Wall clock time and date at job start Wed Apr 1 2020 03:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46794 * 2 1 4 4 N 1.46491 * 109.47621 * 239.99826 * 2 1 3 5 5 C 1.34775 * 120.00198 * 84.99515 * 4 2 1 6 6 O 1.21278 * 120.00141 * 0.02562 * 5 4 2 7 7 C 1.50705 * 120.00082 * 180.02562 * 5 4 2 8 8 C 1.54258 * 110.03221 * 297.90635 * 7 5 4 9 9 C 1.54968 * 104.16130 * 217.13601 * 8 7 5 10 10 C 1.54890 * 102.77587 * 37.89266 * 9 8 7 11 11 C 1.53877 * 110.03115 * 180.68809 * 7 5 4 12 12 C 1.50698 * 109.47466 * 119.99285 * 2 1 3 13 13 O 1.20825 * 120.00100 * 120.00067 * 12 2 1 14 14 O 1.34233 * 120.00334 * 300.01058 * 12 2 1 15 15 C 1.45196 * 117.00261 * 179.97438 * 14 12 2 16 16 C 1.50702 * 109.47289 * 179.97438 * 15 14 12 17 17 C 1.38636 * 119.74593 * 269.72920 * 16 15 14 18 18 C 1.37623 * 120.24521 * 179.71976 * 17 16 15 19 19 C 1.40712 * 119.74377 * 0.57054 * 18 17 16 20 20 C 1.41400 * 120.24363 * 179.68527 * 19 18 17 21 21 H 1.08001 * 120.00225 * 155.30418 * 20 19 18 22 22 C 1.39946 * 119.99839 * 335.30245 * 20 19 18 23 23 N 1.30831 * 120.00014 * 342.23943 * 22 20 19 24 24 Si 1.86794 * 120.00069 * 162.23213 * 22 20 19 25 25 H 1.48508 * 109.46924 * 94.66506 * 24 22 20 26 26 H 1.48501 * 109.47416 * 214.66563 * 24 22 20 27 27 H 1.48502 * 109.47160 * 334.66844 * 24 22 20 28 28 C 1.40718 * 119.51400 * 359.69745 * 19 18 17 29 29 C 1.37614 * 119.74148 * 0.02562 * 28 19 18 30 30 H 1.09000 * 109.46272 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47211 * 300.00116 * 1 2 3 32 32 H 1.08995 * 109.47162 * 60.00950 * 1 2 3 33 33 H 0.97001 * 120.00416 * 264.99988 * 4 2 1 34 34 H 1.08996 * 110.01471 * 59.30179 * 7 5 4 35 35 H 1.09000 * 110.49076 * 335.78567 * 8 7 5 36 36 H 1.09001 * 110.48749 * 98.42954 * 8 7 5 37 37 H 1.08992 * 110.71845 * 279.57543 * 9 8 7 38 38 H 1.09003 * 110.92031 * 156.29743 * 9 8 7 39 39 H 1.09000 * 110.48323 * 203.40794 * 10 9 8 40 40 H 1.08998 * 110.60419 * 80.81146 * 10 9 8 41 41 H 1.08995 * 110.03589 * 238.56996 * 11 7 5 42 42 H 1.08996 * 110.03265 * 0.02562 * 11 7 5 43 43 H 1.08993 * 109.47423 * 59.99229 * 15 14 12 44 44 H 1.08999 * 109.46541 * 299.99087 * 15 14 12 45 45 H 1.07994 * 119.87633 * 359.96685 * 17 16 15 46 46 H 1.08001 * 120.12375 * 180.27241 * 18 17 16 47 47 H 0.96995 * 119.99922 * 180.02562 * 23 22 20 48 48 H 1.08001 * 120.12524 * 179.97438 * 28 19 18 49 49 H 1.08001 * 119.87435 * 180.02562 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0185 -0.6906 -1.1960 5 6 2.1471 -0.0183 -2.3571 6 8 1.8590 1.1585 -2.4115 7 6 2.6491 -0.7289 -3.5876 8 6 4.0837 -1.2444 -3.3519 9 6 4.7878 -1.0440 -4.7177 10 6 4.1996 0.3008 -5.2122 11 6 2.7223 0.2529 -4.7702 12 6 2.0324 -0.7102 1.2305 13 8 2.7271 -1.6926 1.1198 14 8 1.7081 -0.2517 2.4497 15 6 2.2268 -0.9860 3.5897 16 6 1.7628 -0.3288 4.8640 17 6 2.5370 0.6616 5.4486 18 6 2.1203 1.2727 6.6092 19 6 0.9094 0.8802 7.2088 20 6 0.4744 1.4964 8.4049 21 1 -0.5765 1.5114 8.6534 22 6 1.4058 2.0866 9.2667 23 7 2.6742 1.7821 9.1668 24 14 0.8379 3.3093 10.5597 25 1 0.6158 2.6018 11.8463 26 1 1.8767 4.3547 10.7425 27 1 -0.4302 3.9435 10.1181 28 6 0.1345 -0.1301 6.6096 29 6 0.5680 -0.7233 5.4460 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 2.2492 -1.6317 -1.1525 34 1 1.9890 -1.5608 -3.8334 35 1 4.5780 -0.6569 -2.5782 36 1 4.0700 -2.3000 -3.0802 37 1 4.5349 -1.8520 -5.4042 38 1 5.8680 -0.9701 -4.5917 39 1 4.2709 0.3722 -6.2976 40 1 4.7117 1.1398 -4.7411 41 1 2.0986 -0.1029 -5.5902 42 1 2.3953 1.2434 -4.4540 43 1 3.3163 -0.9857 3.5570 44 1 1.8626 -2.0128 3.5567 45 1 3.4686 0.9575 4.9893 46 1 2.7228 2.0471 7.0605 47 1 3.3197 2.1909 9.7643 48 1 -0.7963 -0.4392 7.0617 49 1 -0.0252 -1.4986 4.9841 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776115276.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:07 Heat of formation + Delta-G solvation = -128.673490 kcal Electronic energy + Delta-G solvation = -29004.214874 eV Core-core repulsion = 24894.807120 eV Total energy + Delta-G solvation = -4109.407754 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.86974 -39.99289 -37.83750 -37.44265 -36.32879 -35.20680 -33.91410 -31.65830 -30.73158 -29.41327 -29.20102 -28.90695 -27.31554 -25.13269 -23.78364 -22.33284 -21.13343 -21.08458 -20.54404 -20.10868 -19.98622 -18.14171 -17.42968 -17.17842 -16.76324 -16.33945 -15.97506 -15.71153 -15.37181 -15.02867 -14.61941 -14.25091 -14.11609 -13.90977 -13.74551 -13.64529 -13.20101 -12.82027 -12.58585 -12.41293 -12.26811 -12.10538 -12.06979 -11.79105 -11.68748 -11.57428 -11.46169 -11.43878 -11.30792 -11.14926 -11.13772 -10.85029 -10.68618 -10.67823 -10.33666 -10.25442 -10.02368 -9.74361 -9.51529 -9.46054 -9.24464 -7.60237 -7.49795 -6.90563 -4.49797 2.18996 2.20241 2.40054 2.71250 2.96947 2.99990 3.01154 3.07218 3.36541 3.83361 4.09488 4.21580 4.35389 4.45084 4.73391 4.81145 4.90915 4.96925 4.98602 5.09061 5.13531 5.24792 5.31251 5.47255 5.50071 5.55249 5.57180 5.58710 5.60250 5.63785 5.75136 5.79417 5.94145 5.96271 5.98556 6.02638 6.15292 6.20330 6.27240 6.67643 6.83680 6.94171 7.14065 7.19636 7.22385 7.47835 7.68778 7.82673 7.92385 7.94873 7.96569 8.15515 8.50269 8.75029 8.82926 10.03539 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.024348 B = 0.001698 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.707422 B =16488.936327 C =16560.400255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.149 3.851 3 H 0.125 0.875 4 N -0.716 5.716 5 C 0.524 3.476 6 O -0.535 6.535 7 C -0.111 4.111 8 C -0.117 4.117 9 C -0.124 4.124 10 C -0.125 4.125 11 C -0.119 4.119 12 C 0.455 3.545 13 O -0.518 6.518 14 O -0.342 6.342 15 C 0.137 3.863 16 C -0.238 4.238 17 C -0.074 4.074 18 C -0.170 4.170 19 C 0.119 3.881 20 C -0.455 4.455 21 H 0.081 0.919 22 C 0.075 3.925 23 N -0.785 5.785 24 Si 0.910 3.090 25 H -0.269 1.269 26 H -0.274 1.274 27 H -0.259 1.259 28 C -0.230 4.230 29 C -0.062 4.062 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.410 0.590 34 H 0.100 0.900 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.091 0.909 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.089 0.911 46 H 0.120 0.880 47 H 0.283 0.717 48 H 0.095 0.905 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.484 -4.900 -22.207 22.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.043 3.957 3 H 0.142 0.858 4 N -0.370 5.370 5 C 0.311 3.689 6 O -0.412 6.412 7 C -0.133 4.133 8 C -0.155 4.155 9 C -0.161 4.161 10 C -0.163 4.163 11 C -0.157 4.157 12 C 0.298 3.702 13 O -0.407 6.407 14 O -0.257 6.257 15 C 0.065 3.935 16 C -0.240 4.240 17 C -0.093 4.093 18 C -0.190 4.190 19 C 0.116 3.884 20 C -0.484 4.484 21 H 0.099 0.901 22 C -0.144 4.144 23 N -0.410 5.410 24 Si 0.734 3.266 25 H -0.194 1.194 26 H -0.199 1.199 27 H -0.183 1.183 28 C -0.250 4.250 29 C -0.081 4.081 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.246 0.754 34 H 0.118 0.882 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.109 0.891 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.107 0.893 46 H 0.137 0.863 47 H 0.094 0.906 48 H 0.113 0.887 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.715 -4.302 -22.076 22.556 hybrid contribution 0.081 -0.178 0.857 0.879 sum 1.796 -4.480 -21.218 21.760 Atomic orbital electron populations 1.22100 0.91733 1.03223 1.04475 1.20383 0.96379 0.97916 0.81059 0.85759 1.45855 1.67784 1.14871 1.08518 1.20638 0.76692 0.87248 0.84346 1.90687 1.49789 1.15979 1.84722 1.21953 0.98610 0.99417 0.93283 1.22395 0.93085 1.01475 0.98538 1.22510 0.99874 0.97659 0.96072 1.22373 0.95536 0.97679 1.00674 1.22178 0.97105 1.00762 0.95656 1.23516 0.77619 0.82899 0.86212 1.90617 1.36188 1.26304 1.87638 1.86713 1.68938 1.55969 1.14122 1.21786 0.97470 0.93626 0.80626 1.18629 1.00427 1.07807 0.97108 1.20537 0.97397 0.95407 0.95960 1.21297 0.99482 1.02590 0.95587 1.17699 0.90944 0.88347 0.91380 1.19686 0.95014 1.30557 1.03120 0.90114 1.25983 0.94417 0.95585 0.98405 1.69822 1.02823 1.34500 1.33819 0.86271 0.79942 0.80230 0.80191 1.19436 1.19894 1.18265 1.20950 1.02563 1.01802 0.99658 1.20377 0.94266 0.97983 0.95462 0.91907 0.89515 0.90667 0.75361 0.88194 0.90958 0.90633 0.91228 0.91240 0.91485 0.91451 0.91365 0.89090 0.91881 0.91925 0.89316 0.86258 0.90597 0.88672 0.89294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.42 37.16 0.35 -1.34 16 2 C 0.15 1.81 3.09 -69.09 -0.21 1.60 16 3 H 0.12 1.59 7.58 -51.93 -0.39 1.20 16 4 N -0.72 -7.55 4.89 -54.94 -0.27 -7.81 16 5 C 0.52 5.68 6.97 -10.98 -0.08 5.61 16 6 O -0.54 -7.56 14.87 5.56 0.08 -7.47 16 7 C -0.11 -0.87 3.29 -90.65 -0.30 -1.17 16 8 C -0.12 -0.83 6.29 -25.03 -0.16 -0.98 16 9 C -0.12 -0.76 6.91 -24.70 -0.17 -0.93 16 10 C -0.13 -0.85 6.83 -25.07 -0.17 -1.03 16 11 C -0.12 -0.94 6.40 -25.61 -0.16 -1.10 16 12 C 0.46 6.78 7.32 36.00 0.26 7.05 16 13 O -0.52 -8.39 15.59 -18.75 -0.29 -8.69 16 14 O -0.34 -5.90 10.11 -39.27 -0.40 -6.29 16 15 C 0.14 2.50 5.58 36.01 0.20 2.70 16 16 C -0.24 -5.14 5.54 -104.33 -0.58 -5.71 16 17 C -0.07 -1.71 9.67 -39.66 -0.38 -2.09 16 18 C -0.17 -4.31 8.70 -38.87 -0.34 -4.65 16 19 C 0.12 3.09 5.57 -106.82 -0.60 2.49 16 20 C -0.46 -11.67 9.05 -37.74 -0.34 -12.01 16 21 H 0.08 1.98 7.91 -52.49 -0.41 1.56 16 22 C 0.08 1.82 5.14 -17.34 -0.09 1.73 16 23 N -0.79 -19.62 10.97 55.55 0.61 -19.01 16 24 Si 0.91 17.97 29.59 -169.99 -5.03 12.94 16 25 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 26 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 27 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 28 C -0.23 -5.48 9.80 -38.87 -0.38 -5.86 16 29 C -0.06 -1.36 9.67 -39.66 -0.38 -1.75 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.09 0.97 8.11 -51.93 -0.42 0.55 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.41 3.86 7.78 -40.82 -0.32 3.55 16 34 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.61 7.85 -51.93 -0.41 0.21 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.09 0.92 6.39 -51.93 -0.33 0.59 16 43 H 0.06 1.12 8.07 -51.93 -0.42 0.71 16 44 H 0.06 1.08 8.07 -51.93 -0.42 0.66 16 45 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 46 H 0.12 3.11 6.18 -52.49 -0.32 2.78 16 47 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 48 H 0.10 2.12 8.06 -52.49 -0.42 1.69 16 49 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 406.25 15.07 6.12 6.12 Total: -1.00 -28.71 406.25 -10.36 -39.07 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -7.66 Total: 8.58 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: -3.53 Total: -17.44 kcal Atomic # 7 Polarization: -27.17 SS G_CDS: 0.34 Total: -26.83 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -0.61 Total: -22.45 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.94 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -28.71 -10.36 -39.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776115276.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.603 kcal (2) G-P(sol) polarization free energy of solvation -28.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds