Wall clock time and date at job start Wed Apr 1 2020 04:03:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 N 1.46505 * 109.46910 * 2 1
4 4 C 1.46491 * 120.00206 * 270.00116 * 3 2 1
5 5 C 1.50700 * 109.47453 * 270.00110 * 4 3 2
6 6 H 1.08004 * 119.99697 * 359.97438 * 5 4 3
7 7 C 1.37878 * 120.00377 * 180.02562 * 5 4 3
8 8 N 1.31515 * 119.99772 * 0.02562 * 7 5 4
9 9 Si 1.86800 * 120.00088 * 179.97438 * 7 5 4
10 10 H 1.48506 * 109.47064 * 90.00006 * 9 7 5
11 11 H 1.48498 * 109.47091 * 209.99968 * 9 7 5
12 12 H 1.48497 * 109.47186 * 330.00333 * 9 7 5
13 13 C 1.34778 * 119.99436 * 90.00260 * 3 2 1
14 14 O 1.21286 * 119.99704 * 180.02562 * 13 3 2
15 15 C 1.50694 * 120.00578 * 359.97438 * 13 3 2
16 16 O 1.45201 * 109.47550 * 180.02562 * 15 13 3
17 17 C 1.34226 * 117.00006 * 180.02562 * 16 15 13
18 18 O 1.20827 * 120.00214 * 359.97438 * 17 16 15
19 19 C 1.50695 * 119.99890 * 179.97438 * 17 16 15
20 20 H 1.09005 * 109.47320 * 59.99560 * 19 17 16
21 21 C 1.50702 * 109.47523 * 179.97438 * 19 17 16
22 22 C 1.38234 * 120.00257 * 240.00550 * 21 19 17
23 23 C 1.38238 * 119.99675 * 180.25732 * 22 21 19
24 24 C 1.38228 * 120.00110 * 359.52133 * 23 22 21
25 25 C 1.38234 * 120.00090 * 0.43562 * 24 23 22
26 26 C 1.38235 * 119.99522 * 59.97562 * 21 19 17
27 27 C 1.53003 * 109.47597 * 299.99956 * 19 17 16
28 28 C 1.52994 * 117.50091 * 128.61707 * 27 19 17
29 29 C 1.53002 * 60.00264 * 252.51650 * 28 27 19
30 30 H 1.09001 * 109.47576 * 59.99699 * 1 2 3
31 31 H 1.09001 * 109.46890 * 179.97438 * 1 2 3
32 32 H 1.08999 * 109.46895 * 299.99659 * 1 2 3
33 33 H 1.08999 * 109.46895 * 240.00341 * 2 1 3
34 34 H 1.08994 * 109.47426 * 119.99941 * 2 1 3
35 35 H 1.08998 * 109.47556 * 29.99809 * 4 3 2
36 36 H 1.09005 * 109.47141 * 149.99843 * 4 3 2
37 37 H 0.96998 * 119.99648 * 179.97438 * 8 7 5
38 38 H 1.09009 * 109.47017 * 60.00185 * 15 13 3
39 39 H 1.09001 * 109.47173 * 300.00330 * 15 13 3
40 40 H 1.08002 * 119.99744 * 359.97115 * 22 21 19
41 41 H 1.08004 * 119.99577 * 179.72816 * 23 22 21
42 42 H 1.07998 * 119.99898 * 180.21654 * 24 23 22
43 43 H 1.08001 * 120.00324 * 179.78918 * 25 24 23
44 44 H 1.07996 * 120.00471 * 0.02562 * 26 21 19
45 45 H 1.08995 * 115.54831 * 274.33761 * 27 19 17
46 46 H 1.09001 * 117.50207 * 0.02562 * 28 27 19
47 47 H 1.09002 * 117.49706 * 145.02571 * 28 27 19
48 48 H 1.09001 * 117.49908 * 252.51355 * 29 28 27
49 49 H 1.08999 * 117.49882 * 107.49206 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3813 0.0000
4 6 2.2624 2.0719 -1.2686
5 6 3.6857 1.8352 -1.7038
6 1 4.3428 1.2310 -1.0958
7 6 4.1493 2.3907 -2.8774
8 7 3.3495 3.1277 -3.6170
9 14 5.9137 2.0979 -3.4164
10 1 5.9775 0.8772 -4.2597
11 1 6.3926 3.2656 -4.1988
12 1 6.7736 1.9178 -2.2191
13 6 2.2429 2.0165 1.1673
14 8 2.6467 3.1602 1.1673
15 6 1.9913 1.3063 2.4723
16 8 2.3053 2.1960 3.5760
17 6 2.1343 1.7122 4.8163
18 8 1.7350 0.5828 4.9746
19 6 2.4404 2.5776 6.0115
20 1 1.8110 3.4672 5.9867
21 6 2.1663 1.8039 7.2754
22 6 1.2306 2.2683 8.1808
23 6 0.9831 1.5613 9.3427
24 6 1.6640 0.3850 9.5944
25 6 2.5990 -0.0798 8.6885
26 6 2.8501 0.6297 7.5289
27 6 3.9125 2.9933 5.9767
28 6 4.2294 4.4832 6.1206
29 6 4.3918 3.7941 4.7642
30 1 -0.3634 0.5139 -0.8899
31 1 -0.3633 -1.0277 -0.0005
32 1 -0.3633 0.5138 0.8900
33 1 1.8933 -0.5138 -0.8900
34 1 1.8934 -0.5138 0.8899
35 1 1.5817 1.6878 -2.0283
36 1 2.0954 3.1412 -1.1382
37 1 3.6758 3.5188 -4.4425
38 1 2.6212 0.4186 2.5302
39 1 0.9432 1.0125 2.5299
40 1 0.6963 3.1857 7.9826
41 1 0.2552 1.9264 10.0522
42 1 1.4680 -0.1691 10.5004
43 1 3.1335 -0.9971 8.8868
44 1 3.5811 0.2668 6.8216
45 1 4.6117 2.2845 6.4200
46 1 3.3892 5.1672 6.2405
47 1 5.1373 4.7548 6.6590
48 1 5.4066 3.6124 4.4103
49 1 3.6585 4.0248 3.9915
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000766206428.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:03:40
Heat of formation + Delta-G solvation = -69.145464 kcal
Electronic energy + Delta-G solvation = -30226.451379 eV
Core-core repulsion = 26119.624954 eV
Total energy + Delta-G solvation = -4106.826425 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.177 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-40.97926 -39.48782 -38.78445 -37.35650 -36.36665 -35.30333 -32.85824 -32.68197
-31.11151 -30.19919 -29.43752 -27.98978 -26.42453 -23.17584 -23.03691 -22.97208
-22.35015 -22.04202 -21.82958 -20.07779 -18.65418 -17.82312 -17.22043 -16.70126
-16.57389 -16.37646 -15.99292 -15.61972 -15.32869 -15.23215 -14.76630 -14.48845
-14.22099 -13.98285 -13.56811 -13.46973 -13.29475 -13.08053 -12.97439 -12.78752
-12.41265 -12.16636 -12.06951 -11.83038 -11.64028 -11.49431 -11.38688 -11.24540
-11.16228 -10.95495 -10.92459 -10.87033 -10.61525 -10.52777 -10.35231 -10.15999
-10.00553 -9.67480 -9.09704 -9.01535 -8.94782 -8.46200 -7.76378 -6.07208
-4.12015 1.06683 1.22181 2.13475 2.47906 3.24450 3.28805 3.35737
3.40474 3.55856 3.68672 3.92951 4.27328 4.41563 4.43970 4.67642
4.74500 4.79895 4.87270 4.88191 4.90604 4.97388 5.05461 5.19092
5.21142 5.25048 5.27553 5.29914 5.36490 5.46018 5.57636 5.60308
5.72045 5.73997 5.82966 5.89862 5.98660 6.05095 6.17809 6.22810
6.29269 6.31104 6.36570 6.39858 6.43609 6.77675 6.98550 7.38222
7.46003 7.72055 7.88959 8.19009 8.28808 8.83337 8.98221 9.53044
11.00946
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.015511 B = 0.002517 C = 0.002324
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1804.679110 B =11121.932576 C =12043.618044
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C 0.102 3.898
3 N -0.592 5.592
4 C 0.248 3.752
5 C -0.527 4.527
6 H 0.058 0.942
7 C 0.061 3.939
8 N -0.894 5.894
9 Si 0.898 3.102
10 H -0.280 1.280
11 H -0.285 1.285
12 H -0.274 1.274
13 C 0.508 3.492
14 O -0.518 6.518
15 C 0.048 3.952
16 O -0.322 6.322
17 C 0.468 3.532
18 O -0.503 6.503
19 C -0.006 4.006
20 H 0.116 0.884
21 C -0.069 4.069
22 C -0.107 4.107
23 C -0.123 4.123
24 C -0.118 4.118
25 C -0.122 4.122
26 C -0.084 4.084
27 C -0.160 4.160
28 C -0.169 4.169
29 C -0.163 4.163
30 H 0.063 0.937
31 H 0.062 0.938
32 H 0.049 0.951
33 H 0.087 0.913
34 H 0.064 0.936
35 H 0.035 0.965
36 H 0.045 0.955
37 H 0.264 0.736
38 H 0.094 0.906
39 H 0.093 0.907
40 H 0.123 0.877
41 H 0.122 0.878
42 H 0.120 0.880
43 H 0.122 0.878
44 H 0.120 0.880
45 H 0.111 0.889
46 H 0.096 0.904
47 H 0.095 0.905
48 H 0.097 0.903
49 H 0.118 0.882
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.314 -4.562 23.900 24.711
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.229 4.229
2 C -0.022 4.022
3 N -0.326 5.326
4 C 0.130 3.870
5 C -0.566 4.566
6 H 0.076 0.924
7 C -0.141 4.141
8 N -0.533 5.533
9 Si 0.726 3.274
10 H -0.206 1.206
11 H -0.211 1.211
12 H -0.199 1.199
13 C 0.292 3.708
14 O -0.394 6.394
15 C -0.029 4.029
16 O -0.237 6.237
17 C 0.310 3.690
18 O -0.391 6.391
19 C -0.025 4.025
20 H 0.134 0.866
21 C -0.069 4.069
22 C -0.125 4.125
23 C -0.141 4.141
24 C -0.136 4.136
25 C -0.140 4.140
26 C -0.102 4.102
27 C -0.178 4.178
28 C -0.206 4.206
29 C -0.199 4.199
30 H 0.082 0.918
31 H 0.081 0.919
32 H 0.068 0.932
33 H 0.106 0.894
34 H 0.082 0.918
35 H 0.053 0.947
36 H 0.063 0.937
37 H 0.073 0.927
38 H 0.112 0.888
39 H 0.111 0.889
40 H 0.141 0.859
41 H 0.140 0.860
42 H 0.138 0.862
43 H 0.140 0.860
44 H 0.138 0.862
45 H 0.129 0.871
46 H 0.115 0.885
47 H 0.114 0.886
48 H 0.116 0.884
49 H 0.136 0.864
Dipole moment (debyes) X Y Z Total
from point charges -4.222 -4.171 23.704 24.436
hybrid contribution 0.843 -0.514 -0.475 1.096
sum -3.379 -4.685 23.228 23.936
Atomic orbital electron populations
1.22232 0.96548 1.01689 1.02394 1.21503 0.93745 0.83993 1.02993
1.48206 1.63834 1.13382 1.07168 1.19323 0.96456 0.93693 0.77575
1.21417 0.96833 1.32037 1.06334 0.92424 1.24931 0.97899 0.94859
0.96377 1.69930 1.35729 1.33275 1.14360 0.86492 0.84617 0.77684
0.78606 1.20642 1.21061 1.19870 1.19695 0.79678 0.87150 0.84256
1.90708 1.44520 1.17436 1.86745 1.22969 1.02584 0.92777 0.84596
1.86581 1.78289 1.44691 1.14121 1.23504 0.74150 0.86862 0.84504
1.90673 1.42058 1.19753 1.86591 1.19527 0.97831 0.97526 0.87605
0.86613 1.19218 0.97525 0.95791 0.94390 1.21002 0.97192 1.00028
0.94250 1.21073 1.00143 0.95608 0.97309 1.21160 0.96605 0.96450
0.99383 1.21118 0.98567 0.99893 0.94387 1.20945 0.98830 0.93895
0.96537 1.22131 0.93471 0.95814 1.06357 1.23043 1.03351 0.93010
1.01224 1.23224 1.03749 1.01588 0.91380 0.91786 0.91911 0.93156
0.89440 0.91788 0.94689 0.93702 0.92673 0.88805 0.88914 0.85924
0.85981 0.86163 0.86024 0.86241 0.87102 0.88548 0.88630 0.88423
0.86357
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.26 10.24 37.16 0.38 -1.88 16
2 C 0.10 1.60 5.93 -4.04 -0.02 1.58 16
3 N -0.59 -12.28 2.46 -175.07 -0.43 -12.71 16
4 C 0.25 6.35 5.16 -5.20 -0.03 6.32 16
5 C -0.53 -14.72 9.39 -34.44 -0.32 -15.04 16
6 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16
7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16
8 N -0.89 -26.26 13.29 55.43 0.74 -25.53 16
9 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16
10 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16
11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16
12 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16
13 C 0.51 10.54 7.75 -10.99 -0.09 10.45 16
14 O -0.52 -12.94 16.08 -14.11 -0.23 -13.17 16
15 C 0.05 0.78 4.50 36.00 0.16 0.94 16
16 O -0.32 -5.18 7.69 -45.89 -0.35 -5.53 16
17 C 0.47 6.63 7.11 36.00 0.26 6.88 16
18 O -0.50 -7.92 14.86 -18.75 -0.28 -8.20 16
19 C -0.01 -0.07 2.64 -92.92 -0.25 -0.31 16
20 H 0.12 1.12 7.63 -51.93 -0.40 0.73 16
21 C -0.07 -0.75 4.40 -104.62 -0.46 -1.21 16
22 C -0.11 -1.01 9.67 -39.58 -0.38 -1.39 16
23 C -0.12 -1.05 10.05 -39.59 -0.40 -1.45 16
24 C -0.12 -1.01 10.05 -39.59 -0.40 -1.40 16
25 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16
26 C -0.08 -0.92 7.73 -39.58 -0.31 -1.22 16
27 C -0.16 -1.69 5.03 -90.62 -0.46 -2.14 16
28 C -0.17 -1.60 10.18 -26.73 -0.27 -1.87 16
29 C -0.16 -1.97 9.45 -26.73 -0.25 -2.23 16
30 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16
31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
32 H 0.05 0.65 7.22 -51.93 -0.37 0.27 16
33 H 0.09 1.41 8.07 -51.93 -0.42 0.99 16
34 H 0.06 0.85 6.44 -51.93 -0.33 0.52 16
35 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16
36 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16
37 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16
38 H 0.09 1.39 7.39 -51.92 -0.38 1.01 16
39 H 0.09 1.33 7.18 -51.93 -0.37 0.95 16
40 H 0.12 0.92 7.95 -52.49 -0.42 0.50 16
41 H 0.12 0.76 8.06 -52.48 -0.42 0.33 16
42 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16
43 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16
44 H 0.12 1.31 7.80 -52.49 -0.41 0.90 16
45 H 0.11 1.11 7.40 -51.93 -0.38 0.73 16
46 H 0.10 0.83 8.05 -51.93 -0.42 0.41 16
47 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16
48 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16
49 H 0.12 1.74 6.84 -51.93 -0.36 1.39 16
LS Contribution 410.30 15.07 6.18 6.18
Total: -1.00 -33.69 410.30 -10.29 -43.98
By element:
Atomic # 1 Polarization: 9.77 SS G_CDS: -7.57 Total: 2.20 kcal
Atomic # 6 Polarization: -0.55 SS G_CDS: -3.33 Total: -3.88 kcal
Atomic # 7 Polarization: -38.54 SS G_CDS: 0.31 Total: -38.24 kcal
Atomic # 8 Polarization: -26.04 SS G_CDS: -0.86 Total: -26.90 kcal
Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal
Total LS contribution 6.18 Total: 6.18 kcal
Total: -33.69 -10.29 -43.98 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000766206428.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -25.164 kcal
(2) G-P(sol) polarization free energy of solvation -33.692 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.856 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.289 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.981 kcal
(6) G-S(sol) free energy of system = (1) + (5) -69.145 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds