Wall clock time and date at job start Wed Apr 1 2020 04:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.46504 * 120.00381 * 269.99975 * 3 2 1 5 5 C 1.50704 * 109.46773 * 90.00257 * 4 3 2 6 6 H 1.07998 * 119.99721 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99850 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99692 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99728 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47060 * 90.00267 * 9 7 5 11 11 H 1.48504 * 109.47035 * 209.99814 * 9 7 5 12 12 H 1.48498 * 109.47691 * 329.99852 * 9 7 5 13 13 C 1.34781 * 119.99786 * 90.00416 * 3 2 1 14 14 O 1.21279 * 120.00132 * 180.02562 * 13 3 2 15 15 C 1.50694 * 120.00287 * 359.97438 * 13 3 2 16 16 O 1.45194 * 109.47579 * 180.02562 * 15 13 3 17 17 C 1.34231 * 117.00040 * 180.02562 * 16 15 13 18 18 O 1.20820 * 120.00336 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99572 * 179.97438 * 17 16 15 20 20 C 1.53007 * 109.47048 * 179.97438 * 19 17 16 21 21 H 1.08998 * 110.27095 * 52.92027 * 20 19 17 22 22 C 1.54342 * 110.30535 * 175.00277 * 20 19 17 23 23 C 1.54340 * 102.39516 * 92.57410 * 22 20 19 24 24 C 1.51366 * 105.17100 * 26.34517 * 23 22 20 25 25 C 1.38501 * 130.39425 * 162.81173 * 24 23 22 26 26 C 1.38098 * 120.21596 * 180.02562 * 25 24 23 27 27 C 1.38255 * 119.93541 * 359.97438 * 26 25 24 28 28 C 1.38096 * 119.93580 * 0.02562 * 27 26 25 29 29 C 1.38214 * 109.75803 * 342.81275 * 24 23 22 30 30 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 31 31 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 32 32 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 34 34 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 35 35 H 1.08992 * 109.47334 * 209.99920 * 4 3 2 36 36 H 1.08994 * 109.46680 * 330.00544 * 4 3 2 37 37 H 0.96996 * 119.99637 * 179.97438 * 8 7 5 38 38 H 1.09000 * 109.47004 * 300.00293 * 15 13 3 39 39 H 1.09005 * 109.47052 * 59.99843 * 15 13 3 40 40 H 1.09000 * 109.47110 * 299.99494 * 19 17 16 41 41 H 1.08997 * 109.47709 * 59.99746 * 19 17 16 42 42 H 1.09003 * 110.82031 * 210.80453 * 22 20 19 43 43 H 1.09002 * 110.82201 * 334.14786 * 22 20 19 44 44 H 1.08996 * 110.30403 * 145.27091 * 23 22 20 45 45 H 1.09007 * 110.30058 * 267.42168 * 23 22 20 46 46 H 1.08002 * 119.89057 * 359.97438 * 25 24 23 47 47 H 1.08001 * 120.03217 * 180.02562 * 26 25 24 48 48 H 1.08009 * 120.03177 * 179.97438 * 27 26 25 49 49 H 1.08005 * 119.89500 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 1.0065 2.7824 -1.7036 6 1 0.1158 2.7254 -1.0956 7 6 0.9947 3.5050 -2.8778 8 7 2.0793 3.5739 -3.6184 9 14 -0.5622 4.3850 -3.4172 10 1 -0.5709 5.7616 -2.8605 11 1 -0.6052 4.4505 -4.9002 12 1 -1.7482 3.6424 -2.9200 13 6 2.2429 2.0165 1.1673 14 8 2.6467 3.1601 1.1673 15 6 1.9914 1.3063 2.4723 16 8 2.3054 2.1960 3.5760 17 6 2.1344 1.7121 4.8163 18 8 1.7352 0.5829 4.9746 19 6 2.4406 2.5776 6.0115 20 6 2.1623 1.7921 7.2947 21 1 2.6901 0.8387 7.2758 22 6 2.5871 2.6152 8.5293 23 6 1.2808 3.3458 8.9059 24 6 0.1681 2.4607 8.3867 25 6 -1.1809 2.4381 8.6996 26 6 -2.0206 1.5267 8.0902 27 6 -1.5140 0.6339 7.1641 28 6 -0.1692 0.6548 6.8508 29 6 0.6745 1.5680 7.4610 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 3.0642 2.7986 -1.1384 36 1 2.5505 1.3453 -2.0283 37 1 2.0709 4.0820 -4.4446 38 1 0.9433 1.0125 2.5299 39 1 2.6213 0.4186 2.5302 40 1 3.4893 2.8737 5.9866 41 1 1.8112 3.4672 5.9867 42 1 2.9122 1.9607 9.3381 43 1 3.3714 3.3263 8.2697 44 1 1.2056 3.4524 9.9881 45 1 1.2421 4.3233 8.4252 46 1 -1.5773 3.1350 9.4233 47 1 -3.0721 1.5120 8.3361 48 1 -2.1692 -0.0799 6.6868 49 1 0.2259 -0.0433 6.1276 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000734629838.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:10 Heat of formation + Delta-G solvation = -99.453730 kcal Electronic energy + Delta-G solvation = -30091.954281 eV Core-core repulsion = 25983.813591 eV Total energy + Delta-G solvation = -4108.140690 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.01565 -40.01704 -38.90467 -36.62913 -36.06665 -35.30533 -32.80288 -32.21825 -30.49946 -30.06953 -29.22010 -28.85117 -26.78718 -25.75744 -22.87714 -22.82677 -22.78475 -21.44654 -21.09439 -20.02056 -18.70022 -17.84274 -17.01741 -16.78821 -16.55677 -16.17190 -16.00767 -15.57274 -15.21294 -15.12205 -14.85136 -14.62255 -14.22107 -13.73409 -13.44930 -13.30341 -13.06046 -13.01444 -12.89253 -12.81272 -12.40598 -12.36662 -12.15612 -12.01929 -11.90808 -11.51134 -11.40687 -11.30529 -11.23497 -11.10655 -11.02516 -10.82044 -10.75786 -10.63334 -10.47768 -10.39533 -10.08460 -9.62123 -9.00235 -8.90434 -8.70024 -8.44852 -7.76855 -6.06354 -4.10562 1.19603 1.29537 2.17043 2.48765 3.24139 3.30394 3.36706 3.39383 3.61676 3.85946 4.13901 4.23583 4.42866 4.47237 4.69929 4.82436 4.85787 4.88101 4.96767 4.99134 5.08125 5.12900 5.22620 5.26842 5.28074 5.28664 5.38226 5.39649 5.47810 5.56605 5.64959 5.69915 5.70456 5.77689 5.79554 5.92445 6.04375 6.07901 6.26304 6.32810 6.35680 6.51121 6.57732 6.72684 6.90368 6.99000 7.38134 7.47267 7.74914 7.89969 8.20087 8.28554 8.84148 8.98811 9.54150 11.01998 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014549 B = 0.002362 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.050213 B =11853.907092 C =12160.183645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.107 3.893 3 N -0.593 5.593 4 C 0.247 3.753 5 C -0.525 4.525 6 H 0.059 0.941 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.507 3.493 14 O -0.519 6.519 15 C 0.050 3.950 16 O -0.330 6.330 17 C 0.461 3.539 18 O -0.509 6.509 19 C -0.103 4.103 20 C -0.039 4.039 21 H 0.091 0.909 22 C -0.115 4.115 23 C -0.083 4.083 24 C -0.098 4.098 25 C -0.116 4.116 26 C -0.118 4.118 27 C -0.128 4.128 28 C -0.092 4.092 29 C -0.094 4.094 30 H 0.047 0.953 31 H 0.078 0.922 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.045 0.955 36 H 0.035 0.965 37 H 0.263 0.737 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.113 0.887 41 H 0.108 0.892 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.075 0.925 45 H 0.081 0.919 46 H 0.117 0.883 47 H 0.121 0.879 48 H 0.121 0.879 49 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.925 -6.953 25.029 26.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.017 4.017 3 N -0.327 5.327 4 C 0.129 3.871 5 C -0.564 4.564 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.199 1.199 13 C 0.291 3.709 14 O -0.395 6.395 15 C -0.027 4.027 16 O -0.245 6.245 17 C 0.304 3.696 18 O -0.398 6.398 19 C -0.141 4.141 20 C -0.058 4.058 21 H 0.110 0.890 22 C -0.153 4.153 23 C -0.120 4.120 24 C -0.098 4.098 25 C -0.134 4.134 26 C -0.136 4.136 27 C -0.146 4.146 28 C -0.110 4.110 29 C -0.094 4.094 30 H 0.066 0.934 31 H 0.097 0.903 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.073 0.927 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.131 0.869 41 H 0.126 0.874 42 H 0.096 0.904 43 H 0.101 0.899 44 H 0.093 0.907 45 H 0.100 0.900 46 H 0.135 0.865 47 H 0.139 0.861 48 H 0.139 0.861 49 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.739 -6.593 24.834 25.753 hybrid contribution -1.182 0.259 -0.562 1.334 sum -2.921 -6.334 24.272 25.254 Atomic orbital electron populations 1.22242 0.96092 1.01162 1.03455 1.21478 0.94809 0.83456 1.01973 1.48229 1.63914 1.13375 1.07177 1.19353 0.97713 0.92578 0.77494 1.21433 0.97481 1.31207 1.06247 0.92253 1.24932 0.96512 0.96228 0.96419 1.69927 1.27517 1.41572 1.14357 0.86511 0.83188 0.80260 0.77547 1.20541 1.21154 1.19921 1.19720 0.79817 0.87029 0.84323 1.90715 1.45006 1.17015 1.86758 1.22942 1.02788 0.92458 0.84508 1.86571 1.78416 1.45036 1.14456 1.23734 0.74132 0.87056 0.84633 1.90543 1.42331 1.20288 1.86594 1.21430 1.05194 0.98812 0.88652 1.20510 0.92820 0.99490 0.92943 0.89026 1.22362 0.97233 0.98904 0.96771 1.21069 0.91789 0.98064 1.01121 1.20619 0.94149 0.97267 0.97757 1.20562 0.92343 0.99603 1.00903 1.21055 0.99445 0.95950 0.97200 1.21135 0.95434 0.99574 0.98469 1.21182 0.92750 0.98305 0.98750 1.20403 0.95092 0.96544 0.97354 0.93383 0.90309 0.92540 0.92061 0.90164 0.93731 0.94665 0.92697 0.88728 0.88878 0.86917 0.87417 0.90358 0.89902 0.90660 0.90035 0.86511 0.86148 0.86069 0.84218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.60 10.24 37.16 0.38 -2.22 16 2 C 0.11 1.68 5.98 -4.04 -0.02 1.66 16 3 N -0.59 -12.40 2.46 -175.06 -0.43 -12.83 16 4 C 0.25 6.36 5.20 -5.19 -0.03 6.33 16 5 C -0.52 -14.62 8.92 -34.44 -0.31 -14.92 16 6 H 0.06 1.65 7.42 -52.49 -0.39 1.26 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.36 13.29 55.43 0.74 -25.63 16 9 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 13 C 0.51 10.72 7.75 -10.99 -0.09 10.64 16 14 O -0.52 -13.40 16.08 -14.10 -0.23 -13.63 16 15 C 0.05 0.82 4.50 36.00 0.16 0.98 16 16 O -0.33 -5.43 9.75 -45.91 -0.45 -5.88 16 17 C 0.46 6.19 7.73 36.01 0.28 6.47 16 18 O -0.51 -7.22 12.16 -18.74 -0.23 -7.45 16 19 C -0.10 -1.00 5.21 -27.88 -0.15 -1.15 16 20 C -0.04 -0.35 2.50 -90.74 -0.23 -0.58 16 21 H 0.09 0.86 7.91 -51.93 -0.41 0.45 16 22 C -0.12 -0.75 6.60 -25.33 -0.17 -0.91 16 23 C -0.08 -0.60 6.76 -26.85 -0.18 -0.78 16 24 C -0.10 -0.97 6.14 -104.21 -0.64 -1.61 16 25 C -0.12 -1.11 10.04 -39.54 -0.40 -1.51 16 26 C -0.12 -1.16 10.05 -39.63 -0.40 -1.55 16 27 C -0.13 -1.38 10.05 -39.63 -0.40 -1.78 16 28 C -0.09 -1.10 9.06 -39.54 -0.36 -1.46 16 29 C -0.09 -1.03 5.16 -104.20 -0.54 -1.57 16 30 H 0.05 0.72 7.22 -51.93 -0.37 0.35 16 31 H 0.08 1.42 7.26 -51.93 -0.38 1.05 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.78 6.44 -51.93 -0.33 0.44 16 34 H 0.08 1.21 7.89 -51.93 -0.41 0.80 16 35 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 36 H 0.04 0.91 7.89 -51.93 -0.41 0.50 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.09 1.42 7.18 -51.93 -0.37 1.05 16 39 H 0.09 1.29 7.39 -51.93 -0.38 0.91 16 40 H 0.11 0.84 8.09 -51.93 -0.42 0.42 16 41 H 0.11 1.02 8.13 -51.93 -0.42 0.59 16 42 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.08 0.41 7.86 -51.93 -0.41 0.00 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 47 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 48 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 49 H 0.14 1.80 5.72 -52.48 -0.30 1.50 16 LS Contribution 400.81 15.07 6.04 6.04 Total: -1.00 -34.35 400.81 -10.24 -44.59 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -7.49 Total: 0.36 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -3.17 Total: -2.33 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: 0.31 Total: -38.45 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.90 Total: -26.96 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.35 -10.24 -44.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734629838.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.860 kcal (2) G-P(sol) polarization free energy of solvation -34.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds