Wall clock time and date at job start Wed Apr 1 2020 04:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47193 * 2 1 4 4 C 1.46502 * 119.99782 * 270.00129 * 3 2 1 5 5 C 1.50706 * 109.47139 * 269.99923 * 4 3 2 6 6 H 1.08003 * 119.99425 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00170 * 180.02562 * 5 4 3 8 8 N 1.31506 * 120.00129 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99943 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47558 * 90.00100 * 9 7 5 11 11 H 1.48503 * 109.47150 * 210.00244 * 9 7 5 12 12 H 1.48501 * 109.47090 * 329.99863 * 9 7 5 13 13 C 1.34776 * 120.00394 * 89.99783 * 3 2 1 14 14 O 1.21279 * 120.00070 * 179.97438 * 13 3 2 15 15 C 1.50707 * 119.99614 * 0.02562 * 13 3 2 16 16 O 1.45199 * 109.46870 * 185.00584 * 15 13 3 17 17 C 1.34222 * 117.00069 * 184.97280 * 16 15 13 18 18 O 1.20826 * 120.00100 * 354.92948 * 17 16 15 19 19 C 1.50699 * 120.00115 * 174.92189 * 17 16 15 20 20 C 1.52998 * 115.54942 * 65.27402 * 19 17 16 21 21 C 1.50701 * 109.47135 * 39.92593 * 20 19 17 22 22 C 1.38235 * 119.99514 * 84.72297 * 21 20 19 23 23 C 1.38238 * 119.99649 * 180.02562 * 22 21 20 24 24 C 1.38234 * 120.00183 * 359.95721 * 23 22 21 25 25 C 1.38243 * 119.99761 * 359.97438 * 24 23 22 26 26 C 1.38231 * 120.00011 * 0.09516 * 25 24 23 27 27 C 1.53009 * 117.51906 * 210.97290 * 19 17 16 28 28 C 1.52999 * 117.50060 * 279.60141 * 19 17 16 29 29 H 1.08999 * 109.47344 * 300.00038 * 1 2 3 30 30 H 1.08995 * 109.47369 * 60.00171 * 1 2 3 31 31 H 1.09001 * 109.47133 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46909 * 239.99662 * 2 1 3 33 33 H 1.08995 * 109.46964 * 120.00184 * 2 1 3 34 34 H 1.09007 * 109.47398 * 29.99786 * 4 3 2 35 35 H 1.08997 * 109.47179 * 150.00164 * 4 3 2 36 36 H 0.97002 * 120.00459 * 180.02562 * 8 7 5 37 37 H 1.09003 * 109.46831 * 65.00695 * 15 13 3 38 38 H 1.08993 * 109.46868 * 305.00553 * 15 13 3 39 39 H 1.09004 * 109.47022 * 279.92906 * 20 19 17 40 40 H 1.09003 * 109.47193 * 159.92934 * 20 19 17 41 41 H 1.07999 * 120.00367 * 0.02562 * 22 21 20 42 42 H 1.08005 * 119.99964 * 179.97438 * 23 22 21 43 43 H 1.07999 * 120.00116 * 179.72101 * 24 23 22 44 44 H 1.07994 * 119.99709 * 179.97438 * 25 24 23 45 45 H 1.07994 * 120.00012 * 179.97438 * 26 25 24 46 46 H 1.08998 * 117.49711 * 214.96927 * 27 19 17 47 47 H 1.09001 * 117.49511 * 359.97438 * 27 19 17 48 48 H 1.09001 * 117.49821 * 359.97438 * 28 19 17 49 49 H 1.08998 * 117.50092 * 144.97358 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8349 -1.7039 6 1 4.3426 1.2301 -1.0962 7 6 4.1494 2.3903 -2.8775 8 7 5.3913 2.1833 -3.2574 9 14 3.0135 3.4370 -3.9281 10 1 3.1173 4.8569 -3.5060 11 1 3.4065 3.3148 -5.3549 12 1 1.6136 2.9713 -3.7586 13 6 2.2430 2.0166 1.1671 14 8 2.6477 3.1599 1.1671 15 6 1.9923 1.3060 2.4723 16 8 2.1925 2.2312 3.5733 17 6 2.1083 1.7283 4.8149 18 8 1.7850 0.5757 4.9792 19 6 2.4170 2.6011 6.0040 20 6 1.4587 3.7722 6.2295 21 6 0.0462 3.3259 5.9525 22 6 -0.6876 2.7001 6.9429 23 6 -1.9831 2.2902 6.6887 24 6 -2.5451 2.5070 5.4445 25 6 -1.8117 3.1341 4.4546 26 6 -0.5158 3.5427 4.7083 27 6 3.0103 1.9253 7.2419 28 6 3.8896 2.8145 6.3603 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.5817 1.6876 -2.0285 35 1 2.0956 3.1410 -1.1385 36 1 5.7176 2.5743 -4.0830 37 1 2.6849 0.4700 2.5696 38 1 0.9681 0.9336 2.4923 39 1 1.7197 4.5898 5.5575 40 1 1.5366 4.1117 7.2623 41 1 -0.2488 2.5314 7.9152 42 1 -2.5563 1.8009 7.4623 43 1 -3.5557 2.1827 5.2445 44 1 -2.2506 3.3031 3.4824 45 1 0.0573 4.0322 3.9348 46 1 2.7179 2.3151 8.2169 47 1 3.1770 0.8490 7.1965 48 1 4.6350 2.3233 5.7349 49 1 4.1757 3.7894 6.7550 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000752609002.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:21 Heat of formation + Delta-G solvation = -65.900008 kcal Electronic energy + Delta-G solvation = -30787.214037 eV Core-core repulsion = 26680.528345 eV Total energy + Delta-G solvation = -4106.685691 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.92188 -39.47072 -38.99741 -37.52332 -36.17563 -35.41000 -32.77924 -32.59743 -31.00303 -30.48279 -29.42440 -27.59922 -27.01021 -24.28592 -23.05778 -22.89273 -22.55028 -22.20974 -21.64884 -19.85655 -18.63440 -17.61882 -17.04999 -16.93556 -16.64559 -16.53460 -16.09637 -15.47638 -15.30479 -15.15754 -15.03636 -14.44588 -14.10449 -13.79991 -13.56760 -13.54839 -13.27992 -13.19154 -12.85794 -12.73393 -12.65500 -12.43478 -12.23458 -12.14737 -11.87520 -11.83531 -11.48793 -11.46408 -11.16911 -11.03406 -10.88765 -10.86402 -10.59631 -10.54282 -10.46891 -10.22642 -10.18950 -9.57874 -9.11522 -9.03148 -8.86438 -8.61621 -7.83339 -6.11265 -4.10664 1.18763 1.28858 2.13003 2.37173 3.15914 3.27389 3.33122 3.35042 3.36388 3.62766 3.74225 4.23928 4.37103 4.43948 4.55598 4.62580 4.75357 4.79052 4.88187 4.91153 5.02850 5.10858 5.17601 5.22084 5.25172 5.28724 5.33055 5.37061 5.39502 5.48859 5.56516 5.60350 5.63622 5.64771 5.79663 5.89802 5.92721 5.94345 6.08901 6.32636 6.34112 6.37683 6.40653 6.48430 6.64621 6.88093 6.88213 7.23656 7.56586 7.73284 8.10251 8.42601 8.80913 8.92267 9.48315 11.02064 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013242 B = 0.002984 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.923610 B = 9381.892418 C =10203.054803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.588 5.588 4 C 0.219 3.781 5 C -0.531 4.531 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.896 5.896 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.511 3.489 14 O -0.517 6.517 15 C 0.050 3.950 16 O -0.321 6.321 17 C 0.502 3.498 18 O -0.505 6.505 19 C -0.128 4.128 20 C -0.037 4.037 21 C -0.093 4.093 22 C -0.107 4.107 23 C -0.123 4.123 24 C -0.121 4.121 25 C -0.119 4.119 26 C -0.108 4.108 27 C -0.143 4.143 28 C -0.150 4.150 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.033 0.967 35 H 0.038 0.962 36 H 0.265 0.735 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.128 0.872 46 H 0.109 0.891 47 H 0.105 0.895 48 H 0.104 0.896 49 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.932 -1.141 21.551 25.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.321 5.321 4 C 0.099 3.901 5 C -0.570 4.570 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.535 5.535 9 Si 0.703 3.297 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.190 1.190 13 C 0.295 3.705 14 O -0.392 6.392 15 C -0.027 4.027 16 O -0.236 6.236 17 C 0.345 3.655 18 O -0.392 6.392 19 C -0.129 4.129 20 C -0.074 4.074 21 C -0.093 4.093 22 C -0.125 4.125 23 C -0.141 4.141 24 C -0.139 4.139 25 C -0.137 4.137 26 C -0.126 4.126 27 C -0.180 4.180 28 C -0.187 4.187 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.108 0.892 33 H 0.085 0.915 34 H 0.051 0.949 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.113 0.887 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.106 0.894 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.138 0.862 44 H 0.140 0.860 45 H 0.146 0.854 46 H 0.127 0.873 47 H 0.124 0.876 48 H 0.123 0.877 49 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -12.688 -0.827 21.385 24.879 hybrid contribution -0.548 0.147 -0.846 1.019 sum -13.236 -0.680 20.539 24.443 Atomic orbital electron populations 1.22244 0.96492 1.01882 1.02309 1.21531 0.93662 0.83603 1.03442 1.47864 1.64242 1.13530 1.06466 1.19694 0.97499 0.93414 0.79535 1.21319 0.95283 1.33103 1.07271 0.90710 1.24846 0.95009 0.95761 0.97312 1.69891 1.15133 1.44853 1.23579 0.86855 0.81429 0.81648 0.79788 1.19836 1.21027 1.19045 1.19704 0.79373 0.87118 0.84261 1.90713 1.44212 1.17552 1.86735 1.22921 1.03399 0.91938 0.84486 1.86546 1.81648 1.41323 1.14091 1.22370 0.73212 0.86278 0.83667 1.90644 1.43235 1.18875 1.86469 1.20897 0.98325 1.00114 0.93604 1.20121 0.89167 0.94859 1.03227 1.19803 0.95574 0.99620 0.94300 1.20990 0.94354 0.98241 0.98919 1.21107 0.95511 1.00310 0.97150 1.21165 0.99914 0.99223 0.93623 1.21187 0.94608 0.98639 0.99292 1.21260 0.95409 0.99497 0.96480 1.23208 1.01077 1.00192 0.93526 1.23187 0.90785 1.02490 1.02246 0.93034 0.91953 0.91696 0.89165 0.91478 0.94912 0.94423 0.92504 0.88675 0.88859 0.89132 0.89421 0.86195 0.86212 0.86245 0.86008 0.85399 0.87260 0.87640 0.87732 0.86979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 10.19 37.16 0.38 -1.78 16 2 C 0.10 1.57 5.86 -4.04 -0.02 1.55 16 3 N -0.59 -11.95 2.46 -175.05 -0.43 -12.38 16 4 C 0.22 5.27 4.23 -5.19 -0.02 5.24 16 5 C -0.53 -15.13 9.94 -34.44 -0.34 -15.48 16 6 H 0.07 2.34 8.06 -52.48 -0.42 1.91 16 7 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 8 N -0.90 -27.50 13.96 55.43 0.77 -26.73 16 9 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 10 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 13 C 0.51 10.58 7.75 -10.98 -0.09 10.49 16 14 O -0.52 -12.88 16.09 -14.05 -0.23 -13.10 16 15 C 0.05 0.82 4.45 36.01 0.16 0.99 16 16 O -0.32 -5.40 9.74 -45.87 -0.45 -5.84 16 17 C 0.50 7.44 5.76 36.00 0.21 7.65 16 18 O -0.50 -8.32 16.43 -18.75 -0.31 -8.63 16 19 C -0.13 -1.42 2.30 -155.66 -0.36 -1.78 16 20 C -0.04 -0.35 5.48 -27.88 -0.15 -0.51 16 21 C -0.09 -1.04 4.29 -104.62 -0.45 -1.49 16 22 C -0.11 -1.09 9.72 -39.58 -0.38 -1.47 16 23 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 24 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 25 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 26 C -0.11 -1.34 9.19 -39.59 -0.36 -1.70 16 27 C -0.14 -1.23 9.70 -26.73 -0.26 -1.49 16 28 C -0.15 -1.36 9.95 -26.73 -0.27 -1.62 16 29 H 0.05 0.63 7.13 -51.93 -0.37 0.26 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.09 1.44 8.07 -51.93 -0.42 1.02 16 33 H 0.07 0.90 6.58 -51.93 -0.34 0.56 16 34 H 0.03 0.75 7.13 -51.92 -0.37 0.38 16 35 H 0.04 0.97 6.85 -51.93 -0.36 0.61 16 36 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 37 H 0.10 1.47 7.61 -51.93 -0.40 1.08 16 38 H 0.09 1.36 6.91 -51.93 -0.36 1.00 16 39 H 0.09 0.89 8.05 -51.93 -0.42 0.47 16 40 H 0.09 0.61 7.93 -51.93 -0.41 0.20 16 41 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 43 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 44 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 45 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 46 H 0.11 0.66 8.08 -51.93 -0.42 0.24 16 47 H 0.11 1.00 7.99 -51.93 -0.42 0.58 16 48 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 49 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 412.88 15.07 6.22 6.22 Total: -1.00 -35.76 412.88 -10.01 -45.77 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -7.67 Total: 2.35 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -3.25 Total: -4.35 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.34 Total: -39.11 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: -0.98 Total: -27.58 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -35.76 -10.01 -45.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752609002.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.134 kcal (2) G-P(sol) polarization free energy of solvation -35.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds