Wall clock time and date at job start Wed Apr 1 2020 04:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.46504 * 120.00381 * 269.99975 * 3 2 1 5 5 C 1.50704 * 109.46773 * 90.00257 * 4 3 2 6 6 H 1.07998 * 119.99721 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99850 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99692 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99728 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47060 * 90.00267 * 9 7 5 11 11 H 1.48504 * 109.47035 * 209.99814 * 9 7 5 12 12 H 1.48498 * 109.47691 * 329.99852 * 9 7 5 13 13 C 1.34781 * 119.99786 * 90.00416 * 3 2 1 14 14 O 1.21279 * 120.00132 * 180.02562 * 13 3 2 15 15 C 1.50694 * 120.00287 * 359.97438 * 13 3 2 16 16 O 1.45194 * 109.47579 * 180.02562 * 15 13 3 17 17 C 1.34231 * 117.00040 * 180.02562 * 16 15 13 18 18 O 1.20820 * 120.00336 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99572 * 179.97438 * 17 16 15 20 20 C 1.53007 * 109.47048 * 179.97438 * 19 17 16 21 21 H 1.08998 * 110.27095 * 52.92027 * 20 19 17 22 22 C 1.54342 * 110.30535 * 175.00277 * 20 19 17 23 23 C 1.54340 * 102.39516 * 92.57410 * 22 20 19 24 24 C 1.51366 * 105.17100 * 26.34517 * 23 22 20 25 25 C 1.38501 * 130.39425 * 162.81173 * 24 23 22 26 26 C 1.38098 * 120.21596 * 180.02562 * 25 24 23 27 27 C 1.38255 * 119.93541 * 359.97438 * 26 25 24 28 28 C 1.38096 * 119.93580 * 0.02562 * 27 26 25 29 29 C 1.38214 * 109.75803 * 342.81275 * 24 23 22 30 30 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 31 31 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 32 32 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 34 34 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 35 35 H 1.08992 * 109.47334 * 209.99920 * 4 3 2 36 36 H 1.08994 * 109.46680 * 330.00544 * 4 3 2 37 37 H 0.96996 * 119.99637 * 179.97438 * 8 7 5 38 38 H 1.09000 * 109.47004 * 300.00293 * 15 13 3 39 39 H 1.09005 * 109.47052 * 59.99843 * 15 13 3 40 40 H 1.09000 * 109.47110 * 299.99494 * 19 17 16 41 41 H 1.08997 * 109.47709 * 59.99746 * 19 17 16 42 42 H 1.09003 * 110.82031 * 210.80453 * 22 20 19 43 43 H 1.09002 * 110.82201 * 334.14786 * 22 20 19 44 44 H 1.08996 * 110.30403 * 145.27091 * 23 22 20 45 45 H 1.09007 * 110.30058 * 267.42168 * 23 22 20 46 46 H 1.08002 * 119.89057 * 359.97438 * 25 24 23 47 47 H 1.08001 * 120.03217 * 180.02562 * 26 25 24 48 48 H 1.08009 * 120.03177 * 179.97438 * 27 26 25 49 49 H 1.08005 * 119.89500 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 1.0065 2.7824 -1.7036 6 1 0.1158 2.7254 -1.0956 7 6 0.9947 3.5050 -2.8778 8 7 2.0793 3.5739 -3.6184 9 14 -0.5622 4.3850 -3.4172 10 1 -0.5709 5.7616 -2.8605 11 1 -0.6052 4.4505 -4.9002 12 1 -1.7482 3.6424 -2.9200 13 6 2.2429 2.0165 1.1673 14 8 2.6467 3.1601 1.1673 15 6 1.9914 1.3063 2.4723 16 8 2.3054 2.1960 3.5760 17 6 2.1344 1.7121 4.8163 18 8 1.7352 0.5829 4.9746 19 6 2.4406 2.5776 6.0115 20 6 2.1623 1.7921 7.2947 21 1 2.6901 0.8387 7.2758 22 6 2.5871 2.6152 8.5293 23 6 1.2808 3.3458 8.9059 24 6 0.1681 2.4607 8.3867 25 6 -1.1809 2.4381 8.6996 26 6 -2.0206 1.5267 8.0902 27 6 -1.5140 0.6339 7.1641 28 6 -0.1692 0.6548 6.8508 29 6 0.6745 1.5680 7.4610 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 3.0642 2.7986 -1.1384 36 1 2.5505 1.3453 -2.0283 37 1 2.0709 4.0820 -4.4446 38 1 0.9433 1.0125 2.5299 39 1 2.6213 0.4186 2.5302 40 1 3.4893 2.8737 5.9866 41 1 1.8112 3.4672 5.9867 42 1 2.9122 1.9607 9.3381 43 1 3.3714 3.3263 8.2697 44 1 1.2056 3.4524 9.9881 45 1 1.2421 4.3233 8.4252 46 1 -1.5773 3.1350 9.4233 47 1 -3.0721 1.5120 8.3361 48 1 -2.1692 -0.0799 6.6868 49 1 0.2259 -0.0433 6.1276 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000734629838.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:09 Heat of formation + Delta-G solvation = -117.010628 kcal Electronic energy + Delta-G solvation = -30092.715606 eV Core-core repulsion = 25983.813591 eV Total energy + Delta-G solvation = -4108.902014 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.98061 -41.05101 -40.38049 -37.71114 -37.03015 -36.83708 -34.89622 -32.96098 -31.73063 -31.31543 -30.46526 -29.66812 -28.48399 -26.64998 -24.74214 -24.21790 -23.53369 -22.47352 -21.77635 -20.78441 -20.26756 -18.96448 -18.75125 -18.06699 -17.94206 -17.42361 -17.13286 -16.89938 -16.40460 -16.09022 -15.89326 -15.84749 -15.48243 -14.93818 -14.78004 -14.49382 -14.26742 -14.05753 -13.88286 -13.79018 -13.64784 -13.56032 -13.33455 -13.30772 -13.11374 -13.01387 -12.73963 -12.56638 -12.49934 -12.23465 -12.04155 -11.98272 -11.92759 -11.76353 -11.68478 -11.65598 -11.59699 -11.32753 -10.73123 -10.64001 -9.68083 -9.56339 -9.42383 -8.22933 -6.35768 0.44920 0.52004 1.13995 1.31012 1.36172 1.38984 1.48159 1.61414 2.32983 2.45725 2.85898 3.07397 3.42449 3.46653 3.56121 3.69977 3.85212 3.97350 3.99034 4.15361 4.17347 4.22833 4.25688 4.36339 4.38969 4.41721 4.55286 4.56071 4.61975 4.71258 4.86406 4.86897 4.95082 4.98882 5.00228 5.02422 5.13345 5.19681 5.22573 5.25902 5.35762 5.41095 5.44979 5.56503 5.60391 5.68524 5.79255 5.80364 6.05104 6.16332 6.56380 6.71294 6.72752 7.21119 7.37203 8.84827 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014549 B = 0.002362 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.050213 B =11853.907092 C =12160.183645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.099 3.901 3 N -0.596 5.596 4 C 0.261 3.739 5 C -0.536 4.536 6 H 0.055 0.945 7 C 0.008 3.992 8 N -0.928 5.928 9 Si 0.963 3.037 10 H -0.282 1.282 11 H -0.275 1.275 12 H -0.263 1.263 13 C 0.499 3.501 14 O -0.578 6.578 15 C 0.063 3.937 16 O -0.353 6.353 17 C 0.457 3.543 18 O -0.517 6.517 19 C -0.099 4.099 20 C -0.037 4.037 21 H 0.085 0.915 22 C -0.107 4.107 23 C -0.083 4.083 24 C -0.106 4.106 25 C -0.125 4.125 26 C -0.125 4.125 27 C -0.144 4.144 28 C -0.116 4.116 29 C -0.112 4.112 30 H 0.046 0.954 31 H 0.044 0.956 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.000 1.000 36 H 0.031 0.969 37 H 0.267 0.733 38 H 0.110 0.890 39 H 0.123 0.877 40 H 0.139 0.861 41 H 0.112 0.888 42 H 0.087 0.913 43 H 0.104 0.896 44 H 0.091 0.909 45 H 0.089 0.911 46 H 0.138 0.862 47 H 0.141 0.859 48 H 0.129 0.871 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.888 -7.341 27.184 28.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.023 4.023 3 N -0.328 5.328 4 C 0.140 3.860 5 C -0.575 4.575 6 H 0.073 0.927 7 C -0.191 4.191 8 N -0.568 5.568 9 Si 0.788 3.212 10 H -0.208 1.208 11 H -0.200 1.200 12 H -0.187 1.187 13 C 0.286 3.714 14 O -0.458 6.458 15 C -0.013 4.013 16 O -0.269 6.269 17 C 0.302 3.698 18 O -0.406 6.406 19 C -0.136 4.136 20 C -0.056 4.056 21 H 0.103 0.897 22 C -0.144 4.144 23 C -0.119 4.119 24 C -0.106 4.106 25 C -0.143 4.143 26 C -0.143 4.143 27 C -0.162 4.162 28 C -0.134 4.134 29 C -0.112 4.112 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.113 0.887 33 H 0.120 0.880 34 H 0.105 0.895 35 H 0.018 0.982 36 H 0.049 0.951 37 H 0.076 0.924 38 H 0.128 0.872 39 H 0.141 0.859 40 H 0.156 0.844 41 H 0.130 0.870 42 H 0.105 0.895 43 H 0.122 0.878 44 H 0.109 0.891 45 H 0.107 0.893 46 H 0.156 0.844 47 H 0.159 0.841 48 H 0.147 0.853 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.721 -7.044 27.010 28.046 hybrid contribution -0.884 0.316 -1.184 1.511 sum -3.605 -6.727 25.826 26.930 Atomic orbital electron populations 1.22176 0.95394 1.03089 1.01694 1.21853 0.95358 0.80710 1.04357 1.48223 1.63673 1.15184 1.05741 1.18844 0.95688 0.91799 0.79679 1.21680 0.97871 1.31558 1.06372 0.92673 1.25809 0.99756 0.96952 0.96539 1.70040 1.29533 1.42386 1.14836 0.85481 0.79535 0.78648 0.77567 1.20768 1.19976 1.18693 1.20575 0.78365 0.86549 0.85885 1.90675 1.47583 1.19721 1.87777 1.22754 1.04214 0.92234 0.82125 1.86584 1.79054 1.45816 1.15469 1.24500 0.73558 0.87522 0.84268 1.90550 1.42686 1.20928 1.86451 1.21605 1.06786 0.98217 0.87008 1.20562 0.91692 0.99637 0.93683 0.89703 1.22394 0.97485 0.98986 0.95581 1.21153 0.90891 0.97801 1.02089 1.21027 0.94962 0.97298 0.97273 1.20922 0.92488 0.99760 1.01084 1.21355 1.00647 0.95582 0.96733 1.21340 0.95324 1.00348 0.99146 1.21216 0.93671 0.99054 0.99455 1.20701 0.96182 0.96674 0.97692 0.93441 0.93699 0.88731 0.87968 0.89481 0.98179 0.95149 0.92424 0.87222 0.85926 0.84351 0.87005 0.89451 0.87779 0.89090 0.89255 0.84413 0.84146 0.85258 0.85851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.76 10.24 71.98 0.74 -4.02 16 2 C 0.10 2.97 5.98 86.38 0.52 3.49 16 3 N -0.60 -25.21 2.46 -826.16 -2.03 -27.24 16 4 C 0.26 13.96 5.20 85.63 0.45 14.41 16 5 C -0.54 -30.67 8.92 25.60 0.23 -30.44 16 6 H 0.06 3.13 7.42 -2.91 -0.02 3.11 16 7 C 0.01 0.48 5.46 84.66 0.46 0.94 16 8 N -0.93 -56.00 13.29 21.45 0.28 -55.71 16 9 Si 0.96 45.07 29.54 68.60 2.03 47.10 16 10 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 11 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 12 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 13 C 0.50 21.44 7.75 87.65 0.68 22.12 16 14 O -0.58 -31.07 16.08 15.78 0.25 -30.81 16 15 C 0.06 2.00 4.50 71.23 0.32 2.32 16 16 O -0.35 -11.43 9.75 -45.07 -0.44 -11.87 16 17 C 0.46 11.82 7.73 71.24 0.55 12.37 16 18 O -0.52 -14.25 12.16 21.98 0.27 -13.98 16 19 C -0.10 -1.75 5.21 29.85 0.16 -1.59 16 20 C -0.04 -0.61 2.50 -10.87 -0.03 -0.64 16 21 H 0.08 1.49 7.91 -2.39 -0.02 1.47 16 22 C -0.11 -1.07 6.60 31.50 0.21 -0.86 16 23 C -0.08 -0.95 6.76 30.51 0.21 -0.74 16 24 C -0.11 -1.90 6.14 -19.60 -0.12 -2.02 16 25 C -0.12 -2.18 10.04 22.30 0.22 -1.95 16 26 C -0.13 -2.30 10.05 22.24 0.22 -2.08 16 27 C -0.14 -3.06 10.05 22.24 0.22 -2.84 16 28 C -0.12 -2.79 9.06 22.30 0.20 -2.59 16 29 C -0.11 -2.36 5.16 -19.59 -0.10 -2.46 16 30 H 0.05 1.35 7.22 -2.39 -0.02 1.34 16 31 H 0.04 1.60 7.26 -2.39 -0.02 1.58 16 32 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.10 2.26 6.44 -2.39 -0.02 2.25 16 34 H 0.09 2.50 7.89 -2.39 -0.02 2.48 16 35 H 0.00 0.01 7.42 -2.39 -0.02 -0.01 16 36 H 0.03 1.63 7.89 -2.39 -0.02 1.61 16 37 H 0.27 15.12 8.31 -92.71 -0.77 14.34 16 38 H 0.11 3.12 7.18 -2.39 -0.02 3.11 16 39 H 0.12 3.10 7.39 -2.38 -0.02 3.08 16 40 H 0.14 1.72 8.09 -2.39 -0.02 1.70 16 41 H 0.11 1.92 8.13 -2.39 -0.02 1.90 16 42 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.10 0.63 7.86 -2.39 -0.02 0.61 16 44 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 46 H 0.14 1.73 8.06 -2.91 -0.02 1.70 16 47 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 48 H 0.13 2.35 8.06 -2.91 -0.02 2.33 16 49 H 0.12 3.27 5.72 -2.91 -0.02 3.25 16 Total: -1.00 -78.60 400.81 6.44 -72.15 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 0.95 Total: 16.96 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: 5.13 Total: 3.42 kcal Atomic # 7 Polarization: -81.21 SS G_CDS: -1.74 Total: -82.96 kcal Atomic # 8 Polarization: -56.75 SS G_CDS: 0.08 Total: -56.67 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -78.60 6.44 -72.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734629838.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.857 kcal (2) G-P(sol) polarization free energy of solvation -78.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds