Wall clock time and date at job start Wed Apr 1 2020 04:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47193 * 2 1 4 4 C 1.46502 * 119.99782 * 270.00129 * 3 2 1 5 5 C 1.50706 * 109.47139 * 269.99923 * 4 3 2 6 6 H 1.08003 * 119.99425 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00170 * 180.02562 * 5 4 3 8 8 N 1.31506 * 120.00129 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99943 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47558 * 90.00100 * 9 7 5 11 11 H 1.48503 * 109.47150 * 210.00244 * 9 7 5 12 12 H 1.48501 * 109.47090 * 329.99863 * 9 7 5 13 13 C 1.34776 * 120.00394 * 89.99783 * 3 2 1 14 14 O 1.21279 * 120.00070 * 179.97438 * 13 3 2 15 15 C 1.50707 * 119.99614 * 0.02562 * 13 3 2 16 16 O 1.45199 * 109.46870 * 185.00584 * 15 13 3 17 17 C 1.34222 * 117.00069 * 184.97280 * 16 15 13 18 18 O 1.20826 * 120.00100 * 354.92948 * 17 16 15 19 19 C 1.50699 * 120.00115 * 174.92189 * 17 16 15 20 20 C 1.52998 * 115.54942 * 65.27402 * 19 17 16 21 21 C 1.50701 * 109.47135 * 39.92593 * 20 19 17 22 22 C 1.38235 * 119.99514 * 84.72297 * 21 20 19 23 23 C 1.38238 * 119.99649 * 180.02562 * 22 21 20 24 24 C 1.38234 * 120.00183 * 359.95721 * 23 22 21 25 25 C 1.38243 * 119.99761 * 359.97438 * 24 23 22 26 26 C 1.38231 * 120.00011 * 0.09516 * 25 24 23 27 27 C 1.53009 * 117.51906 * 210.97290 * 19 17 16 28 28 C 1.52999 * 117.50060 * 279.60141 * 19 17 16 29 29 H 1.08999 * 109.47344 * 300.00038 * 1 2 3 30 30 H 1.08995 * 109.47369 * 60.00171 * 1 2 3 31 31 H 1.09001 * 109.47133 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46909 * 239.99662 * 2 1 3 33 33 H 1.08995 * 109.46964 * 120.00184 * 2 1 3 34 34 H 1.09007 * 109.47398 * 29.99786 * 4 3 2 35 35 H 1.08997 * 109.47179 * 150.00164 * 4 3 2 36 36 H 0.97002 * 120.00459 * 180.02562 * 8 7 5 37 37 H 1.09003 * 109.46831 * 65.00695 * 15 13 3 38 38 H 1.08993 * 109.46868 * 305.00553 * 15 13 3 39 39 H 1.09004 * 109.47022 * 279.92906 * 20 19 17 40 40 H 1.09003 * 109.47193 * 159.92934 * 20 19 17 41 41 H 1.07999 * 120.00367 * 0.02562 * 22 21 20 42 42 H 1.08005 * 119.99964 * 179.97438 * 23 22 21 43 43 H 1.07999 * 120.00116 * 179.72101 * 24 23 22 44 44 H 1.07994 * 119.99709 * 179.97438 * 25 24 23 45 45 H 1.07994 * 120.00012 * 179.97438 * 26 25 24 46 46 H 1.08998 * 117.49711 * 214.96927 * 27 19 17 47 47 H 1.09001 * 117.49511 * 359.97438 * 27 19 17 48 48 H 1.09001 * 117.49821 * 359.97438 * 28 19 17 49 49 H 1.08998 * 117.50092 * 144.97358 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8349 -1.7039 6 1 4.3426 1.2301 -1.0962 7 6 4.1494 2.3903 -2.8775 8 7 5.3913 2.1833 -3.2574 9 14 3.0135 3.4370 -3.9281 10 1 3.1173 4.8569 -3.5060 11 1 3.4065 3.3148 -5.3549 12 1 1.6136 2.9713 -3.7586 13 6 2.2430 2.0166 1.1671 14 8 2.6477 3.1599 1.1671 15 6 1.9923 1.3060 2.4723 16 8 2.1925 2.2312 3.5733 17 6 2.1083 1.7283 4.8149 18 8 1.7850 0.5757 4.9792 19 6 2.4170 2.6011 6.0040 20 6 1.4587 3.7722 6.2295 21 6 0.0462 3.3259 5.9525 22 6 -0.6876 2.7001 6.9429 23 6 -1.9831 2.2902 6.6887 24 6 -2.5451 2.5070 5.4445 25 6 -1.8117 3.1341 4.4546 26 6 -0.5158 3.5427 4.7083 27 6 3.0103 1.9253 7.2419 28 6 3.8896 2.8145 6.3603 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.5817 1.6876 -2.0285 35 1 2.0956 3.1410 -1.1385 36 1 5.7176 2.5743 -4.0830 37 1 2.6849 0.4700 2.5696 38 1 0.9681 0.9336 2.4923 39 1 1.7197 4.5898 5.5575 40 1 1.5366 4.1117 7.2623 41 1 -0.2488 2.5314 7.9152 42 1 -2.5563 1.8009 7.4623 43 1 -3.5557 2.1827 5.2445 44 1 -2.2506 3.3031 3.4824 45 1 0.0573 4.0322 3.9348 46 1 2.7179 2.3151 8.2169 47 1 3.1770 0.8490 7.1965 48 1 4.6350 2.3233 5.7349 49 1 4.1757 3.7894 6.7550 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000752609002.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:19 Heat of formation + Delta-G solvation = -85.055969 kcal Electronic energy + Delta-G solvation = -30788.044701 eV Core-core repulsion = 26680.528345 eV Total energy + Delta-G solvation = -4107.516356 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.05186 -40.82910 -40.05155 -38.45936 -37.40485 -37.02458 -34.90676 -33.34107 -32.10725 -31.77832 -30.86865 -28.98467 -28.14256 -25.46505 -24.48413 -23.92656 -23.61838 -23.27503 -22.46735 -20.93513 -20.21651 -19.14991 -18.70060 -18.15031 -17.89417 -17.75235 -17.30020 -16.92438 -16.43985 -16.10339 -16.06471 -15.83338 -15.38889 -15.14657 -14.83304 -14.57710 -14.38422 -14.30847 -14.14930 -14.02805 -13.76111 -13.70562 -13.43874 -13.39437 -13.22428 -13.13887 -12.61116 -12.50097 -12.45965 -12.21902 -12.15492 -12.04600 -11.93492 -11.84936 -11.77168 -11.75923 -11.37112 -11.03849 -10.85360 -10.82049 -9.82998 -9.64224 -9.56785 -8.35832 -6.41744 0.40766 0.48738 1.00620 1.18245 1.32673 1.36432 1.44569 1.52130 2.27687 2.29827 2.63000 2.84525 2.98319 3.33793 3.45539 3.54324 3.77358 3.83245 3.85498 3.89435 4.01269 4.06478 4.13234 4.16742 4.30408 4.31203 4.51655 4.52765 4.62214 4.68642 4.69746 4.72696 4.81977 4.83570 4.88653 4.90911 4.93013 4.94411 5.14401 5.14858 5.17616 5.24781 5.30831 5.42197 5.52829 5.56359 5.61649 5.69581 6.12028 6.19132 6.45343 6.59532 6.59666 7.11687 7.25728 8.81141 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013242 B = 0.002984 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.923610 B = 9381.892418 C =10203.054803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.093 3.907 3 N -0.592 5.592 4 C 0.228 3.772 5 C -0.540 4.540 6 H 0.029 0.971 7 C 0.013 3.987 8 N -0.944 5.944 9 Si 0.947 3.053 10 H -0.276 1.276 11 H -0.274 1.274 12 H -0.236 1.236 13 C 0.504 3.496 14 O -0.570 6.570 15 C 0.061 3.939 16 O -0.340 6.340 17 C 0.500 3.500 18 O -0.526 6.526 19 C -0.151 4.151 20 C -0.032 4.032 21 C -0.103 4.103 22 C -0.113 4.113 23 C -0.126 4.126 24 C -0.128 4.128 25 C -0.135 4.135 26 C -0.133 4.133 27 C -0.123 4.123 28 C -0.148 4.148 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.056 0.944 35 H 0.021 0.979 36 H 0.269 0.731 37 H 0.106 0.894 38 H 0.117 0.883 39 H 0.079 0.921 40 H 0.122 0.878 41 H 0.145 0.855 42 H 0.146 0.854 43 H 0.140 0.860 44 H 0.125 0.875 45 H 0.106 0.894 46 H 0.144 0.856 47 H 0.095 0.905 48 H 0.089 0.911 49 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.357 -1.639 23.597 28.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.029 4.029 3 N -0.324 5.324 4 C 0.106 3.894 5 C -0.578 4.578 6 H 0.047 0.953 7 C -0.185 4.185 8 N -0.584 5.584 9 Si 0.769 3.231 10 H -0.201 1.201 11 H -0.199 1.199 12 H -0.159 1.159 13 C 0.291 3.709 14 O -0.449 6.449 15 C -0.016 4.016 16 O -0.255 6.255 17 C 0.344 3.656 18 O -0.414 6.414 19 C -0.152 4.152 20 C -0.069 4.069 21 C -0.103 4.103 22 C -0.130 4.130 23 C -0.144 4.144 24 C -0.146 4.146 25 C -0.153 4.153 26 C -0.151 4.151 27 C -0.159 4.159 28 C -0.185 4.185 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.115 0.885 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.074 0.926 35 H 0.039 0.961 36 H 0.078 0.922 37 H 0.124 0.876 38 H 0.134 0.866 39 H 0.097 0.903 40 H 0.140 0.860 41 H 0.163 0.837 42 H 0.164 0.836 43 H 0.158 0.842 44 H 0.143 0.857 45 H 0.124 0.876 46 H 0.162 0.838 47 H 0.113 0.887 48 H 0.107 0.893 49 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -15.141 -1.380 23.447 27.945 hybrid contribution 0.282 0.217 -1.418 1.462 sum -14.858 -1.163 22.029 26.597 Atomic orbital electron populations 1.22172 0.93681 1.03930 1.02191 1.21873 0.95907 0.80865 1.04285 1.47953 1.63863 1.15265 1.05293 1.19379 0.95117 0.93124 0.81796 1.21542 0.97003 1.32383 1.06907 0.95283 1.25838 0.96727 0.97103 0.98877 1.70042 1.17439 1.46416 1.24517 0.85730 0.80522 0.79019 0.77796 1.20139 1.19926 1.15916 1.20415 0.78116 0.86669 0.85667 1.90673 1.46633 1.19954 1.87656 1.22751 1.04894 0.91284 0.82635 1.86571 1.82019 1.41930 1.15020 1.23188 0.72193 0.86621 0.83582 1.90614 1.44366 1.19902 1.86556 1.21090 0.99985 1.00973 0.93117 1.20166 0.87940 0.93847 1.04935 1.20019 0.96431 0.99770 0.94056 1.21331 0.94520 0.97538 0.99639 1.21504 0.95691 0.99677 0.97546 1.21457 1.00800 0.98757 0.93568 1.21353 0.94584 0.99264 1.00107 1.21251 0.96057 1.00904 0.96931 1.23364 0.99001 0.99621 0.93922 1.23320 0.89246 1.03921 1.02001 0.92648 0.92586 0.88501 0.89754 0.89324 0.92613 0.96075 0.92180 0.87582 0.86560 0.90271 0.85999 0.83690 0.83629 0.84188 0.85706 0.87611 0.83759 0.88692 0.89259 0.84441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.71 10.19 71.98 0.73 -2.97 16 2 C 0.09 2.77 5.86 86.38 0.51 3.28 16 3 N -0.59 -24.35 2.46 -826.14 -2.03 -26.38 16 4 C 0.23 11.08 4.23 85.63 0.36 11.44 16 5 C -0.54 -31.88 9.94 25.60 0.25 -31.62 16 6 H 0.03 1.92 8.06 -2.91 -0.02 1.89 16 7 C 0.01 0.76 5.47 84.65 0.46 1.22 16 8 N -0.94 -59.84 13.96 21.44 0.30 -59.54 16 9 Si 0.95 44.27 27.47 68.60 1.88 46.16 16 10 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 11 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 12 H -0.24 -9.83 6.54 99.48 0.65 -9.18 16 13 C 0.50 21.53 7.75 87.66 0.68 22.21 16 14 O -0.57 -29.83 16.09 15.72 0.25 -29.58 16 15 C 0.06 2.04 4.45 71.24 0.32 2.36 16 16 O -0.34 -11.72 9.74 -45.00 -0.44 -12.16 16 17 C 0.50 14.73 5.76 71.24 0.41 15.14 16 18 O -0.53 -17.01 16.43 21.96 0.36 -16.65 16 19 C -0.15 -3.13 2.30 -52.93 -0.12 -3.25 16 20 C -0.03 -0.57 5.48 29.85 0.16 -0.41 16 21 C -0.10 -2.19 4.29 -19.87 -0.09 -2.28 16 22 C -0.11 -2.01 9.72 22.27 0.22 -1.79 16 23 C -0.13 -2.16 10.05 22.27 0.22 -1.93 16 24 C -0.13 -2.40 10.05 22.27 0.22 -2.17 16 25 C -0.14 -3.05 10.05 22.27 0.22 -2.82 16 26 C -0.13 -3.36 9.19 22.27 0.20 -3.15 16 27 C -0.12 -1.76 9.70 30.60 0.30 -1.47 16 28 C -0.15 -2.44 9.95 30.59 0.30 -2.13 16 29 H 0.05 1.24 7.13 -2.39 -0.02 1.22 16 30 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.08 2.63 8.07 -2.39 -0.02 2.61 16 33 H 0.09 2.26 6.58 -2.39 -0.02 2.24 16 34 H 0.06 2.46 7.13 -2.38 -0.02 2.45 16 35 H 0.02 1.10 6.85 -2.39 -0.02 1.09 16 36 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 37 H 0.11 3.28 7.61 -2.39 -0.02 3.26 16 38 H 0.12 3.30 6.91 -2.39 -0.02 3.29 16 39 H 0.08 1.55 8.05 -2.39 -0.02 1.54 16 40 H 0.12 1.28 7.93 -2.39 -0.02 1.26 16 41 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 42 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 43 H 0.14 1.93 8.06 -2.91 -0.02 1.90 16 44 H 0.12 2.56 8.06 -2.91 -0.02 2.53 16 45 H 0.11 3.02 8.06 -2.91 -0.02 3.00 16 46 H 0.14 1.06 8.08 -2.39 -0.02 1.04 16 47 H 0.09 1.60 7.99 -2.39 -0.02 1.58 16 48 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 49 H 0.14 1.53 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -82.58 412.88 6.58 -76.00 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: 0.88 Total: 22.50 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: 5.38 Total: -0.35 kcal Atomic # 7 Polarization: -84.19 SS G_CDS: -1.73 Total: -85.92 kcal Atomic # 8 Polarization: -58.56 SS G_CDS: 0.18 Total: -58.39 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.88 Total: 46.16 kcal Total: -82.58 6.58 -76.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752609002.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.056 kcal (2) G-P(sol) polarization free energy of solvation -82.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds