Wall clock time and date at job start Wed Apr 1 2020 03:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.47591 * 2 1 4 4 O 1.45205 * 109.47221 * 240.00167 * 2 1 3 5 5 C 1.34224 * 116.99894 * 90.00094 * 4 2 1 6 6 O 1.20826 * 120.00437 * 0.02562 * 5 4 2 7 7 C 1.50703 * 119.99992 * 180.02562 * 5 4 2 8 8 C 1.50706 * 112.84677 * 309.66874 * 7 5 4 9 9 C 1.38235 * 120.00090 * 283.05338 * 8 7 5 10 10 C 1.38234 * 120.00320 * 179.97438 * 9 8 7 11 11 C 1.38238 * 119.99537 * 359.97438 * 10 9 8 12 12 C 1.38238 * 120.00219 * 0.02562 * 11 10 9 13 13 C 1.38234 * 119.99879 * 103.01955 * 8 7 5 14 14 C 1.53774 * 113.69261 * 80.93626 * 7 5 4 15 15 C 1.53773 * 87.08293 * 89.12790 * 14 7 5 16 16 C 1.53782 * 113.61470 * 178.47496 * 7 5 4 17 17 C 1.50706 * 109.46910 * 120.00335 * 2 1 3 18 18 O 1.21282 * 119.99668 * 119.99526 * 17 2 1 19 19 N 1.34771 * 120.00122 * 299.99910 * 17 2 1 20 20 C 1.46499 * 119.99815 * 0.02562 * 19 17 2 21 21 C 1.46490 * 120.00102 * 179.97438 * 19 17 2 22 22 C 1.50703 * 109.47211 * 90.00225 * 21 19 17 23 23 H 1.08003 * 119.99872 * 359.97438 * 22 21 19 24 24 C 1.37878 * 119.99832 * 179.97438 * 22 21 19 25 25 N 1.31505 * 120.00548 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99584 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47713 * 359.97438 * 26 24 22 28 28 H 1.48505 * 109.47348 * 120.00182 * 26 24 22 29 29 H 1.48502 * 109.47204 * 240.00048 * 26 24 22 30 30 H 1.09005 * 109.46841 * 59.99717 * 1 2 3 31 31 H 1.08998 * 109.47515 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47364 * 300.00026 * 1 2 3 33 33 H 1.08004 * 120.00102 * 0.26509 * 9 8 7 34 34 H 1.07994 * 120.00375 * 180.02562 * 10 9 8 35 35 H 1.08001 * 119.99964 * 179.97438 * 11 10 9 36 36 H 1.07997 * 119.99769 * 179.97438 * 12 11 10 37 37 H 1.08000 * 120.00170 * 0.05476 * 13 8 7 38 38 H 1.09003 * 113.61783 * 203.67707 * 14 7 5 39 39 H 1.09001 * 113.61469 * 334.58154 * 14 7 5 40 40 H 1.09005 * 113.61883 * 270.88843 * 15 14 7 41 41 H 1.08998 * 113.62165 * 139.98230 * 15 14 7 42 42 H 1.08996 * 113.61354 * 25.34404 * 16 7 5 43 43 H 1.09000 * 113.61073 * 156.16909 * 16 7 5 44 44 H 1.08994 * 109.47561 * 89.99787 * 20 19 17 45 45 H 1.08998 * 109.47170 * 209.99912 * 20 19 17 46 46 H 1.09003 * 109.47148 * 329.99855 * 20 19 17 47 47 H 1.09001 * 109.47423 * 209.99694 * 21 19 17 48 48 H 1.08999 * 109.47648 * 329.99975 * 21 19 17 49 49 H 0.97002 * 120.00542 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0140 -0.6845 -1.1856 5 6 2.2171 0.0641 -2.2811 6 8 1.9982 1.2519 -2.2503 7 6 2.7183 -0.5771 -3.5495 8 6 3.9361 -1.4370 -3.3289 9 6 5.1757 -0.8491 -3.1591 10 6 6.2928 -1.6377 -2.9563 11 6 6.1701 -3.0143 -2.9227 12 6 4.9305 -3.6021 -3.0925 13 6 3.8136 -2.8134 -3.2957 14 6 1.6163 -1.2686 -4.3695 15 6 1.4024 0.0816 -5.0737 16 6 2.8635 0.4075 -4.7218 17 6 2.0322 -0.7105 1.2305 18 8 2.7294 -1.6967 1.1191 19 7 1.7067 -0.2501 2.4546 20 6 0.8640 0.9407 2.5890 21 6 2.1944 -0.9411 3.6506 22 6 3.5222 -0.3582 4.0612 23 1 3.9591 0.4462 3.4881 24 6 4.1790 -0.8519 5.1683 25 7 3.6468 -1.8311 5.8664 26 14 5.8251 -0.1299 5.6767 27 1 6.2037 0.9524 4.7330 28 1 5.7193 0.4250 7.0502 29 1 6.8613 -1.1933 5.6510 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 5.2708 0.2265 -3.1803 34 1 7.2611 -1.1785 -2.8232 35 1 7.0428 -3.6305 -2.7646 36 1 4.8348 -4.6775 -3.0666 37 1 2.8452 -3.2727 -3.4286 38 1 1.9896 -2.0513 -5.0300 39 1 0.7632 -1.5892 -3.7715 40 1 0.6788 0.7252 -4.5734 41 1 1.2209 -0.0084 -6.1447 42 1 3.0172 1.4401 -4.4082 43 1 3.5787 0.0837 -5.4779 44 1 -0.1838 0.6425 2.6225 45 1 1.1217 1.4662 3.5085 46 1 1.0272 1.5994 1.7361 47 1 1.4764 -0.8155 4.4611 48 1 2.3152 -2.0024 3.4334 49 1 4.1087 -2.1782 6.6456 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744519427.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:53 Heat of formation + Delta-G solvation = -82.179457 kcal Electronic energy + Delta-G solvation = -31180.597776 eV Core-core repulsion = 27073.206155 eV Total energy + Delta-G solvation = -4107.391621 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.51111 -41.09979 -40.09817 -38.76393 -37.41424 -36.75165 -34.95611 -33.12211 -32.18613 -31.87037 -29.61797 -27.89489 -27.55674 -26.88535 -25.95731 -24.61840 -23.33922 -23.07529 -22.49258 -20.57298 -20.41977 -18.88075 -18.70896 -18.13183 -17.96498 -17.36777 -17.17508 -17.00783 -16.51573 -16.20268 -15.88723 -15.80837 -15.48220 -15.03325 -14.78731 -14.55927 -14.33086 -14.31653 -14.15762 -13.74357 -13.68992 -13.55578 -13.41104 -13.35705 -13.05752 -12.97866 -12.84795 -12.64484 -12.58864 -12.46303 -12.25376 -12.15832 -12.06165 -11.94513 -11.72426 -11.50888 -11.41995 -11.33378 -10.68017 -10.65203 -9.84071 -9.68002 -9.54703 -8.26604 -6.41141 0.31537 0.47520 0.95921 1.25290 1.33491 1.36054 1.47417 1.59040 2.27637 2.39940 2.80798 3.03309 3.30725 3.36049 3.45252 3.51566 3.58553 3.73973 3.78172 3.81006 4.07940 4.12330 4.24952 4.27755 4.36360 4.50055 4.57702 4.59903 4.63944 4.66619 4.72608 4.75885 4.83191 4.92061 4.95507 4.98683 5.00644 5.05997 5.07300 5.11143 5.16058 5.23191 5.39640 5.48361 5.53091 5.58211 5.59454 5.75322 6.00637 6.06956 6.47159 6.60520 6.67413 7.17671 7.33092 8.80916 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010911 B = 0.003481 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.631327 B = 8041.226396 C = 9598.466910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.077 3.923 3 H 0.110 0.890 4 O -0.336 6.336 5 C 0.488 3.512 6 O -0.519 6.519 7 C -0.052 4.052 8 C -0.082 4.082 9 C -0.127 4.127 10 C -0.130 4.130 11 C -0.127 4.127 12 C -0.128 4.128 13 C -0.108 4.108 14 C -0.111 4.111 15 C -0.133 4.133 16 C -0.106 4.106 17 C 0.499 3.501 18 O -0.576 6.576 19 N -0.599 5.599 20 C 0.067 3.933 21 C 0.261 3.739 22 C -0.547 4.547 23 H 0.049 0.951 24 C 0.011 3.989 25 N -0.924 5.924 26 Si 0.966 3.034 27 H -0.271 1.271 28 H -0.265 1.265 29 H -0.281 1.281 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.113 0.887 33 H 0.121 0.879 34 H 0.137 0.863 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.138 0.862 38 H 0.121 0.879 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.103 0.897 42 H 0.072 0.928 43 H 0.114 0.886 44 H 0.087 0.913 45 H 0.075 0.925 46 H 0.086 0.914 47 H 0.035 0.965 48 H 0.000 1.000 49 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.228 3.626 -23.627 24.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.019 3.981 3 H 0.127 0.873 4 O -0.251 6.251 5 C 0.331 3.669 6 O -0.408 6.408 7 C -0.054 4.054 8 C -0.082 4.082 9 C -0.145 4.145 10 C -0.148 4.148 11 C -0.145 4.145 12 C -0.146 4.146 13 C -0.126 4.126 14 C -0.149 4.149 15 C -0.170 4.170 16 C -0.143 4.143 17 C 0.286 3.714 18 O -0.456 6.456 19 N -0.331 5.331 20 C -0.074 4.074 21 C 0.141 3.859 22 C -0.586 4.586 23 H 0.068 0.932 24 C -0.188 4.188 25 N -0.564 5.564 26 Si 0.790 3.210 27 H -0.195 1.195 28 H -0.190 1.190 29 H -0.206 1.206 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.131 0.869 33 H 0.139 0.861 34 H 0.155 0.845 35 H 0.159 0.841 36 H 0.160 0.840 37 H 0.155 0.845 38 H 0.139 0.861 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.122 0.878 42 H 0.091 0.909 43 H 0.133 0.867 44 H 0.106 0.894 45 H 0.094 0.906 46 H 0.104 0.896 47 H 0.052 0.948 48 H 0.019 0.981 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.946 3.373 -23.453 24.205 hybrid contribution 1.112 0.203 1.152 1.614 sum -3.834 3.576 -22.301 22.909 Atomic orbital electron populations 1.22405 0.89030 1.04597 1.06206 1.22544 0.98007 0.96468 0.81112 0.87282 1.86644 1.76559 1.42113 1.19792 1.23508 0.73074 0.85335 0.84952 1.90599 1.49095 1.16780 1.84310 1.20725 0.96224 0.99276 0.89131 1.19391 0.92978 0.93938 1.01894 1.21155 0.92816 1.00175 1.00370 1.21391 0.99145 0.94405 0.99879 1.21513 0.98593 0.95201 0.99148 1.21476 0.92678 1.01082 0.99327 1.21238 0.99661 0.92773 0.98951 1.23091 0.95717 0.98601 0.97447 1.22863 0.95757 0.95737 1.02676 1.23005 0.99222 0.98123 0.93974 1.20635 0.80723 0.84897 0.85162 1.90673 1.39407 1.28671 1.86832 1.48029 1.50169 1.29566 1.05372 1.22243 0.94794 0.86310 1.04063 1.18836 0.93948 0.91737 0.81429 1.21707 1.06035 1.19276 1.11563 0.93231 1.25806 1.01682 0.95184 0.96135 1.70035 1.40572 1.27028 1.18755 0.85402 0.78842 0.78282 0.78491 1.19518 1.19005 1.20636 0.89379 0.91219 0.86890 0.86139 0.84490 0.84137 0.84003 0.84457 0.86053 0.90559 0.90623 0.87822 0.90891 0.86740 0.89450 0.90612 0.89551 0.94751 0.98149 0.92248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.05 9.18 71.98 0.66 -3.39 16 2 C 0.08 2.63 2.18 29.85 0.07 2.69 16 3 H 0.11 3.59 6.42 -2.39 -0.02 3.57 16 4 O -0.34 -11.98 9.27 -45.00 -0.42 -12.40 16 5 C 0.49 14.80 6.70 71.24 0.48 15.28 16 6 O -0.52 -16.57 15.05 21.96 0.33 -16.24 16 7 C -0.05 -1.22 1.03 -53.15 -0.05 -1.27 16 8 C -0.08 -2.11 4.70 -19.86 -0.09 -2.21 16 9 C -0.13 -3.35 9.39 22.27 0.21 -3.14 16 10 C -0.13 -3.23 10.05 22.27 0.22 -3.01 16 11 C -0.13 -3.00 10.05 22.27 0.22 -2.78 16 12 C -0.13 -3.03 10.05 22.27 0.22 -2.81 16 13 C -0.11 -2.67 9.02 22.27 0.20 -2.47 16 14 C -0.11 -1.83 6.20 31.12 0.19 -1.64 16 15 C -0.13 -1.93 7.75 31.12 0.24 -1.69 16 16 C -0.11 -1.89 6.67 31.12 0.21 -1.68 16 17 C 0.50 22.48 7.15 87.66 0.63 23.10 16 18 O -0.58 -32.26 16.08 15.76 0.25 -32.01 16 19 N -0.60 -26.08 2.86 -851.16 -2.43 -28.51 16 20 C 0.07 2.01 8.80 127.77 1.12 3.13 16 21 C 0.26 14.24 5.16 85.64 0.44 14.68 16 22 C -0.55 -32.14 9.39 25.60 0.24 -31.90 16 23 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 24 C 0.01 0.66 5.46 84.66 0.46 1.12 16 25 N -0.92 -55.98 13.29 21.45 0.28 -55.70 16 26 Si 0.97 45.54 29.54 68.60 2.03 47.56 16 27 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 28 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 29 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 30 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 31 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.11 2.28 4.53 -2.39 -0.01 2.27 16 33 H 0.12 2.98 8.03 -2.91 -0.02 2.96 16 34 H 0.14 2.81 8.06 -2.91 -0.02 2.78 16 35 H 0.14 2.65 8.06 -2.91 -0.02 2.62 16 36 H 0.14 2.69 8.06 -2.91 -0.02 2.66 16 37 H 0.14 2.85 7.02 -2.91 -0.02 2.83 16 38 H 0.12 1.51 7.44 -2.39 -0.02 1.49 16 39 H 0.08 1.30 8.10 -2.39 -0.02 1.28 16 40 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 41 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.07 1.49 7.41 -2.39 -0.02 1.47 16 43 H 0.11 1.62 8.09 -2.39 -0.02 1.60 16 44 H 0.09 2.01 6.95 -2.39 -0.02 1.99 16 45 H 0.08 2.33 8.07 -2.39 -0.02 2.31 16 46 H 0.09 2.10 6.01 -2.39 -0.01 2.09 16 47 H 0.03 1.86 8.07 -2.39 -0.02 1.84 16 48 H 0.00 0.02 7.42 -2.39 -0.02 0.01 16 49 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -80.33 402.75 6.67 -73.66 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 0.95 Total: 21.60 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: 5.67 Total: 2.02 kcal Atomic # 7 Polarization: -82.06 SS G_CDS: -2.15 Total: -84.20 kcal Atomic # 8 Polarization: -60.81 SS G_CDS: 0.17 Total: -60.64 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.56 kcal Total: -80.33 6.67 -73.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744519427.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.515 kcal (2) G-P(sol) polarization free energy of solvation -80.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds