Wall clock time and date at job start Wed Apr 1 2020 03:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46837 * 2 1 4 4 O 1.45192 * 109.46685 * 120.00547 * 2 1 3 5 5 C 1.34237 * 117.00025 * 269.99540 * 4 2 1 6 6 O 1.20830 * 119.99608 * 0.02562 * 5 4 2 7 7 C 1.50696 * 120.00220 * 180.02562 * 5 4 2 8 8 C 1.52999 * 109.46868 * 185.44878 * 7 5 4 9 9 H 1.08995 * 110.26691 * 308.49947 * 8 7 5 10 10 C 1.54339 * 110.30805 * 70.68515 * 8 7 5 11 11 C 1.54343 * 102.39710 * 145.26602 * 10 8 7 12 12 C 1.51374 * 105.16637 * 333.65117 * 11 10 8 13 13 C 1.38501 * 130.38585 * 197.17261 * 12 11 10 14 14 C 1.38105 * 120.21195 * 180.02562 * 13 12 11 15 15 C 1.38254 * 119.93293 * 359.97248 * 14 13 12 16 16 C 1.38095 * 119.93858 * 359.97438 * 15 14 13 17 17 C 1.38219 * 109.75763 * 17.19531 * 12 11 10 18 18 C 1.50699 * 109.47060 * 240.00350 * 2 1 3 19 19 O 1.21280 * 120.00025 * 255.43054 * 18 2 1 20 20 N 1.34771 * 120.00162 * 75.42480 * 18 2 1 21 21 C 1.46505 * 119.99997 * 5.13764 * 20 18 2 22 22 C 1.46506 * 120.00065 * 185.12724 * 20 18 2 23 23 C 1.50704 * 109.46540 * 90.00737 * 22 20 18 24 24 H 1.07996 * 120.00250 * 359.97438 * 23 22 20 25 25 C 1.37873 * 119.99624 * 179.97438 * 23 22 20 26 26 N 1.31519 * 120.00162 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 120.00144 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.47149 * 60.00327 * 27 25 23 29 29 H 1.48495 * 109.47458 * 180.02562 * 27 25 23 30 30 H 1.48499 * 109.47198 * 300.00357 * 27 25 23 31 31 H 1.09005 * 109.46938 * 55.45523 * 1 2 3 32 32 H 1.08998 * 109.47089 * 175.45439 * 1 2 3 33 33 H 1.08995 * 109.47197 * 295.45664 * 1 2 3 34 34 H 1.08998 * 109.46916 * 305.44280 * 7 5 4 35 35 H 1.08997 * 109.47623 * 65.44324 * 7 5 4 36 36 H 1.09002 * 110.82162 * 263.49326 * 10 8 7 37 37 H 1.08997 * 110.82310 * 27.03961 * 10 8 7 38 38 H 1.08997 * 110.30746 * 214.72782 * 11 10 8 39 39 H 1.09000 * 110.30213 * 92.56966 * 11 10 8 40 40 H 1.07992 * 119.89096 * 0.02745 * 13 12 11 41 41 H 1.07997 * 120.02931 * 179.97438 * 14 13 12 42 42 H 1.08005 * 120.02705 * 180.02562 * 15 14 13 43 43 H 1.08007 * 119.89423 * 180.02562 * 16 15 14 44 44 H 1.08993 * 109.47314 * 92.34498 * 21 20 18 45 45 H 1.09004 * 109.46904 * 212.34407 * 21 20 18 46 46 H 1.08993 * 109.46939 * 332.33767 * 21 20 18 47 47 H 1.09005 * 109.47042 * 210.00247 * 22 20 18 48 48 H 1.08994 * 109.47491 * 330.00589 * 22 20 18 49 49 H 0.97001 * 119.99887 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0139 -0.6846 1.1855 5 6 2.2171 0.0639 2.2811 6 8 1.9974 1.2516 2.2506 7 6 2.7192 -0.5772 3.5491 8 6 2.7347 0.4602 4.6736 9 1 3.2655 1.3566 4.3530 10 6 1.2931 0.8118 5.0979 11 6 1.4426 1.0473 6.6159 12 6 2.6400 0.2186 7.0292 13 6 3.0478 -0.2063 8.2828 14 6 4.1932 -0.9654 8.4207 15 6 4.9356 -1.3031 7.3044 16 6 4.5301 -0.8813 6.0535 17 6 3.3825 -0.1186 5.9132 18 6 2.0324 -0.7103 -1.2305 19 8 2.4836 -1.8325 -1.1412 20 7 1.9801 -0.0986 -2.4303 21 6 1.5407 1.2959 -2.5230 22 6 2.3629 -0.8281 -3.6418 23 6 1.1510 -1.5123 -4.2200 24 1 0.1919 -1.4140 -3.7336 25 6 1.2669 -2.2638 -5.3701 26 7 2.4349 -2.3832 -5.9628 27 14 -0.2350 -3.1126 -6.0866 28 1 -1.2638 -2.0964 -6.4243 29 1 0.1529 -3.8519 -7.3146 30 1 -0.7880 -4.0646 -5.0901 31 1 -0.3633 0.5828 -0.8465 32 1 -0.3633 -1.0244 -0.0814 33 1 -0.3633 0.4417 0.9278 34 1 2.0615 -1.4016 3.8245 35 1 3.7289 -0.9557 3.3899 36 1 0.9518 1.7178 4.5970 37 1 0.6170 -0.0199 4.8996 38 1 0.5493 0.7092 7.1410 39 1 1.6248 2.1026 6.8188 40 1 2.4680 0.0568 9.1551 41 1 4.5087 -1.2948 9.3997 42 1 5.8314 -1.8970 7.4105 43 1 5.1104 -1.1459 5.1819 44 1 2.4076 1.9543 -2.4701 45 1 1.0234 1.4516 -3.4698 46 1 0.8639 1.5191 -1.6983 47 1 2.7694 -0.1297 -4.3732 48 1 3.1175 -1.5743 -3.3934 49 1 2.5165 -2.9122 -6.7717 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000734628426.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:17 Heat of formation + Delta-G solvation = -99.409673 kcal Electronic energy + Delta-G solvation = -29695.947436 eV Core-core repulsion = 25587.808656 eV Total energy + Delta-G solvation = -4108.138779 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.01634 -40.25260 -38.92926 -36.76092 -35.90591 -34.89414 -32.93336 -32.65327 -31.61591 -30.26034 -29.07694 -27.79746 -26.21557 -25.95537 -24.33052 -22.95528 -22.69176 -21.33750 -21.12395 -20.05793 -18.81408 -17.99961 -16.89577 -16.66197 -16.53162 -16.16351 -15.88517 -15.55764 -15.40394 -15.12597 -14.84394 -14.64541 -14.23630 -14.00136 -13.54378 -13.40573 -13.20053 -13.01993 -12.96694 -12.83466 -12.36872 -12.23747 -12.13786 -12.07934 -11.90971 -11.73013 -11.48690 -11.41518 -11.24578 -11.22815 -11.13975 -11.02731 -10.94262 -10.69983 -10.57559 -10.49062 -10.19147 -9.69127 -9.10902 -8.92689 -8.81908 -8.46453 -7.73420 -6.07515 -4.12996 1.04282 1.09144 2.15612 2.48960 3.22799 3.30073 3.34760 3.38362 3.45682 3.86928 4.04896 4.19453 4.41255 4.50047 4.62686 4.69070 4.74307 4.78221 4.85905 4.94607 5.02408 5.09195 5.09440 5.15253 5.22160 5.24699 5.26924 5.41967 5.47864 5.53143 5.58031 5.68920 5.71934 5.72809 5.73866 5.86845 5.88926 5.93818 6.08236 6.16969 6.22144 6.22651 6.35062 6.45753 6.69765 6.97807 7.38625 7.45066 7.71933 7.88302 8.18029 8.28186 8.82289 8.97365 9.52035 11.00527 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.022877 B = 0.001950 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.622948 B =14357.875737 C =14759.776303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.070 3.930 3 H 0.102 0.898 4 O -0.326 6.326 5 C 0.461 3.539 6 O -0.511 6.511 7 C -0.107 4.107 8 C -0.037 4.037 9 H 0.100 0.900 10 C -0.116 4.116 11 C -0.083 4.083 12 C -0.093 4.093 13 C -0.110 4.110 14 C -0.120 4.120 15 C -0.121 4.121 16 C -0.104 4.104 17 C -0.092 4.092 18 C 0.509 3.491 19 O -0.521 6.521 20 N -0.596 5.596 21 C 0.073 3.927 22 C 0.246 3.754 23 C -0.530 4.530 24 H 0.058 0.942 25 C 0.061 3.939 26 N -0.893 5.893 27 Si 0.899 3.101 28 H -0.277 1.277 29 H -0.286 1.286 30 H -0.276 1.276 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.122 0.878 44 H 0.048 0.952 45 H 0.078 0.922 46 H 0.061 0.939 47 H 0.036 0.964 48 H 0.046 0.954 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.005 8.459 26.914 28.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.012 3.988 3 H 0.120 0.880 4 O -0.242 6.242 5 C 0.304 3.696 6 O -0.399 6.399 7 C -0.144 4.144 8 C -0.055 4.055 9 H 0.118 0.882 10 C -0.153 4.153 11 C -0.120 4.120 12 C -0.093 4.093 13 C -0.128 4.128 14 C -0.138 4.138 15 C -0.139 4.139 16 C -0.122 4.122 17 C -0.092 4.092 18 C 0.293 3.707 19 O -0.396 6.396 20 N -0.330 5.330 21 C -0.071 4.071 22 C 0.127 3.873 23 C -0.569 4.569 24 H 0.076 0.924 25 C -0.141 4.141 26 N -0.532 5.532 27 Si 0.727 3.273 28 H -0.202 1.202 29 H -0.211 1.211 30 H -0.201 1.201 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.105 0.895 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.137 0.863 41 H 0.140 0.860 42 H 0.142 0.858 43 H 0.140 0.860 44 H 0.067 0.933 45 H 0.097 0.903 46 H 0.079 0.921 47 H 0.054 0.946 48 H 0.064 0.936 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.261 8.118 26.715 27.922 hybrid contribution -0.779 -0.360 -0.565 1.027 sum -0.518 7.758 26.150 27.282 Atomic orbital electron populations 1.22149 0.92134 1.04327 1.03408 1.22658 0.96010 0.97342 0.82835 0.88000 1.86638 1.76318 1.41566 1.19631 1.23741 0.74247 0.85982 0.85599 1.90628 1.48360 1.16562 1.84359 1.21478 1.04458 0.99710 0.88785 1.20548 0.96720 0.97603 0.90668 0.88183 1.22425 0.95364 1.02907 0.94610 1.21079 0.95566 0.99242 0.96099 1.20615 0.97179 0.98250 0.93238 1.20626 0.97117 0.98828 0.96224 1.21055 0.95246 0.98730 0.98749 1.21056 1.00024 1.00430 0.92373 1.20700 0.95870 0.97838 0.97785 1.20474 0.95406 0.98133 0.95141 1.19784 0.80257 0.86806 0.83811 1.90696 1.44923 1.18629 1.85382 1.48079 1.64873 1.12374 1.07660 1.21847 0.99238 0.82843 1.03172 1.19354 0.96673 0.92022 0.79230 1.21381 0.95030 1.31157 1.09310 0.92407 1.24943 0.96262 0.96175 0.96711 1.69925 1.23186 1.40417 1.19677 0.86538 0.82693 0.79698 0.78380 1.20216 1.21142 1.20141 0.89619 0.90694 0.91331 0.87344 0.87259 0.89547 0.90876 0.90609 0.90070 0.86314 0.85964 0.85817 0.85979 0.93332 0.90310 0.92058 0.94640 0.93578 0.92585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 9.27 37.16 0.34 -1.96 16 2 C 0.07 1.16 2.12 -27.88 -0.06 1.11 16 3 H 0.10 1.55 6.23 -51.93 -0.32 1.23 16 4 O -0.33 -5.37 9.46 -45.78 -0.43 -5.80 16 5 C 0.46 6.17 7.70 36.00 0.28 6.45 16 6 O -0.51 -7.36 14.39 -18.75 -0.27 -7.63 16 7 C -0.11 -1.05 5.16 -27.89 -0.14 -1.20 16 8 C -0.04 -0.34 2.47 -90.74 -0.22 -0.57 16 9 H 0.10 1.00 7.77 -51.93 -0.40 0.60 16 10 C -0.12 -0.97 5.89 -25.33 -0.15 -1.12 16 11 C -0.08 -0.61 6.77 -26.85 -0.18 -0.80 16 12 C -0.09 -0.81 6.14 -104.20 -0.64 -1.45 16 13 C -0.11 -0.86 10.04 -39.53 -0.40 -1.26 16 14 C -0.12 -0.89 10.05 -39.62 -0.40 -1.29 16 15 C -0.12 -0.94 10.05 -39.63 -0.40 -1.34 16 16 C -0.10 -0.89 9.68 -39.54 -0.38 -1.28 16 17 C -0.09 -0.84 5.61 -104.20 -0.58 -1.42 16 18 C 0.51 10.95 6.96 -10.99 -0.08 10.88 16 19 O -0.52 -13.54 16.13 -13.58 -0.22 -13.76 16 20 N -0.60 -12.71 2.86 -182.95 -0.52 -13.23 16 21 C 0.07 1.15 9.98 59.85 0.60 1.75 16 22 C 0.25 6.41 5.21 -5.19 -0.03 6.39 16 23 C -0.53 -14.85 9.39 -34.44 -0.32 -15.18 16 24 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 25 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 26 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 27 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 28 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 29 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 30 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 31 H 0.09 1.11 6.25 -51.93 -0.32 0.79 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.11 0.96 7.95 -51.93 -0.41 0.55 16 35 H 0.11 0.97 7.54 -51.93 -0.39 0.57 16 36 H 0.09 0.77 7.88 -51.93 -0.41 0.36 16 37 H 0.07 0.60 7.78 -51.93 -0.40 0.20 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 41 H 0.12 0.65 8.06 -52.49 -0.42 0.22 16 42 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 43 H 0.12 0.90 7.65 -52.48 -0.40 0.50 16 44 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.08 1.25 8.09 -51.93 -0.42 0.83 16 46 H 0.06 0.80 4.54 -51.93 -0.24 0.56 16 47 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 48 H 0.05 1.36 7.36 -51.93 -0.38 0.98 16 49 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 403.03 15.07 6.07 6.07 Total: -1.00 -34.44 403.03 -9.97 -44.41 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -7.46 Total: -0.41 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -2.86 Total: -0.64 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.21 Total: -38.88 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.92 Total: -27.18 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.44 -9.97 -44.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734628426.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.999 kcal (2) G-P(sol) polarization free energy of solvation -34.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds