Wall clock time and date at job start Wed Apr 1 2020 03:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46837 * 2 1 4 4 O 1.45192 * 109.46685 * 120.00547 * 2 1 3 5 5 C 1.34237 * 117.00025 * 269.99540 * 4 2 1 6 6 O 1.20830 * 119.99608 * 0.02562 * 5 4 2 7 7 C 1.50696 * 120.00220 * 180.02562 * 5 4 2 8 8 C 1.52999 * 109.46868 * 185.44878 * 7 5 4 9 9 H 1.08995 * 110.26691 * 308.49947 * 8 7 5 10 10 C 1.54339 * 110.30805 * 70.68515 * 8 7 5 11 11 C 1.54343 * 102.39710 * 145.26602 * 10 8 7 12 12 C 1.51374 * 105.16637 * 333.65117 * 11 10 8 13 13 C 1.38501 * 130.38585 * 197.17261 * 12 11 10 14 14 C 1.38105 * 120.21195 * 180.02562 * 13 12 11 15 15 C 1.38254 * 119.93293 * 359.97248 * 14 13 12 16 16 C 1.38095 * 119.93858 * 359.97438 * 15 14 13 17 17 C 1.38219 * 109.75763 * 17.19531 * 12 11 10 18 18 C 1.50699 * 109.47060 * 240.00350 * 2 1 3 19 19 O 1.21280 * 120.00025 * 255.43054 * 18 2 1 20 20 N 1.34771 * 120.00162 * 75.42480 * 18 2 1 21 21 C 1.46505 * 119.99997 * 5.13764 * 20 18 2 22 22 C 1.46506 * 120.00065 * 185.12724 * 20 18 2 23 23 C 1.50704 * 109.46540 * 90.00737 * 22 20 18 24 24 H 1.07996 * 120.00250 * 359.97438 * 23 22 20 25 25 C 1.37873 * 119.99624 * 179.97438 * 23 22 20 26 26 N 1.31519 * 120.00162 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 120.00144 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.47149 * 60.00327 * 27 25 23 29 29 H 1.48495 * 109.47458 * 180.02562 * 27 25 23 30 30 H 1.48499 * 109.47198 * 300.00357 * 27 25 23 31 31 H 1.09005 * 109.46938 * 55.45523 * 1 2 3 32 32 H 1.08998 * 109.47089 * 175.45439 * 1 2 3 33 33 H 1.08995 * 109.47197 * 295.45664 * 1 2 3 34 34 H 1.08998 * 109.46916 * 305.44280 * 7 5 4 35 35 H 1.08997 * 109.47623 * 65.44324 * 7 5 4 36 36 H 1.09002 * 110.82162 * 263.49326 * 10 8 7 37 37 H 1.08997 * 110.82310 * 27.03961 * 10 8 7 38 38 H 1.08997 * 110.30746 * 214.72782 * 11 10 8 39 39 H 1.09000 * 110.30213 * 92.56966 * 11 10 8 40 40 H 1.07992 * 119.89096 * 0.02745 * 13 12 11 41 41 H 1.07997 * 120.02931 * 179.97438 * 14 13 12 42 42 H 1.08005 * 120.02705 * 180.02562 * 15 14 13 43 43 H 1.08007 * 119.89423 * 180.02562 * 16 15 14 44 44 H 1.08993 * 109.47314 * 92.34498 * 21 20 18 45 45 H 1.09004 * 109.46904 * 212.34407 * 21 20 18 46 46 H 1.08993 * 109.46939 * 332.33767 * 21 20 18 47 47 H 1.09005 * 109.47042 * 210.00247 * 22 20 18 48 48 H 1.08994 * 109.47491 * 330.00589 * 22 20 18 49 49 H 0.97001 * 119.99887 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0139 -0.6846 1.1855 5 6 2.2171 0.0639 2.2811 6 8 1.9974 1.2516 2.2506 7 6 2.7192 -0.5772 3.5491 8 6 2.7347 0.4602 4.6736 9 1 3.2655 1.3566 4.3530 10 6 1.2931 0.8118 5.0979 11 6 1.4426 1.0473 6.6159 12 6 2.6400 0.2186 7.0292 13 6 3.0478 -0.2063 8.2828 14 6 4.1932 -0.9654 8.4207 15 6 4.9356 -1.3031 7.3044 16 6 4.5301 -0.8813 6.0535 17 6 3.3825 -0.1186 5.9132 18 6 2.0324 -0.7103 -1.2305 19 8 2.4836 -1.8325 -1.1412 20 7 1.9801 -0.0986 -2.4303 21 6 1.5407 1.2959 -2.5230 22 6 2.3629 -0.8281 -3.6418 23 6 1.1510 -1.5123 -4.2200 24 1 0.1919 -1.4140 -3.7336 25 6 1.2669 -2.2638 -5.3701 26 7 2.4349 -2.3832 -5.9628 27 14 -0.2350 -3.1126 -6.0866 28 1 -1.2638 -2.0964 -6.4243 29 1 0.1529 -3.8519 -7.3146 30 1 -0.7880 -4.0646 -5.0901 31 1 -0.3633 0.5828 -0.8465 32 1 -0.3633 -1.0244 -0.0814 33 1 -0.3633 0.4417 0.9278 34 1 2.0615 -1.4016 3.8245 35 1 3.7289 -0.9557 3.3899 36 1 0.9518 1.7178 4.5970 37 1 0.6170 -0.0199 4.8996 38 1 0.5493 0.7092 7.1410 39 1 1.6248 2.1026 6.8188 40 1 2.4680 0.0568 9.1551 41 1 4.5087 -1.2948 9.3997 42 1 5.8314 -1.8970 7.4105 43 1 5.1104 -1.1459 5.1819 44 1 2.4076 1.9543 -2.4701 45 1 1.0234 1.4516 -3.4698 46 1 0.8639 1.5191 -1.6983 47 1 2.7694 -0.1297 -4.3732 48 1 3.1175 -1.5743 -3.3934 49 1 2.5165 -2.9122 -6.7717 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000734628426.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:16 Heat of formation + Delta-G solvation = -116.944883 kcal Electronic energy + Delta-G solvation = -29696.707819 eV Core-core repulsion = 25587.808656 eV Total energy + Delta-G solvation = -4108.899163 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.05985 -41.13186 -40.42106 -37.85041 -36.74755 -36.63907 -34.86997 -33.54378 -32.88277 -30.97475 -29.73373 -29.64619 -27.60796 -26.88532 -25.91178 -24.30339 -23.55157 -22.32557 -21.81406 -20.86994 -20.38773 -19.09598 -18.69793 -18.16865 -17.66293 -17.35788 -17.06929 -16.76532 -16.28749 -16.26547 -16.06243 -15.75516 -15.57134 -15.02051 -14.71335 -14.44907 -14.25280 -14.03425 -13.90248 -13.84459 -13.62335 -13.56908 -13.51024 -13.34125 -13.11884 -12.97200 -12.84127 -12.64264 -12.55424 -12.51823 -12.20018 -12.06505 -11.93846 -11.88186 -11.77571 -11.74841 -11.66975 -11.50436 -10.64813 -10.64261 -9.70383 -9.53670 -9.42539 -8.23468 -6.38493 0.43773 0.49956 1.08510 1.31258 1.37604 1.42027 1.48742 1.59353 2.32330 2.43924 2.86346 3.06567 3.36177 3.39343 3.48347 3.69078 3.78656 3.83592 3.86521 4.00433 4.19531 4.22022 4.24259 4.35765 4.40080 4.45401 4.55135 4.56273 4.59747 4.63588 4.68988 4.83878 4.86359 4.88789 4.93885 4.96702 5.07049 5.08664 5.17170 5.19161 5.27670 5.28121 5.37382 5.50757 5.58669 5.64816 5.74802 5.77255 6.02362 6.13244 6.52376 6.66274 6.70148 7.18645 7.34980 8.83898 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.022877 B = 0.001950 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.622948 B =14357.875737 C =14759.776303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.080 3.920 3 H 0.121 0.879 4 O -0.348 6.348 5 C 0.462 3.538 6 O -0.519 6.519 7 C -0.102 4.102 8 C -0.032 4.032 9 H 0.089 0.911 10 C -0.115 4.115 11 C -0.079 4.079 12 C -0.105 4.105 13 C -0.118 4.118 14 C -0.124 4.124 15 C -0.130 4.130 16 C -0.118 4.118 17 C -0.107 4.107 18 C 0.500 3.500 19 O -0.579 6.579 20 N -0.600 5.600 21 C 0.066 3.934 22 C 0.259 3.741 23 C -0.545 4.545 24 H 0.059 0.941 25 C 0.007 3.993 26 N -0.928 5.928 27 Si 0.969 3.031 28 H -0.258 1.258 29 H -0.280 1.280 30 H -0.277 1.277 31 H 0.100 0.900 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.137 0.863 41 H 0.144 0.856 42 H 0.140 0.860 43 H 0.128 0.872 44 H 0.071 0.929 45 H 0.078 0.922 46 H 0.094 0.906 47 H 0.030 0.970 48 H -0.001 1.001 49 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.664 9.443 28.606 30.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.022 3.978 3 H 0.139 0.861 4 O -0.264 6.264 5 C 0.307 3.693 6 O -0.408 6.408 7 C -0.139 4.139 8 C -0.050 4.050 9 H 0.107 0.893 10 C -0.153 4.153 11 C -0.116 4.116 12 C -0.105 4.105 13 C -0.136 4.136 14 C -0.141 4.141 15 C -0.147 4.147 16 C -0.136 4.136 17 C -0.107 4.107 18 C 0.287 3.713 19 O -0.459 6.459 20 N -0.333 5.333 21 C -0.075 4.075 22 C 0.138 3.862 23 C -0.583 4.583 24 H 0.077 0.923 25 C -0.192 4.192 26 N -0.567 5.567 27 Si 0.793 3.207 28 H -0.183 1.183 29 H -0.205 1.205 30 H -0.203 1.203 31 H 0.118 0.882 32 H 0.078 0.922 33 H 0.112 0.888 34 H 0.139 0.861 35 H 0.136 0.864 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.154 0.846 41 H 0.162 0.838 42 H 0.158 0.842 43 H 0.146 0.854 44 H 0.089 0.911 45 H 0.097 0.903 46 H 0.113 0.887 47 H 0.048 0.952 48 H 0.018 0.982 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.415 9.168 28.424 29.899 hybrid contribution -0.168 -0.637 -1.023 1.217 sum -1.583 8.531 27.400 28.741 Atomic orbital electron populations 1.22160 0.89939 1.03955 1.05367 1.22516 0.97371 0.96957 0.80928 0.86108 1.86656 1.76872 1.42651 1.20193 1.24340 0.73635 0.85889 0.85468 1.90615 1.48835 1.16959 1.84413 1.21594 1.04998 1.00119 0.87189 1.20479 0.97238 0.96845 0.90458 0.89310 1.22415 0.94783 1.02671 0.95409 1.21072 0.95699 0.99469 0.95320 1.20851 0.97580 0.98559 0.93531 1.20918 0.97483 0.98658 0.96577 1.21387 0.94925 0.98146 0.99677 1.21342 1.00708 1.00479 0.92216 1.20911 0.96015 0.98114 0.98575 1.20528 0.96005 0.98991 0.95174 1.20699 0.79082 0.86374 0.85173 1.90656 1.47434 1.21348 1.86435 1.48070 1.64521 1.14258 1.06410 1.22163 1.00937 0.79788 1.04634 1.18852 0.95192 0.91268 0.80912 1.21663 0.95418 1.31626 1.09619 0.92326 1.25890 0.99437 0.96776 0.97143 1.70051 1.25384 1.41143 1.20150 0.85440 0.79051 0.78719 0.77450 1.18267 1.20502 1.20251 0.88171 0.92205 0.88824 0.86149 0.86352 0.90100 0.90662 0.89360 0.89501 0.84555 0.83831 0.84183 0.85437 0.91055 0.90299 0.88731 0.95235 0.98238 0.92357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.12 9.27 71.98 0.67 -3.45 16 2 C 0.08 2.59 2.12 29.85 0.06 2.66 16 3 H 0.12 3.41 6.23 -2.39 -0.01 3.40 16 4 O -0.35 -11.28 9.46 -45.27 -0.43 -11.71 16 5 C 0.46 11.92 7.70 71.23 0.55 12.47 16 6 O -0.52 -14.19 14.39 21.95 0.32 -13.87 16 7 C -0.10 -1.93 5.16 29.85 0.15 -1.77 16 8 C -0.03 -0.56 2.47 -10.87 -0.03 -0.59 16 9 H 0.09 1.74 7.77 -2.39 -0.02 1.72 16 10 C -0.12 -1.80 5.89 31.50 0.19 -1.61 16 11 C -0.08 -1.04 6.77 30.52 0.21 -0.83 16 12 C -0.11 -1.68 6.14 -19.59 -0.12 -1.80 16 13 C -0.12 -1.65 10.04 22.30 0.22 -1.42 16 14 C -0.12 -1.60 10.05 22.24 0.22 -1.38 16 15 C -0.13 -1.83 10.05 22.24 0.22 -1.61 16 16 C -0.12 -1.93 9.68 22.30 0.22 -1.72 16 17 C -0.11 -1.86 5.61 -19.59 -0.11 -1.97 16 18 C 0.50 21.85 6.96 87.66 0.61 22.46 16 19 O -0.58 -31.48 16.13 15.27 0.25 -31.24 16 20 N -0.60 -25.82 2.86 -851.12 -2.43 -28.25 16 21 C 0.07 1.98 9.98 127.77 1.28 3.26 16 22 C 0.26 14.00 5.21 85.63 0.45 14.45 16 23 C -0.54 -31.06 9.39 25.60 0.24 -30.82 16 24 H 0.06 3.25 7.81 -2.91 -0.02 3.23 16 25 C 0.01 0.38 5.46 84.65 0.46 0.85 16 26 N -0.93 -55.98 13.29 21.45 0.28 -55.69 16 27 Si 0.97 44.43 29.54 68.60 2.03 46.45 16 28 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 29 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 30 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 31 H 0.10 2.31 6.25 -2.38 -0.01 2.29 16 32 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.12 2.01 7.95 -2.39 -0.02 1.99 16 35 H 0.12 2.03 7.54 -2.39 -0.02 2.01 16 36 H 0.08 1.34 7.88 -2.39 -0.02 1.32 16 37 H 0.07 1.13 7.78 -2.39 -0.02 1.11 16 38 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16 41 H 0.14 1.16 8.06 -2.91 -0.02 1.14 16 42 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 43 H 0.13 1.81 7.65 -2.91 -0.02 1.79 16 44 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.08 2.37 8.09 -2.39 -0.02 2.36 16 46 H 0.09 2.18 4.54 -2.39 -0.01 2.17 16 47 H 0.03 1.61 8.07 -2.38 -0.02 1.59 16 48 H 0.00 -0.03 7.36 -2.39 -0.02 -0.05 16 49 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -77.02 403.03 6.45 -70.57 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 0.95 Total: 16.58 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: 5.49 Total: 7.15 kcal Atomic # 7 Polarization: -81.80 SS G_CDS: -2.15 Total: -83.94 kcal Atomic # 8 Polarization: -56.95 SS G_CDS: 0.13 Total: -56.81 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -77.02 6.45 -70.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734628426.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.372 kcal (2) G-P(sol) polarization free energy of solvation -77.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds