47 47 H 1.08997 * 109.46910 * 210.00408 * 21 19 17 48 48 H 1.08998 * 109.47110 * 330.00444 * 21 19 17 49 49 H 0.97000 * 120.00325 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0139 -0.6845 1.1855 5 6 2.2170 0.0640 2.2811 6 8 1.9980 1.2519 2.2503 7 6 2.7192 -0.5770 3.5491 8 6 2.8608 0.4729 4.6208 9 6 4.0543 1.1553 4.7677 10 6 4.1820 2.1167 5.7508 11 6 3.1182 2.3998 6.5913 12 6 1.9233 1.7218 6.4406 13 6 1.7988 0.7543 5.4575 14 6 0.9276 2.2043 7.4736 15 6 1.7707 2.9377 8.5383 16 6 3.0041 3.3915 7.7291 17 6 2.0324 -0.7103 -1.2305 18 8 2.4737 -1.8365 -1.1429 19 7 1.9912 -0.0939 -2.4284 20 6 1.5689 1.3059 -2.5178 21 6 2.3689 -0.8240 -3.6411 22 6 1.1507 -1.4917 -4.2254 23 1 0.1913 -1.3834 -3.7416 24 6 1.2611 -2.2407 -5.3776 25 7 2.4295 -2.3731 -5.9665 26 14 -0.2487 -3.0689 -6.1014 27 1 -1.2642 -2.0392 -6.4389 28 1 0.1340 -3.8089 -7.3308 29 1 -0.8163 -4.0175 -5.1098 30 1 -0.3633 -1.0218 0.1098 31 1 -0.3634 0.6060 0.8299 32 1 -0.3634 0.4157 -0.9398 33 1 3.6884 -1.0399 3.3631 34 1 2.0104 -1.3373 3.8773 35 1 4.8858 0.9367 4.1140 36 1 5.1149 2.6490 5.8651 37 1 0.8668 0.2210 5.3422 38 1 0.4039 1.3598 7.9218 39 1 0.2151 2.8909 7.0166 40 1 2.0614 2.2572 9.3386 41 1 1.2325 3.7968 8.9388 42 1 3.8983 3.3576 8.3515 43 1 2.8515 4.3981 7.3397 44 1 2.4228 1.9560 -2.3267 45 1 1.1773 1.5043 -3.5155 46 1 0.7924 1.4991 -1.7777 47 1 2.7862 -0.1282 -4.3690 48 1 3.1137 -1.5802 -3.3929 49 1 2.5072 -2.9004 -6.7770 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729653028.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:39 Heat of formation + Delta-G solvation = -100.897438 kcal Electronic energy + Delta-G solvation = -29479.021400 eV Core-core repulsion = 25370.818106 eV Total energy + Delta-G solvation = -4108.203294 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.87722 -40.20913 -38.92023 -36.78207 -35.94964 -34.88506 -32.88542 -32.46686 -31.60829 -30.78823 -28.22896 -27.79423 -26.86543 -26.05465 -24.43280 -23.08123 -22.58123 -21.26062 -21.13079 -20.05246 -18.80301 -17.87624 -16.80023 -16.58571 -16.43580 -16.25628 -15.91672 -15.77558 -15.32415 -15.09032 -14.91753 -14.57251 -14.26898 -13.77665 -13.51115 -13.29257 -13.19041 -13.15295 -12.92528 -12.67108 -12.37291 -12.30965 -12.12612 -12.06935 -11.98725 -11.72908 -11.57233 -11.51159 -11.40424 -11.23861 -11.19703 -11.00363 -10.94116 -10.70002 -10.57777 -10.49242 -10.18927 -9.68787 -8.99384 -8.91292 -8.65895 -8.46176 -7.72821 -6.07198 -4.12711 1.01384 1.18351 2.18444 2.54261 3.23444 3.30314 3.34941 3.38562 3.50429 3.93586 4.03711 4.22660 4.40054 4.41625 4.61899 4.68419 4.74660 4.77727 4.88329 4.91152 5.07012 5.08793 5.13284 5.21266 5.27208 5.27915 5.31263 5.34007 5.43202 5.45583 5.53175 5.55970 5.69107 5.72939 5.77571 5.82504 5.86158 5.93570 6.08187 6.16095 6.23953 6.32384 6.39062 6.45858 6.76351 6.98373 7.39075 7.45936 7.74975 7.88685 8.18410 8.28788 8.82723 8.97874 9.52350 11.00821 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.028673 B = 0.001862 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.279910 B =15035.601905 C =15211.951583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.071 3.929 3 H 0.102 0.898 4 O -0.327 6.327 5 C 0.460 3.540 6 O -0.503 6.503 7 C -0.073 4.073 8 C -0.074 4.074 9 C -0.101 4.101 10 C -0.106 4.106 11 C -0.097 4.097 12 C -0.098 4.098 13 C -0.089 4.089 14 C -0.082 4.082 15 C -0.120 4.120 16 C -0.083 4.083 17 C 0.510 3.490 18 O -0.521 6.521 19 N -0.597 5.597 20 C 0.074 3.926 21 C 0.246 3.754 22 C -0.530 4.530 23 H 0.058 0.942 24 C 0.062 3.938 25 N -0.893 5.893 26 Si 0.899 3.101 27 H -0.277 1.277 28 H -0.286 1.286 29 H -0.276 1.276 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.125 0.875 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.047 0.953 45 H 0.080 0.920 46 H 0.059 0.941 47 H 0.036 0.964 48 H 0.046 0.954 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.571 11.669 27.377 29.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.012 3.988 3 H 0.120 0.880 4 O -0.242 6.242 5 C 0.303 3.697 6 O -0.391 6.391 7 C -0.110 4.110 8 C -0.074 4.074 9 C -0.119 4.119 10 C -0.124 4.124 11 C -0.097 4.097 12 C -0.098 4.098 13 C -0.107 4.107 14 C -0.119 4.119 15 C -0.158 4.158 16 C -0.120 4.120 17 C 0.294 3.706 18 O -0.396 6.396 19 N -0.330 5.330 20 C -0.070 4.070 21 C 0.127 3.873 22 C -0.569 4.569 23 H 0.076 0.924 24 C -0.141 4.141 25 N -0.532 5.532 26 Si 0.727 3.273 27 H -0.202 1.202 28 H -0.211 1.211 29 H -0.201 1.201 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.105 0.895 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.143 0.857 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.098 0.902 44 H 0.066 0.934 45 H 0.099 0.901 46 H 0.077 0.923 47 H 0.054 0.946 48 H 0.064 0.936 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.308 11.332 27.185 29.454 hybrid contribution -0.872 -0.276 -0.754 1.186 sum -1.180 11.056 26.430 28.674 Atomic orbital electron populations 1.22154 0.92172 1.04087 1.03744 1.22650 0.96012 0.97343 0.82751 0.88048 1.86632 1.76491 1.41519 1.19587 1.23630 0.74614 0.86042 0.85451 1.90664 1.47720 1.16497 1.84186 1.20280 1.05088 0.97561 0.88065 1.19125 0.94432 0.97800 0.96008 1.20912 0.97277 0.95901 0.97784 1.20555 0.98249 0.98186 0.95411 1.20600 0.94099 0.97608 0.97377 1.20497 0.95809 0.96477 0.97040 1.20431 0.98029 0.97441 0.94784 1.21043 0.96757 1.00042 0.94097 1.22290 0.95877 1.00245 0.97373 1.21054 0.98847 0.97720 0.94354 1.19776 0.80181 0.86831 0.83803 1.90693 1.45175 1.18414 1.85352 1.48080 1.65299 1.11908 1.07731 1.21828 0.98990 0.82673 1.03523 1.19365 0.96686 0.92066 0.79174 1.21386 0.94772 1.31588 1.09180 0.92411 1.24938 0.96277 0.96119 0.96726 1.69920 1.23209 1.40374 1.19688 0.86541 0.82753 0.79627 0.78396 1.20224 1.21136 1.20141 0.90647 0.91325 0.89520 0.86414 0.86576 0.85721 0.86132 0.86229 0.90694 0.90217 0.90968 0.90549 0.90756 0.90210 0.93446 0.90072 0.92268 0.94639 0.93565 0.92585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.19 37.16 0.34 -2.05 16 2 C 0.07 1.21 2.14 -27.89 -0.06 1.15 16 3 H 0.10 1.61 6.31 -51.93 -0.33 1.28 16 4 O -0.33 -5.46 9.47 -45.77 -0.43 -5.90 16 5 C 0.46 6.50 7.92 36.00 0.29 6.79 16 6 O -0.50 -8.07 15.25 -18.75 -0.29 -8.35 16 7 C -0.07 -0.74 5.94 -29.04 -0.17 -0.91 16 8 C -0.07 -0.78 4.37 -104.66 -0.46 -1.24 16 9 C -0.10 -1.03 9.70 -39.62 -0.38 -1.42 16 10 C -0.11 -1.01 10.04 -39.53 -0.40 -1.41 16 11 C -0.10 -0.91 6.14 -104.21 -0.64 -1.55 16 12 C -0.10 -0.95 6.14 -104.21 -0.64 -1.59 16 13 C -0.09 -0.91 9.70 -39.54 -0.38 -1.29 16 14 C -0.08 -0.58 6.77 -26.85 -0.18 -0.77 16 15 C -0.12 -0.69 7.08 -25.33 -0.18 -0.87 16 16 C -0.08 -0.56 6.77 -26.85 -0.18 -0.74 16 17 C 0.51 11.06 6.95 -10.99 -0.08 10.99 16 18 O -0.52 -13.58 16.13 -13.54 -0.22 -13.79 16 19 N -0.60 -12.82 2.86 -182.96 -0.52 -13.35 16 20 C 0.07 1.18 9.79 59.84 0.59 1.77 16 21 C 0.25 6.43 5.18 -5.19 -0.03 6.41 16 22 C -0.53 -14.91 9.39 -34.44 -0.32 -15.23 16 23 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 24 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 25 N -0.89 -26.40 13.29 55.43 0.74 -25.67 16 26 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 28 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 29 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.09 1.21 6.33 -51.93 -0.33 0.88 16 33 H 0.12 1.01 8.09 -51.93 -0.42 0.59 16 34 H 0.12 0.93 8.08 -51.93 -0.42 0.51 16 35 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 36 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 37 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.08 0.33 8.14 -51.92 -0.42 -0.09 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.05 0.67 8.14 -51.92 -0.42 0.24 16 45 H 0.08 1.30 8.03 -51.93 -0.42 0.88 16 46 H 0.06 0.80 4.92 -51.93 -0.26 0.55 16 47 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 48 H 0.05 1.37 7.35 -51.93 -0.38 0.98 16 49 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 407.28 15.07 6.14 6.14 Total: -1.00 -35.36 407.28 -10.18 -45.54 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -7.59 Total: -0.98 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -2.99 Total: -0.31 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.21 Total: -39.01 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: -0.94 Total: -28.04 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.36 -10.18 -45.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729653028.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.354 kcal (2) G-P(sol) polarization free energy of solvation -35.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds