Wall clock time and date at job start Wed Apr 1 2020 03:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.46910 * 2 1 4 4 O 1.45192 * 109.47182 * 120.00145 * 2 1 3 5 5 C 1.34239 * 116.99989 * 270.00330 * 4 2 1 6 6 O 1.20828 * 119.99682 * 359.97438 * 5 4 2 7 7 C 1.50698 * 119.99857 * 180.02562 * 5 4 2 8 8 C 1.50700 * 109.46776 * 180.02562 * 7 5 4 9 9 C 1.38258 * 120.03353 * 269.97903 * 8 7 5 10 10 C 1.38105 * 119.93471 * 180.02562 * 9 8 7 11 11 C 1.38498 * 120.21578 * 0.02562 * 10 9 8 12 12 C 1.38213 * 119.84727 * 359.69157 * 11 10 9 13 13 C 1.38103 * 120.03401 * 90.00085 * 8 7 5 14 14 C 1.51370 * 109.75460 * 179.81202 * 12 11 10 15 15 C 1.54347 * 105.23875 * 343.22134 * 14 12 11 16 16 C 1.51369 * 130.38972 * 179.97438 * 11 10 9 17 17 C 1.50699 * 109.47447 * 240.00633 * 2 1 3 18 18 O 1.21282 * 119.99863 * 256.02468 * 17 2 1 19 19 N 1.34777 * 120.00267 * 76.02165 * 17 2 1 20 20 C 1.46492 * 120.00056 * 5.36432 * 19 17 2 21 21 C 1.46507 * 119.99814 * 185.36551 * 19 17 2 22 22 C 1.50700 * 109.46980 * 90.00106 * 21 19 17 23 23 H 1.07996 * 120.00002 * 359.97438 * 22 21 19 24 24 C 1.37872 * 119.99948 * 179.97438 * 22 21 19 25 25 N 1.31512 * 120.00104 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00059 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47176 * 60.00353 * 26 24 22 28 28 H 1.48504 * 109.47162 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.47360 * 300.00290 * 26 24 22 30 30 H 1.09002 * 109.46704 * 186.13226 * 1 2 3 31 31 H 1.08999 * 109.47431 * 306.13503 * 1 2 3 32 32 H 1.09002 * 109.47298 * 66.13939 * 1 2 3 33 33 H 1.09001 * 109.47320 * 60.00436 * 7 5 4 34 34 H 1.08996 * 109.47054 * 299.99750 * 7 5 4 35 35 H 1.08002 * 120.02796 * 0.04347 * 9 8 7 36 36 H 1.08004 * 119.88641 * 179.97438 * 10 9 8 37 37 H 1.07996 * 119.89005 * 359.97438 * 13 8 7 38 38 H 1.09007 * 110.46612 * 224.17835 * 14 12 11 39 39 H 1.08996 * 110.15764 * 102.11239 * 14 12 11 40 40 H 1.08992 * 110.82436 * 267.88942 * 15 14 12 41 41 H 1.09008 * 110.98985 * 144.41687 * 15 14 12 42 42 H 1.08999 * 110.30186 * 316.11230 * 16 11 10 43 43 H 1.09001 * 110.30291 * 78.26026 * 16 11 10 44 44 H 1.09008 * 109.46755 * 84.82277 * 20 19 17 45 45 H 1.08994 * 109.47362 * 204.82195 * 20 19 17 46 46 H 1.08996 * 109.47155 * 324.82581 * 20 19 17 47 47 H 1.08997 * 109.46910 * 210.00408 * 21 19 17 48 48 H 1.08998 * 109.47110 * 330.00444 * 21 19 17 49 49 H 0.97000 * 120.00325 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0139 -0.6845 1.1855 5 6 2.2170 0.0640 2.2811 6 8 1.9980 1.2519 2.2503 7 6 2.7192 -0.5770 3.5491 8 6 2.8608 0.4729 4.6208 9 6 4.0543 1.1553 4.7677 10 6 4.1820 2.1167 5.7508 11 6 3.1182 2.3998 6.5913 12 6 1.9233 1.7218 6.4406 13 6 1.7988 0.7543 5.4575 14 6 0.9276 2.2043 7.4736 15 6 1.7707 2.9377 8.5383 16 6 3.0041 3.3915 7.7291 17 6 2.0324 -0.7103 -1.2305 18 8 2.4737 -1.8365 -1.1429 19 7 1.9912 -0.0939 -2.4284 20 6 1.5689 1.3059 -2.5178 21 6 2.3689 -0.8240 -3.6411 22 6 1.1507 -1.4917 -4.2254 23 1 0.1913 -1.3834 -3.7416 24 6 1.2611 -2.2407 -5.3776 25 7 2.4295 -2.3731 -5.9665 26 14 -0.2487 -3.0689 -6.1014 27 1 -1.2642 -2.0392 -6.4389 28 1 0.1340 -3.8089 -7.3308 29 1 -0.8163 -4.0175 -5.1098 30 1 -0.3633 -1.0218 0.1098 31 1 -0.3634 0.6060 0.8299 32 1 -0.3634 0.4157 -0.9398 33 1 3.6884 -1.0399 3.3631 34 1 2.0104 -1.3373 3.8773 35 1 4.8858 0.9367 4.1140 36 1 5.1149 2.6490 5.8651 37 1 0.8668 0.2210 5.3422 38 1 0.4039 1.3598 7.9218 39 1 0.2151 2.8909 7.0166 40 1 2.0614 2.2572 9.3386 41 1 1.2325 3.7968 8.9388 42 1 3.8983 3.3576 8.3515 43 1 2.8515 4.3981 7.3397 44 1 2.4228 1.9560 -2.3267 45 1 1.1773 1.5043 -3.5155 46 1 0.7924 1.4991 -1.7777 47 1 2.7862 -0.1282 -4.3690 48 1 3.1137 -1.5802 -3.3929 49 1 2.5072 -2.9004 -6.7770 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729653028.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:38 Heat of formation + Delta-G solvation = -119.162467 kcal Electronic energy + Delta-G solvation = -29479.813431 eV Core-core repulsion = 25370.818106 eV Total energy + Delta-G solvation = -4108.995325 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.01514 -41.06056 -40.44536 -37.86640 -36.82115 -36.67547 -34.86859 -33.43915 -32.80435 -31.52907 -29.72438 -28.86107 -27.65825 -27.49588 -26.02061 -24.50731 -23.51567 -22.40240 -21.67202 -20.89031 -20.39755 -19.06257 -18.69811 -18.16488 -17.50148 -17.38380 -17.05101 -16.71161 -16.58190 -16.25863 -15.97301 -15.95759 -15.62119 -14.94117 -14.72631 -14.28802 -14.15960 -14.08719 -14.01242 -13.70612 -13.67907 -13.57737 -13.39429 -13.32677 -13.18635 -13.04520 -12.81915 -12.65645 -12.55555 -12.53209 -12.20932 -12.20207 -12.01647 -11.94601 -11.79363 -11.74483 -11.67039 -11.55728 -10.65164 -10.64405 -9.70733 -9.54271 -9.35463 -8.23428 -6.38550 0.26339 0.46441 1.07736 1.35644 1.37719 1.42055 1.48710 1.58619 2.31670 2.43028 2.80932 3.06621 3.38241 3.40171 3.58937 3.66914 3.72804 3.81259 3.88328 4.05184 4.12375 4.19271 4.26275 4.29386 4.46816 4.50825 4.55039 4.56615 4.57129 4.61742 4.74060 4.80511 4.83573 4.90934 4.93428 4.95711 5.05411 5.08047 5.18114 5.19610 5.27621 5.33310 5.35133 5.48209 5.50412 5.58895 5.70251 5.77046 6.02238 6.07552 6.51485 6.65417 6.69937 7.17845 7.34707 8.83921 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.028673 B = 0.001862 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.279910 B =15035.601905 C =15211.951583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.081 3.919 3 H 0.118 0.882 4 O -0.344 6.344 5 C 0.462 3.538 6 O -0.523 6.523 7 C -0.067 4.067 8 C -0.088 4.088 9 C -0.117 4.117 10 C -0.118 4.118 11 C -0.108 4.108 12 C -0.113 4.113 13 C -0.103 4.103 14 C -0.084 4.084 15 C -0.116 4.116 16 C -0.083 4.083 17 C 0.501 3.499 18 O -0.577 6.577 19 N -0.601 5.601 20 C 0.067 3.933 21 C 0.258 3.742 22 C -0.546 4.546 23 H 0.058 0.942 24 C 0.008 3.992 25 N -0.927 5.927 26 Si 0.969 3.031 27 H -0.259 1.259 28 H -0.280 1.280 29 H -0.277 1.277 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.133 0.867 34 H 0.139 0.861 35 H 0.131 0.869 36 H 0.136 0.864 37 H 0.129 0.871 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.090 0.910 47 H 0.030 0.970 48 H 0.000 1.000 49 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.309 13.032 29.030 31.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.023 3.977 3 H 0.135 0.865 4 O -0.261 6.261 5 C 0.306 3.694 6 O -0.411 6.411 7 C -0.104 4.104 8 C -0.088 4.088 9 C -0.134 4.134 10 C -0.135 4.135 11 C -0.108 4.108 12 C -0.113 4.113 13 C -0.121 4.121 14 C -0.121 4.121 15 C -0.153 4.153 16 C -0.120 4.120 17 C 0.288 3.712 18 O -0.457 6.457 19 N -0.333 5.333 20 C -0.074 4.074 21 C 0.138 3.862 22 C -0.584 4.584 23 H 0.077 0.923 24 C -0.192 4.192 25 N -0.567 5.567 26 Si 0.793 3.207 27 H -0.183 1.183 28 H -0.205 1.205 29 H -0.202 1.202 30 H 0.085 0.915 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.151 0.849 34 H 0.157 0.843 35 H 0.149 0.851 36 H 0.154 0.846 37 H 0.147 0.853 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.111 0.889 42 H 0.104 0.896 43 H 0.102 0.898 44 H 0.089 0.911 45 H 0.099 0.901 46 H 0.108 0.892 47 H 0.048 0.952 48 H 0.019 0.981 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.061 12.753 28.856 31.615 hybrid contribution -0.254 -0.644 -1.214 1.397 sum -2.315 12.109 27.642 30.267 Atomic orbital electron populations 1.22153 0.90017 1.04157 1.05183 1.22496 0.97354 0.96871 0.80994 0.86475 1.86651 1.76926 1.42429 1.20054 1.24358 0.73713 0.85840 0.85474 1.90645 1.48723 1.17355 1.84392 1.20412 1.06253 0.97797 0.85933 1.19230 0.94837 0.98326 0.96387 1.21140 0.97616 0.96325 0.98362 1.20830 0.99173 0.98201 0.95337 1.21020 0.93921 0.97983 0.97899 1.20900 0.96760 0.96266 0.97357 1.20666 0.98371 0.97947 0.95111 1.21125 0.96527 1.00534 0.93885 1.22317 0.95212 1.00829 0.96931 1.21138 0.99936 0.97193 0.93765 1.20645 0.79042 0.86402 0.85100 1.90654 1.47620 1.21042 1.86371 1.48070 1.64932 1.13772 1.06504 1.22137 1.00943 0.79666 1.04691 1.18872 0.95259 0.91286 0.80814 1.21667 0.95158 1.32081 1.09523 0.92329 1.25879 0.99489 0.96641 0.97154 1.70046 1.25410 1.41068 1.20155 0.85443 0.79039 0.78721 0.77467 1.18323 1.20473 1.20226 0.91550 0.88922 0.88691 0.84919 0.84335 0.85081 0.84619 0.85323 0.89796 0.90016 0.90378 0.88857 0.89632 0.89754 0.91050 0.90053 0.89174 0.95223 0.98148 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.30 9.19 71.98 0.66 -3.64 16 2 C 0.08 2.68 2.14 29.85 0.06 2.75 16 3 H 0.12 3.49 6.31 -2.39 -0.02 3.48 16 4 O -0.34 -11.34 9.47 -45.30 -0.43 -11.77 16 5 C 0.46 12.59 7.92 71.24 0.56 13.15 16 6 O -0.52 -16.09 15.25 21.96 0.33 -15.76 16 7 C -0.07 -1.29 5.94 29.10 0.17 -1.11 16 8 C -0.09 -1.79 4.37 -19.89 -0.09 -1.88 16 9 C -0.12 -2.32 9.70 22.24 0.22 -2.11 16 10 C -0.12 -2.15 10.04 22.30 0.22 -1.93 16 11 C -0.11 -1.90 6.14 -19.60 -0.12 -2.02 16 12 C -0.11 -2.04 6.14 -19.60 -0.12 -2.16 16 13 C -0.10 -2.01 9.70 22.30 0.22 -1.80 16 14 C -0.08 -1.04 6.77 30.52 0.21 -0.83 16 15 C -0.12 -1.05 7.08 31.50 0.22 -0.83 16 16 C -0.08 -0.97 6.77 30.51 0.21 -0.76 16 17 C 0.50 22.08 6.95 87.66 0.61 22.69 16 18 O -0.58 -31.37 16.13 15.22 0.25 -31.13 16 19 N -0.60 -26.04 2.86 -851.14 -2.43 -28.48 16 20 C 0.07 2.06 9.79 127.77 1.25 3.31 16 21 C 0.26 14.03 5.18 85.63 0.44 14.47 16 22 C -0.55 -31.17 9.39 25.60 0.24 -30.93 16 23 H 0.06 3.26 7.81 -2.91 -0.02 3.23 16 24 C 0.01 0.44 5.46 84.65 0.46 0.90 16 25 N -0.93 -55.93 13.29 21.44 0.28 -55.64 16 26 Si 0.97 44.44 29.54 68.60 2.03 46.46 16 27 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 28 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 29 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 30 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.09 2.41 6.33 -2.39 -0.02 2.39 16 33 H 0.13 2.13 8.09 -2.39 -0.02 2.11 16 34 H 0.14 2.00 8.08 -2.39 -0.02 1.98 16 35 H 0.13 2.29 8.06 -2.91 -0.02 2.26 16 36 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 37 H 0.13 2.13 8.06 -2.91 -0.02 2.11 16 38 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 39 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 42 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 45 H 0.08 2.50 8.03 -2.39 -0.02 2.48 16 46 H 0.09 2.20 4.92 -2.39 -0.01 2.18 16 47 H 0.03 1.62 8.07 -2.39 -0.02 1.60 16 48 H 0.00 0.02 7.35 -2.39 -0.02 0.01 16 49 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -78.95 407.28 6.41 -72.54 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: 0.95 Total: 16.48 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: 5.43 Total: 7.28 kcal Atomic # 7 Polarization: -81.97 SS G_CDS: -2.15 Total: -84.12 kcal Atomic # 8 Polarization: -58.80 SS G_CDS: 0.15 Total: -58.65 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -78.95 6.41 -72.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729653028.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.622 kcal (2) G-P(sol) polarization free energy of solvation -78.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds