Wall clock time and date at job start Wed Apr 1 2020 03:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47333 * 2 1 4 4 O 1.45196 * 109.47271 * 239.99821 * 2 1 3 5 5 C 1.34235 * 116.99925 * 89.12121 * 4 2 1 6 6 O 1.20819 * 119.99981 * 5.10021 * 5 4 2 7 7 C 1.50701 * 120.00050 * 185.11026 * 5 4 2 8 8 C 1.53003 * 115.55212 * 89.41629 * 7 5 4 9 9 C 1.50696 * 109.46784 * 39.96862 * 8 7 5 10 10 C 1.38234 * 120.00081 * 263.66115 * 9 8 7 11 11 C 1.38245 * 119.99991 * 179.79337 * 10 9 8 12 12 C 1.38229 * 119.99566 * 0.43982 * 11 10 9 13 13 C 1.38234 * 120.00622 * 359.81521 * 12 11 10 14 14 C 1.38237 * 120.00012 * 83.93828 * 9 8 7 15 15 C 1.53004 * 117.49534 * 303.74817 * 7 5 4 16 16 C 1.53011 * 60.03094 * 252.47630 * 15 7 5 17 17 C 1.50702 * 109.46820 * 120.00048 * 2 1 3 18 18 O 1.21288 * 119.99859 * 109.45616 * 17 2 1 19 19 N 1.34773 * 119.99925 * 289.45452 * 17 2 1 20 20 C 1.46496 * 120.00353 * 0.02562 * 19 17 2 21 21 C 1.46504 * 119.99825 * 180.02562 * 19 17 2 22 22 C 1.50701 * 109.47153 * 90.00064 * 21 19 17 23 23 H 1.07996 * 119.99860 * 359.97438 * 22 21 19 24 24 C 1.37877 * 119.99811 * 180.02562 * 22 21 19 25 25 N 1.31513 * 120.00318 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99674 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47110 * 359.97438 * 26 24 22 28 28 H 1.48504 * 109.46840 * 119.99698 * 26 24 22 29 29 H 1.48496 * 109.46911 * 239.99741 * 26 24 22 30 30 H 1.08999 * 109.47328 * 299.99836 * 1 2 3 31 31 H 1.09003 * 109.46703 * 59.99944 * 1 2 3 32 32 H 1.08998 * 109.47287 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47061 * 159.96766 * 8 7 5 34 34 H 1.08997 * 109.47041 * 279.96851 * 8 7 5 35 35 H 1.08001 * 120.00049 * 359.97438 * 10 9 8 36 36 H 1.07998 * 119.99548 * 180.27139 * 11 10 9 37 37 H 1.08004 * 119.99361 * 179.83438 * 12 11 10 38 38 H 1.07994 * 120.00269 * 180.02562 * 13 12 11 39 39 H 1.08000 * 119.99976 * 359.97438 * 14 9 8 40 40 H 1.08996 * 117.50009 * 359.97438 * 15 7 5 41 41 H 1.08997 * 117.49597 * 144.98009 * 15 7 5 42 42 H 1.09002 * 117.49772 * 107.49688 * 16 15 7 43 43 H 1.08999 * 117.49858 * 252.52339 * 16 15 7 44 44 H 1.08999 * 109.47208 * 89.99975 * 20 19 17 45 45 H 1.08995 * 109.47372 * 209.99837 * 20 19 17 46 46 H 1.09004 * 109.46964 * 329.99990 * 20 19 17 47 47 H 1.08996 * 109.47485 * 210.00344 * 21 19 17 48 48 H 1.08999 * 109.47154 * 330.00218 * 21 19 17 49 49 H 0.97001 * 120.00149 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6845 -1.1855 5 6 2.1999 0.0608 -2.2863 6 8 2.0548 1.2592 -2.2361 7 6 2.5892 -0.5972 -3.5850 8 6 1.4263 -1.0455 -4.4724 9 6 0.3377 -0.0040 -4.4379 10 6 -0.7318 -0.1503 -3.5744 11 6 -1.7282 0.8074 -3.5397 12 6 -1.6596 1.9066 -4.3750 13 6 -0.5928 2.0503 -5.2423 14 6 0.4058 1.0949 -5.2739 15 6 3.8538 -1.4585 -3.5891 16 6 3.8562 -0.0939 -4.2812 17 6 2.0323 -0.7104 1.2305 18 8 2.5642 -1.7957 1.1294 19 7 1.8903 -0.1398 2.4432 20 6 1.2473 1.1708 2.5653 21 6 2.3791 -0.8302 3.6393 22 6 3.8095 -0.4334 3.8991 23 1 4.3051 0.2631 3.2391 24 6 4.4858 -0.9603 4.9789 25 7 3.8825 -1.8088 5.7825 26 14 6.2592 -0.4689 5.3006 27 1 6.7035 0.4912 4.2585 28 1 6.3613 0.1688 6.6378 29 1 7.1224 -1.6765 5.2607 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.7778 -1.1700 -5.4966 34 1 1.0336 -1.9937 -4.1052 35 1 -0.7875 -1.0112 -2.9247 36 1 -2.5615 0.6953 -2.8619 37 1 -2.4394 2.6534 -4.3498 38 1 -0.5391 2.9093 -5.8946 39 1 1.2393 1.2071 -5.9514 40 1 4.4043 -1.5488 -2.6527 41 1 3.8571 -2.3446 -4.2238 42 1 4.4082 0.7135 -3.8000 43 1 3.8607 -0.0824 -5.3711 44 1 0.1745 1.0376 2.7044 45 1 1.6618 1.7004 3.4231 46 1 1.4272 1.7496 1.6593 47 1 1.7640 -0.5534 4.4955 48 1 2.3233 -1.9078 3.4852 49 1 4.3583 -2.1792 6.5424 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000752608356.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:47 Heat of formation + Delta-G solvation = -65.590627 kcal Electronic energy + Delta-G solvation = -30971.939132 eV Core-core repulsion = 26865.266856 eV Total energy + Delta-G solvation = -4106.672276 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.94233 -39.51112 -38.87757 -37.45073 -36.13285 -34.88632 -32.85062 -32.61778 -31.54378 -31.03409 -27.77029 -27.51337 -26.12563 -25.21158 -23.86018 -22.87499 -22.53673 -22.15907 -21.64676 -19.77184 -18.78708 -17.59885 -16.91662 -16.64646 -16.52107 -16.15293 -15.97341 -15.42323 -15.30762 -15.04593 -14.89362 -14.56644 -14.04315 -13.80218 -13.59255 -13.39182 -13.30656 -13.04583 -12.85047 -12.68655 -12.49408 -12.29862 -12.10607 -12.04791 -11.78095 -11.73945 -11.49299 -11.42059 -11.23498 -11.20084 -10.91185 -10.86408 -10.67281 -10.55592 -10.43084 -10.18158 -10.10323 -9.64083 -9.05223 -8.89029 -8.86615 -8.46190 -7.72914 -6.06969 -4.11806 1.17748 1.26668 2.22734 2.45138 3.27271 3.28866 3.36619 3.38182 3.41536 3.61122 3.87252 4.27670 4.42502 4.47405 4.59245 4.61785 4.72964 4.82974 4.85399 4.91361 4.97896 5.03853 5.10860 5.20531 5.27760 5.33675 5.37193 5.38525 5.48802 5.52508 5.61192 5.67859 5.69637 5.70742 5.85756 5.86702 5.89254 5.89600 6.00797 6.21245 6.30060 6.36443 6.43755 6.50514 6.85498 6.98152 7.38118 7.46303 7.82544 7.89697 8.19285 8.29207 8.84469 8.99431 9.53374 11.01214 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015908 B = 0.002822 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.717160 B = 9919.385282 C =10874.722518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.069 3.931 3 H 0.103 0.897 4 O -0.320 6.320 5 C 0.499 3.501 6 O -0.497 6.497 7 C -0.128 4.128 8 C -0.035 4.035 9 C -0.087 4.087 10 C -0.114 4.114 11 C -0.118 4.118 12 C -0.121 4.121 13 C -0.119 4.119 14 C -0.101 4.101 15 C -0.152 4.152 16 C -0.145 4.145 17 C 0.509 3.491 18 O -0.519 6.519 19 N -0.596 5.596 20 C 0.077 3.923 21 C 0.246 3.754 22 C -0.528 4.528 23 H 0.058 0.942 24 C 0.061 3.939 25 N -0.894 5.894 26 Si 0.898 3.102 27 H -0.273 1.273 28 H -0.283 1.283 29 H -0.282 1.282 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.101 0.899 43 H 0.109 0.891 44 H 0.049 0.951 45 H 0.078 0.922 46 H 0.057 0.943 47 H 0.036 0.964 48 H 0.046 0.954 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.998 5.867 -22.980 25.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.011 3.989 3 H 0.121 0.879 4 O -0.236 6.236 5 C 0.341 3.659 6 O -0.384 6.384 7 C -0.129 4.129 8 C -0.072 4.072 9 C -0.087 4.087 10 C -0.132 4.132 11 C -0.136 4.136 12 C -0.139 4.139 13 C -0.137 4.137 14 C -0.119 4.119 15 C -0.189 4.189 16 C -0.182 4.182 17 C 0.293 3.707 18 O -0.395 6.395 19 N -0.329 5.329 20 C -0.067 4.067 21 C 0.128 3.872 22 C -0.567 4.567 23 H 0.076 0.924 24 C -0.141 4.141 25 N -0.533 5.533 26 Si 0.726 3.274 27 H -0.198 1.198 28 H -0.209 1.209 29 H -0.208 1.208 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.120 0.880 43 H 0.127 0.873 44 H 0.068 0.932 45 H 0.097 0.903 46 H 0.076 0.924 47 H 0.054 0.946 48 H 0.064 0.936 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.723 5.531 -22.779 25.377 hybrid contribution 0.908 0.592 0.488 1.189 sum -8.815 6.123 -22.291 24.740 Atomic orbital electron populations 1.22218 0.92453 1.03879 1.03850 1.22626 0.95669 0.97611 0.83035 0.87933 1.86631 1.76343 1.41624 1.18964 1.22383 0.73232 0.85637 0.84641 1.90634 1.47094 1.15774 1.84902 1.20873 0.92081 1.07065 0.92887 1.20107 0.91092 0.97112 0.98870 1.19755 0.95615 0.96346 0.97018 1.21117 0.94187 0.99502 0.98435 1.21113 0.98856 0.94504 0.99090 1.21132 0.98442 0.97897 0.96416 1.21102 0.94560 0.98852 0.99173 1.20948 0.98332 0.93792 0.98863 1.23217 0.97126 0.94880 1.03709 1.23200 0.96386 0.98428 1.00205 1.19764 0.80631 0.86479 0.83817 1.90701 1.42507 1.20776 1.85495 1.48078 1.57947 1.19312 1.07603 1.21808 0.96821 0.85434 1.02677 1.19353 0.94277 0.93822 0.79775 1.21465 0.97376 1.26946 1.10882 0.92392 1.24932 0.98447 0.94844 0.95839 1.69939 1.37139 1.30302 1.15920 0.86434 0.84571 0.78452 0.77939 1.19792 1.20899 1.20804 0.89692 0.91169 0.90971 0.89231 0.89457 0.86095 0.86112 0.86291 0.86243 0.86258 0.87274 0.87232 0.88019 0.87257 0.93221 0.90275 0.92427 0.94611 0.93639 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 9.36 37.16 0.35 -1.91 16 2 C 0.07 1.19 2.20 -27.88 -0.06 1.13 16 3 H 0.10 1.75 5.80 -51.93 -0.30 1.45 16 4 O -0.32 -5.62 9.44 -45.85 -0.43 -6.05 16 5 C 0.50 7.66 5.72 36.01 0.21 7.87 16 6 O -0.50 -8.47 16.10 -18.74 -0.30 -8.77 16 7 C -0.13 -1.46 2.26 -155.62 -0.35 -1.82 16 8 C -0.03 -0.32 5.48 -27.88 -0.15 -0.47 16 9 C -0.09 -0.92 4.13 -104.63 -0.43 -1.36 16 10 C -0.11 -1.24 8.79 -39.58 -0.35 -1.59 16 11 C -0.12 -1.18 10.05 -39.58 -0.40 -1.57 16 12 C -0.12 -1.15 10.05 -39.59 -0.40 -1.55 16 13 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 14 C -0.10 -1.01 9.73 -39.58 -0.38 -1.40 16 15 C -0.15 -1.54 9.95 -26.72 -0.27 -1.81 16 16 C -0.15 -1.36 9.88 -26.69 -0.26 -1.63 16 17 C 0.51 11.12 7.04 -10.99 -0.08 11.04 16 18 O -0.52 -13.63 16.12 -13.87 -0.22 -13.86 16 19 N -0.60 -12.85 2.86 -182.96 -0.52 -13.37 16 20 C 0.08 1.23 9.09 59.84 0.54 1.77 16 21 C 0.25 6.47 5.16 -5.19 -0.03 6.44 16 22 C -0.53 -15.10 9.39 -34.44 -0.32 -15.43 16 23 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 24 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 25 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 26 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 27 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 28 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 29 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 30 H 0.08 1.02 5.79 -51.93 -0.30 0.72 16 31 H 0.07 0.88 7.65 -51.93 -0.40 0.48 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.09 0.61 7.93 -51.93 -0.41 0.19 16 34 H 0.09 0.76 8.04 -51.93 -0.42 0.35 16 35 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 36 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 37 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 38 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 40 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.11 0.73 8.08 -51.93 -0.42 0.31 16 44 H 0.05 0.66 7.19 -51.93 -0.37 0.29 16 45 H 0.08 1.29 8.07 -51.93 -0.42 0.87 16 46 H 0.06 0.81 6.11 -51.93 -0.32 0.49 16 47 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 48 H 0.05 1.34 7.42 -51.93 -0.39 0.95 16 49 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 411.57 15.07 6.20 6.20 Total: -1.00 -35.67 411.57 -9.96 -45.63 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -7.51 Total: 1.20 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -2.88 Total: -2.13 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: 0.21 Total: -39.20 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: -0.96 Total: -28.68 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -35.67 -9.96 -45.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752608356.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.964 kcal (2) G-P(sol) polarization free energy of solvation -35.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds