Wall clock time and date at job start Wed Apr 1 2020 03:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09002 * 109.46886 * 2 1 4 4 O 1.45193 * 109.46978 * 239.99982 * 2 1 3 5 5 C 1.34225 * 117.00250 * 90.00201 * 4 2 1 6 6 O 1.20827 * 119.99942 * 359.97438 * 5 4 2 7 7 C 1.50706 * 120.00363 * 179.97438 * 5 4 2 8 8 C 1.52993 * 109.47177 * 179.97438 * 7 5 4 9 9 H 1.09003 * 110.34779 * 304.32834 * 8 7 5 10 10 C 1.54342 * 110.30420 * 182.20119 * 8 7 5 11 11 C 1.54352 * 102.39346 * 267.42541 * 10 8 7 12 12 C 1.51369 * 105.16653 * 333.64937 * 11 10 8 13 13 C 1.38495 * 130.39033 * 197.16638 * 12 11 10 14 14 C 1.38105 * 120.21560 * 180.02562 * 13 12 11 15 15 C 1.38245 * 119.93686 * 359.97438 * 14 13 12 16 16 C 1.38106 * 119.93707 * 0.22876 * 15 14 13 17 17 C 1.38215 * 109.76229 * 17.19169 * 12 11 10 18 18 C 1.50698 * 109.47130 * 119.99793 * 2 1 3 19 19 O 1.21277 * 120.00192 * 119.99840 * 18 2 1 20 20 N 1.34778 * 120.00165 * 300.00254 * 18 2 1 21 21 C 1.46500 * 119.99826 * 359.97438 * 20 18 2 22 22 C 1.46503 * 120.00031 * 179.97438 * 20 18 2 23 23 C 1.50700 * 109.46781 * 89.99883 * 22 20 18 24 24 H 1.07992 * 120.00527 * 0.02562 * 23 22 20 25 25 C 1.37880 * 119.99405 * 179.97438 * 23 22 20 26 26 N 1.31520 * 119.99689 * 180.02562 * 25 23 22 27 27 Si 1.86800 * 120.00560 * 0.02562 * 25 23 22 28 28 H 1.48502 * 109.47090 * 89.99458 * 27 25 23 29 29 H 1.48501 * 109.47344 * 210.00041 * 27 25 23 30 30 H 1.48505 * 109.46697 * 330.00191 * 27 25 23 31 31 H 1.08997 * 109.46772 * 60.00518 * 1 2 3 32 32 H 1.09002 * 109.46886 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47186 * 299.99947 * 1 2 3 34 34 H 1.09000 * 109.46890 * 59.99490 * 7 5 4 35 35 H 1.08998 * 109.46965 * 300.00185 * 7 5 4 36 36 H 1.09000 * 110.82366 * 149.19816 * 10 8 7 37 37 H 1.09003 * 110.99241 * 25.72651 * 10 8 7 38 38 H 1.08999 * 110.30249 * 214.72767 * 11 10 8 39 39 H 1.08997 * 110.38871 * 92.61246 * 11 10 8 40 40 H 1.08001 * 119.89448 * 0.02562 * 13 12 11 41 41 H 1.08005 * 120.03446 * 180.02562 * 14 13 12 42 42 H 1.08002 * 120.03730 * 180.02562 * 15 14 13 43 43 H 1.07993 * 119.89921 * 179.97438 * 16 15 14 44 44 H 1.09003 * 109.47026 * 90.00527 * 21 20 18 45 45 H 1.09002 * 109.46986 * 209.99536 * 21 20 18 46 46 H 1.08996 * 109.47065 * 330.00252 * 21 20 18 47 47 H 1.08996 * 109.46839 * 210.00036 * 22 20 18 48 48 H 1.09003 * 109.47217 * 329.99945 * 22 20 18 49 49 H 0.96998 * 120.00066 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0140 -0.6845 -1.1855 5 6 2.2172 0.0640 -2.2810 6 8 1.9975 1.2517 -2.2506 7 6 2.7194 -0.5771 -3.5492 8 6 2.8633 0.4889 -4.6371 9 1 1.9188 1.0137 -4.7808 10 6 3.3244 -0.1562 -5.9613 11 6 4.8598 -0.0223 -5.8780 12 6 5.1051 1.1746 -4.9843 13 6 6.2422 1.9454 -4.8086 14 6 6.2332 3.0057 -3.9238 15 6 5.0858 3.2998 -3.2111 16 6 3.9521 2.5299 -3.3817 17 6 3.9580 1.4683 -4.2713 18 6 2.0324 -0.7104 1.2305 19 8 2.7296 -1.6964 1.1193 20 7 1.7068 -0.2499 2.4546 21 6 0.8650 0.9415 2.5890 22 6 2.1947 -0.9408 3.6508 23 6 3.5224 -0.3578 4.0611 24 1 3.9589 0.4471 3.4885 25 6 4.1793 -0.8514 5.1683 26 7 5.3378 -0.3423 5.5268 27 14 3.4240 -2.2432 6.1593 28 1 3.8841 -3.5456 5.6138 29 1 3.8439 -2.1248 7.5787 30 1 1.9435 -2.1656 6.0728 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 2.0106 -1.3373 -3.8773 35 1 3.6884 -1.0401 -3.3631 36 1 2.9333 0.3941 -6.8171 37 1 3.0289 -1.2043 -6.0088 38 1 5.2784 0.1535 -6.8689 39 1 5.2958 -0.9188 -5.4374 40 1 7.1389 1.7165 -5.3653 41 1 7.1216 3.6051 -3.7894 42 1 5.0768 4.1289 -2.5190 43 1 3.0562 2.7599 -2.8244 44 1 -0.1831 0.6440 2.6222 45 1 1.1228 1.4667 3.5087 46 1 1.0288 1.6002 1.7362 47 1 1.4766 -0.8152 4.4611 48 1 2.3154 -2.0021 3.4335 49 1 5.7998 -0.6893 6.3059 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000734628427.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:21 Heat of formation + Delta-G solvation = -85.994816 kcal Electronic energy + Delta-G solvation = -30543.600168 eV Core-core repulsion = 26436.043101 eV Total energy + Delta-G solvation = -4107.557068 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.04676 -40.09361 -38.97206 -36.61910 -36.02662 -35.07313 -32.89575 -32.19472 -31.61907 -30.14801 -28.95223 -28.27638 -26.45093 -26.06080 -24.29808 -22.75516 -22.45506 -21.12450 -21.01267 -19.93953 -18.91078 -17.93941 -16.97523 -16.92909 -16.61454 -16.10801 -15.91524 -15.61162 -15.07959 -15.04443 -14.80060 -14.74784 -14.19464 -13.65053 -13.51432 -13.35847 -13.16570 -12.98951 -12.80681 -12.71548 -12.45367 -12.40871 -12.31189 -12.20710 -11.85473 -11.81030 -11.55324 -11.36655 -11.29575 -11.22884 -11.04666 -10.97867 -10.75107 -10.63313 -10.54862 -10.30546 -10.17251 -9.57247 -9.02705 -8.78892 -8.61240 -8.60236 -7.81004 -6.10767 -4.10378 1.30030 1.40559 2.19470 2.49750 3.17607 3.27718 3.33565 3.35431 3.72160 3.76710 4.18764 4.28708 4.37398 4.50641 4.66678 4.75467 4.85316 4.93059 4.96022 5.05171 5.05880 5.06890 5.17293 5.22223 5.24470 5.29520 5.45527 5.46816 5.53887 5.59128 5.60405 5.61820 5.70853 5.74897 5.78010 5.85521 5.93981 6.00937 6.13787 6.15221 6.42111 6.44003 6.59227 6.64008 6.68795 6.87890 7.01504 7.22463 7.56609 7.78928 8.09785 8.42988 8.81430 8.92812 9.48477 11.02546 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013400 B = 0.002697 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.997743 B =10378.176886 C =11222.290518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.072 3.928 3 H 0.107 0.893 4 O -0.327 6.327 5 C 0.461 3.539 6 O -0.506 6.506 7 C -0.103 4.103 8 C -0.038 4.038 9 H 0.090 0.910 10 C -0.115 4.115 11 C -0.083 4.083 12 C -0.099 4.099 13 C -0.117 4.117 14 C -0.117 4.117 15 C -0.128 4.128 16 C -0.090 4.090 17 C -0.097 4.097 18 C 0.511 3.489 19 O -0.519 6.519 20 N -0.592 5.592 21 C 0.076 3.924 22 C 0.217 3.783 23 C -0.532 4.532 24 H 0.074 0.926 25 C 0.073 3.927 26 N -0.896 5.896 27 Si 0.877 3.123 28 H -0.273 1.273 29 H -0.284 1.284 30 H -0.265 1.265 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.117 0.883 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.143 0.857 44 H 0.052 0.948 45 H 0.080 0.920 46 H 0.062 0.938 47 H 0.034 0.966 48 H 0.038 0.962 49 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.943 4.006 -23.036 24.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.013 3.987 3 H 0.125 0.875 4 O -0.242 6.242 5 C 0.305 3.695 6 O -0.395 6.395 7 C -0.141 4.141 8 C -0.056 4.056 9 H 0.108 0.892 10 C -0.152 4.152 11 C -0.120 4.120 12 C -0.099 4.099 13 C -0.135 4.135 14 C -0.135 4.135 15 C -0.146 4.146 16 C -0.108 4.108 17 C -0.097 4.097 18 C 0.295 3.705 19 O -0.394 6.394 20 N -0.325 5.325 21 C -0.068 4.068 22 C 0.097 3.903 23 C -0.571 4.571 24 H 0.093 0.907 25 C -0.130 4.130 26 N -0.534 5.534 27 Si 0.704 3.296 28 H -0.198 1.198 29 H -0.210 1.210 30 H -0.190 1.190 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.135 0.865 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.160 0.840 44 H 0.071 0.929 45 H 0.099 0.901 46 H 0.080 0.920 47 H 0.052 0.948 48 H 0.056 0.944 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.495 3.797 -22.889 24.383 hybrid contribution -0.087 -0.361 0.854 0.932 sum -7.582 3.436 -22.035 23.555 Atomic orbital electron populations 1.22397 0.92468 1.03982 1.04330 1.22530 0.95544 0.97692 0.82887 0.87525 1.86606 1.76510 1.41515 1.19574 1.23742 0.74242 0.85970 0.85535 1.90514 1.48095 1.16384 1.84466 1.21426 1.04277 0.99147 0.89222 1.20486 0.98470 0.93366 0.93274 0.89176 1.22351 0.95090 1.01387 0.96387 1.21066 0.96300 0.95864 0.98801 1.20596 0.94048 0.96878 0.98374 1.20552 0.97305 0.95918 0.99704 1.21066 0.98220 0.97556 0.96659 1.21162 0.93276 1.00199 0.99954 1.21250 0.99293 0.93635 0.96613 1.20376 0.95171 0.96460 0.97647 1.19820 0.81443 0.85353 0.83845 1.90703 1.36695 1.26125 1.85888 1.47723 1.50170 1.28494 1.06131 1.21909 0.93688 0.87840 1.03340 1.19718 0.95480 0.93727 0.81368 1.21319 1.03129 1.20471 1.12154 0.90742 1.24862 0.94626 0.96471 0.97021 1.69900 1.14763 1.42260 1.26486 0.86839 0.80020 0.83246 0.79518 1.19836 1.21009 1.19019 0.91261 0.91111 0.88955 0.87105 0.87355 0.90390 0.90011 0.90714 0.90075 0.86540 0.86117 0.86024 0.83962 0.92929 0.90117 0.91965 0.94832 0.94379 0.92500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 9.18 37.16 0.34 -1.81 16 2 C 0.07 1.18 2.18 -27.88 -0.06 1.12 16 3 H 0.11 1.71 6.42 -51.93 -0.33 1.38 16 4 O -0.33 -5.39 9.41 -45.89 -0.43 -5.82 16 5 C 0.46 6.39 7.69 36.01 0.28 6.67 16 6 O -0.51 -7.41 11.33 -18.75 -0.21 -7.62 16 7 C -0.10 -1.04 5.21 -27.88 -0.15 -1.18 16 8 C -0.04 -0.36 2.52 -90.74 -0.23 -0.58 16 9 H 0.09 0.85 8.00 -51.93 -0.42 0.44 16 10 C -0.11 -0.79 6.59 -25.32 -0.17 -0.95 16 11 C -0.08 -0.66 6.76 -26.85 -0.18 -0.84 16 12 C -0.10 -1.09 6.14 -104.21 -0.64 -1.73 16 13 C -0.12 -1.28 10.04 -39.54 -0.40 -1.68 16 14 C -0.12 -1.33 10.05 -39.63 -0.40 -1.73 16 15 C -0.13 -1.59 10.05 -39.63 -0.40 -1.99 16 16 C -0.09 -1.20 8.91 -39.53 -0.35 -1.56 16 17 C -0.10 -1.16 5.13 -104.20 -0.54 -1.69 16 18 C 0.51 10.80 7.15 -10.99 -0.08 10.72 16 19 O -0.52 -13.33 16.08 -14.10 -0.23 -13.56 16 20 N -0.59 -12.20 2.86 -182.95 -0.52 -12.72 16 21 C 0.08 1.13 8.80 59.85 0.53 1.66 16 22 C 0.22 5.30 4.23 -5.19 -0.02 5.28 16 23 C -0.53 -15.38 9.94 -34.44 -0.34 -15.72 16 24 H 0.07 2.37 8.06 -52.49 -0.42 1.95 16 25 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 26 N -0.90 -27.74 13.96 55.43 0.77 -26.97 16 27 Si 0.88 21.50 27.47 -169.99 -4.67 16.83 16 28 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 29 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 30 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.09 0.99 4.53 -51.93 -0.24 0.76 16 34 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.42 7.91 -51.93 -0.41 0.01 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 41 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 42 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 43 H 0.14 2.01 5.57 -52.49 -0.29 1.71 16 44 H 0.05 0.63 6.95 -51.93 -0.36 0.26 16 45 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 46 H 0.06 0.80 6.01 -51.93 -0.31 0.49 16 47 H 0.03 0.77 7.13 -51.93 -0.37 0.40 16 48 H 0.04 0.99 6.85 -51.93 -0.36 0.64 16 49 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 392.88 15.07 5.92 5.92 Total: -1.00 -36.28 392.88 -9.59 -45.87 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -7.32 Total: 2.06 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -2.90 Total: -3.99 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.25 Total: -39.69 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -0.87 Total: -27.00 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.28 -9.59 -45.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734628427.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.126 kcal (2) G-P(sol) polarization free energy of solvation -36.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds