Wall clock time and date at job start Wed Apr 1 2020 04:03:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 N 1.46505 * 109.46910 * 2 1
4 4 C 1.46491 * 120.00206 * 270.00116 * 3 2 1
5 5 C 1.50700 * 109.47453 * 270.00110 * 4 3 2
6 6 H 1.08004 * 119.99697 * 359.97438 * 5 4 3
7 7 C 1.37878 * 120.00377 * 180.02562 * 5 4 3
8 8 N 1.31515 * 119.99772 * 0.02562 * 7 5 4
9 9 Si 1.86800 * 120.00088 * 179.97438 * 7 5 4
10 10 H 1.48506 * 109.47064 * 90.00006 * 9 7 5
11 11 H 1.48498 * 109.47091 * 209.99968 * 9 7 5
12 12 H 1.48497 * 109.47186 * 330.00333 * 9 7 5
13 13 C 1.34778 * 119.99436 * 90.00260 * 3 2 1
14 14 O 1.21286 * 119.99704 * 180.02562 * 13 3 2
15 15 C 1.50694 * 120.00578 * 359.97438 * 13 3 2
16 16 O 1.45201 * 109.47550 * 180.02562 * 15 13 3
17 17 C 1.34226 * 117.00006 * 180.02562 * 16 15 13
18 18 O 1.20827 * 120.00214 * 359.97438 * 17 16 15
19 19 C 1.50695 * 119.99890 * 179.97438 * 17 16 15
20 20 H 1.09005 * 109.47320 * 59.99560 * 19 17 16
21 21 C 1.50702 * 109.47523 * 179.97438 * 19 17 16
22 22 C 1.38234 * 120.00257 * 240.00550 * 21 19 17
23 23 C 1.38238 * 119.99675 * 180.25732 * 22 21 19
24 24 C 1.38228 * 120.00110 * 359.52133 * 23 22 21
25 25 C 1.38234 * 120.00090 * 0.43562 * 24 23 22
26 26 C 1.38235 * 119.99522 * 59.97562 * 21 19 17
27 27 C 1.53003 * 109.47597 * 299.99956 * 19 17 16
28 28 C 1.52994 * 117.50091 * 128.61707 * 27 19 17
29 29 C 1.53002 * 60.00264 * 252.51650 * 28 27 19
30 30 H 1.09001 * 109.47576 * 59.99699 * 1 2 3
31 31 H 1.09001 * 109.46890 * 179.97438 * 1 2 3
32 32 H 1.08999 * 109.46895 * 299.99659 * 1 2 3
33 33 H 1.08999 * 109.46895 * 240.00341 * 2 1 3
34 34 H 1.08994 * 109.47426 * 119.99941 * 2 1 3
35 35 H 1.08998 * 109.47556 * 29.99809 * 4 3 2
36 36 H 1.09005 * 109.47141 * 149.99843 * 4 3 2
37 37 H 0.96998 * 119.99648 * 179.97438 * 8 7 5
38 38 H 1.09009 * 109.47017 * 60.00185 * 15 13 3
39 39 H 1.09001 * 109.47173 * 300.00330 * 15 13 3
40 40 H 1.08002 * 119.99744 * 359.97115 * 22 21 19
41 41 H 1.08004 * 119.99577 * 179.72816 * 23 22 21
42 42 H 1.07998 * 119.99898 * 180.21654 * 24 23 22
43 43 H 1.08001 * 120.00324 * 179.78918 * 25 24 23
44 44 H 1.07996 * 120.00471 * 0.02562 * 26 21 19
45 45 H 1.08995 * 115.54831 * 274.33761 * 27 19 17
46 46 H 1.09001 * 117.50207 * 0.02562 * 28 27 19
47 47 H 1.09002 * 117.49706 * 145.02571 * 28 27 19
48 48 H 1.09001 * 117.49908 * 252.51355 * 29 28 27
49 49 H 1.08999 * 117.49882 * 107.49206 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3813 0.0000
4 6 2.2624 2.0719 -1.2686
5 6 3.6857 1.8352 -1.7038
6 1 4.3428 1.2310 -1.0958
7 6 4.1493 2.3907 -2.8774
8 7 3.3495 3.1277 -3.6170
9 14 5.9137 2.0979 -3.4164
10 1 5.9775 0.8772 -4.2597
11 1 6.3926 3.2656 -4.1988
12 1 6.7736 1.9178 -2.2191
13 6 2.2429 2.0165 1.1673
14 8 2.6467 3.1602 1.1673
15 6 1.9913 1.3063 2.4723
16 8 2.3053 2.1960 3.5760
17 6 2.1343 1.7122 4.8163
18 8 1.7350 0.5828 4.9746
19 6 2.4404 2.5776 6.0115
20 1 1.8110 3.4672 5.9867
21 6 2.1663 1.8039 7.2754
22 6 1.2306 2.2683 8.1808
23 6 0.9831 1.5613 9.3427
24 6 1.6640 0.3850 9.5944
25 6 2.5990 -0.0798 8.6885
26 6 2.8501 0.6297 7.5289
27 6 3.9125 2.9933 5.9767
28 6 4.2294 4.4832 6.1206
29 6 4.3918 3.7941 4.7642
30 1 -0.3634 0.5139 -0.8899
31 1 -0.3633 -1.0277 -0.0005
32 1 -0.3633 0.5138 0.8900
33 1 1.8933 -0.5138 -0.8900
34 1 1.8934 -0.5138 0.8899
35 1 1.5817 1.6878 -2.0283
36 1 2.0954 3.1412 -1.1382
37 1 3.6758 3.5188 -4.4425
38 1 2.6212 0.4186 2.5302
39 1 0.9432 1.0125 2.5299
40 1 0.6963 3.1857 7.9826
41 1 0.2552 1.9264 10.0522
42 1 1.4680 -0.1691 10.5004
43 1 3.1335 -0.9971 8.8868
44 1 3.5811 0.2668 6.8216
45 1 4.6117 2.2845 6.4200
46 1 3.3892 5.1672 6.2405
47 1 5.1373 4.7548 6.6590
48 1 5.4066 3.6124 4.4103
49 1 3.6585 4.0248 3.9915
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000766206428.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:03:39
Heat of formation + Delta-G solvation = -85.448732 kcal
Electronic energy + Delta-G solvation = -30227.158341 eV
Core-core repulsion = 26119.624954 eV
Total energy + Delta-G solvation = -4107.533388 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.177 amu
Computer time = 1.10 seconds
Orbital eigenvalues (eV)
-42.07857 -40.78414 -39.93204 -38.21680 -37.61226 -36.96090 -34.94262 -33.47975
-31.78106 -31.76889 -30.79899 -29.12363 -28.08578 -24.97687 -24.26395 -23.73178
-23.44855 -22.94811 -22.69830 -21.04798 -20.23244 -18.95839 -18.65736 -18.15280
-17.82619 -17.70458 -17.41706 -16.86185 -16.43722 -16.32852 -16.09140 -15.73940
-15.45069 -15.05932 -14.80293 -14.54615 -14.46750 -14.21156 -14.02314 -13.93191
-13.64408 -13.60488 -13.40550 -13.28989 -13.07743 -12.69763 -12.64433 -12.51995
-12.38405 -12.22958 -12.10471 -12.05711 -11.97973 -11.86419 -11.78992 -11.72084
-11.20965 -10.95635 -10.71180 -10.64715 -9.77979 -9.67375 -9.54647 -8.23721
-6.38007 0.34093 0.53762 1.02513 1.30343 1.36468 1.39232 1.49447
1.62531 2.30005 2.42614 2.83902 2.92011 3.06373 3.42788 3.44858
3.53534 3.76190 3.90529 3.93882 3.96653 4.06788 4.12879 4.14646
4.19048 4.23781 4.32196 4.36077 4.46993 4.56645 4.64811 4.76352
4.84421 4.86753 4.92676 5.01359 5.02959 5.05354 5.16860 5.17691
5.19959 5.26759 5.33799 5.34474 5.53662 5.56832 5.64090 5.65199
5.79232 6.03749 6.11759 6.52787 6.65103 6.71158 7.21243 7.36482
8.83689
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.015511 B = 0.002517 C = 0.002324
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1804.679110 B =11121.932576 C =12043.618044
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C 0.094 3.906
3 N -0.596 5.596
4 C 0.264 3.736
5 C -0.543 4.543
6 H 0.053 0.947
7 C 0.009 3.991
8 N -0.927 5.927
9 Si 0.967 3.033
10 H -0.263 1.263
11 H -0.281 1.281
12 H -0.274 1.274
13 C 0.501 3.499
14 O -0.572 6.572
15 C 0.060 3.940
16 O -0.337 6.337
17 C 0.468 3.532
18 O -0.518 6.518
19 C -0.001 4.001
20 H 0.130 0.870
21 C -0.084 4.084
22 C -0.114 4.114
23 C -0.126 4.126
24 C -0.120 4.120
25 C -0.131 4.131
26 C -0.103 4.103
27 C -0.154 4.154
28 C -0.146 4.146
29 C -0.187 4.187
30 H 0.045 0.955
31 H 0.097 0.903
32 H 0.056 0.944
33 H 0.081 0.919
34 H 0.095 0.905
35 H 0.029 0.971
36 H 0.000 1.000
37 H 0.268 0.732
38 H 0.112 0.888
39 H 0.118 0.882
40 H 0.140 0.860
41 H 0.147 0.853
42 H 0.145 0.855
43 H 0.136 0.864
44 H 0.109 0.891
45 H 0.116 0.884
46 H 0.109 0.891
47 H 0.113 0.887
48 H 0.091 0.909
49 H 0.088 0.912
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.440 -6.002 26.384 27.419
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.221 4.221
2 C -0.028 4.028
3 N -0.329 5.329
4 C 0.143 3.857
5 C -0.582 4.582
6 H 0.071 0.929
7 C -0.190 4.190
8 N -0.566 5.566
9 Si 0.791 3.209
10 H -0.188 1.188
11 H -0.206 1.206
12 H -0.198 1.198
13 C 0.288 3.712
14 O -0.452 6.452
15 C -0.017 4.017
16 O -0.253 6.253
17 C 0.312 3.688
18 O -0.407 6.407
19 C -0.019 4.019
20 H 0.148 0.852
21 C -0.084 4.084
22 C -0.132 4.132
23 C -0.144 4.144
24 C -0.138 4.138
25 C -0.149 4.149
26 C -0.122 4.122
27 C -0.172 4.172
28 C -0.182 4.182
29 C -0.224 4.224
30 H 0.064 0.936
31 H 0.115 0.885
32 H 0.075 0.925
33 H 0.100 0.900
34 H 0.113 0.887
35 H 0.047 0.953
36 H 0.018 0.982
37 H 0.076 0.924
38 H 0.130 0.870
39 H 0.136 0.864
40 H 0.158 0.842
41 H 0.165 0.835
42 H 0.163 0.837
43 H 0.154 0.846
44 H 0.127 0.873
45 H 0.134 0.866
46 H 0.127 0.873
47 H 0.131 0.869
48 H 0.110 0.890
49 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges -4.373 -5.662 26.202 27.161
hybrid contribution 0.828 -0.086 -1.195 1.457
sum -3.545 -5.748 25.007 25.903
Atomic orbital electron populations
1.22171 0.94349 1.03746 1.01818 1.21843 0.95541 0.81115 1.04264
1.48199 1.63717 1.15188 1.05749 1.18778 0.95547 0.91669 0.79720
1.21680 0.97778 1.32131 1.06586 0.92866 1.25835 1.02337 0.94433
0.96423 1.70045 1.37758 1.34021 1.14821 0.85428 0.79052 0.78209
0.78203 1.18816 1.20612 1.19835 1.20476 0.78355 0.86683 0.85685
1.90676 1.46892 1.19921 1.87682 1.22798 1.04342 0.92186 0.82351
1.86617 1.78674 1.45122 1.14852 1.24121 0.73363 0.87069 0.84270
1.90653 1.42894 1.20510 1.86612 1.19610 0.98276 0.97563 0.86498
0.85196 1.19251 0.98603 0.96115 0.94465 1.21281 0.96813 1.00828
0.94307 1.21437 1.00247 0.95355 0.97323 1.21515 0.95792 0.96566
0.99903 1.21370 0.99036 1.00401 0.94126 1.21013 0.99324 0.94580
0.97244 1.22138 0.93307 0.96788 1.04951 1.23160 1.04408 0.92286
0.98372 1.23053 1.02682 1.04676 0.92013 0.93602 0.88452 0.92521
0.90007 0.88660 0.95345 0.98157 0.92359 0.86989 0.86449 0.84209
0.83487 0.83735 0.84611 0.87280 0.86629 0.87314 0.86855 0.89049
0.89333
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -4.06 10.24 71.98 0.74 -3.32 16
2 C 0.09 2.88 5.93 86.38 0.51 3.39 16
3 N -0.60 -25.32 2.46 -826.17 -2.03 -27.35 16
4 C 0.26 14.16 5.16 85.63 0.44 14.61 16
5 C -0.54 -31.23 9.39 25.60 0.24 -30.99 16
6 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16
7 C 0.01 0.51 5.46 84.65 0.46 0.97 16
8 N -0.93 -55.87 13.29 21.45 0.28 -55.59 16
9 Si 0.97 44.90 29.54 68.60 2.03 46.92 16
10 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16
11 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16
12 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16
13 C 0.50 21.39 7.75 87.65 0.68 22.07 16
14 O -0.57 -30.21 16.08 15.75 0.25 -29.95 16
15 C 0.06 1.91 4.50 71.23 0.32 2.23 16
16 O -0.34 -10.96 7.69 -45.03 -0.35 -11.30 16
17 C 0.47 13.06 7.11 71.23 0.51 13.56 16
18 O -0.52 -15.81 14.86 21.96 0.33 -15.48 16
19 C 0.00 -0.01 2.64 -12.29 -0.03 -0.05 16
20 H 0.13 2.37 7.63 -2.38 -0.02 2.35 16
21 C -0.08 -1.71 4.40 -19.87 -0.09 -1.79 16
22 C -0.11 -1.90 9.67 22.27 0.22 -1.68 16
23 C -0.13 -1.78 10.05 22.27 0.22 -1.55 16
24 C -0.12 -1.72 10.05 22.27 0.22 -1.50 16
25 C -0.13 -2.26 10.05 22.27 0.22 -2.03 16
26 C -0.10 -2.16 7.73 22.27 0.17 -1.99 16
27 C -0.15 -3.16 5.03 -10.79 -0.05 -3.22 16
28 C -0.15 -2.57 10.18 30.59 0.31 -2.26 16
29 C -0.19 -4.68 9.45 30.60 0.29 -4.39 16
30 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16
31 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16
32 H 0.06 1.34 7.22 -2.39 -0.02 1.33 16
33 H 0.08 2.59 8.07 -2.39 -0.02 2.57 16
34 H 0.10 2.32 6.44 -2.39 -0.02 2.30 16
35 H 0.03 1.54 8.07 -2.39 -0.02 1.52 16
36 H 0.00 0.02 7.42 -2.38 -0.02 0.00 16
37 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16
38 H 0.11 3.16 7.39 -2.38 -0.02 3.14 16
39 H 0.12 3.15 7.18 -2.39 -0.02 3.13 16
40 H 0.14 1.72 7.95 -2.91 -0.02 1.70 16
41 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16
42 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16
43 H 0.14 1.81 8.06 -2.91 -0.02 1.78 16
44 H 0.11 2.39 7.80 -2.91 -0.02 2.37 16
45 H 0.12 2.26 7.40 -2.39 -0.02 2.24 16
46 H 0.11 1.66 8.05 -2.39 -0.02 1.64 16
47 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16
48 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16
49 H 0.09 2.79 6.84 -2.39 -0.02 2.77 16
Total: -1.00 -76.51 410.30 6.84 -69.67
By element:
Atomic # 1 Polarization: 20.07 SS G_CDS: 0.94 Total: 21.01 kcal
Atomic # 6 Polarization: -3.32 SS G_CDS: 5.38 Total: 2.07 kcal
Atomic # 7 Polarization: -81.19 SS G_CDS: -1.74 Total: -82.93 kcal
Atomic # 8 Polarization: -56.97 SS G_CDS: 0.23 Total: -56.74 kcal
Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal
Total: -76.51 6.84 -69.67 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000766206428.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -15.774 kcal
(2) G-P(sol) polarization free energy of solvation -76.514 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.288 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.839 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.675 kcal
(6) G-S(sol) free energy of system = (1) + (5) -85.449 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.11 seconds