Wall clock time and date at job start Wed Apr 1 2020 03:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34236 * 116.99801 * 2 1 4 4 O 1.20822 * 119.99642 * 359.97438 * 3 2 1 5 5 C 1.50694 * 119.99962 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.47115 * 59.99977 * 5 3 2 7 7 C 1.53000 * 109.47034 * 299.99943 * 5 3 2 8 8 C 1.52995 * 109.47248 * 180.02562 * 5 3 2 9 9 N 1.46500 * 109.47308 * 185.00087 * 8 5 3 10 10 C 1.34778 * 119.99708 * 269.99585 * 9 8 5 11 11 O 1.21278 * 119.99916 * 4.42445 * 10 9 8 12 12 C 1.50698 * 119.99679 * 184.42163 * 10 9 8 13 13 C 1.50700 * 109.47004 * 185.04951 * 12 10 9 14 14 C 1.37633 * 120.13080 * 264.99933 * 13 12 10 15 15 C 1.38612 * 120.25111 * 180.02562 * 14 13 12 16 16 C 1.38657 * 120.50270 * 359.97438 * 15 14 13 17 17 C 1.37595 * 120.24664 * 0.02562 * 16 15 14 18 18 C 1.40700 * 120.12581 * 84.72522 * 13 12 10 19 19 C 1.41396 * 120.24769 * 359.97438 * 18 13 12 20 20 H 1.08006 * 119.99564 * 325.21453 * 19 18 13 21 21 C 1.39937 * 120.00472 * 145.21365 * 19 18 13 22 22 N 1.30831 * 119.99987 * 4.31399 * 21 19 18 23 23 Si 1.86802 * 120.00389 * 184.31552 * 21 19 18 24 24 H 1.48506 * 109.46846 * 359.97438 * 23 21 19 25 25 H 1.48492 * 109.47334 * 119.99790 * 23 21 19 26 26 H 1.48502 * 109.47307 * 239.99993 * 23 21 19 27 27 C 1.46500 * 120.00333 * 89.99789 * 9 8 5 28 28 C 1.53002 * 117.49595 * 2.65818 * 27 9 8 29 29 C 1.53004 * 60.00113 * 252.51002 * 28 27 9 30 30 H 1.09004 * 109.46963 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47500 * 300.00111 * 1 2 3 32 32 H 1.09005 * 109.47559 * 60.00401 * 1 2 3 33 33 H 1.09003 * 109.47197 * 299.99984 * 7 5 3 34 34 H 1.09006 * 109.47339 * 59.99749 * 7 5 3 35 35 H 1.09004 * 109.47114 * 179.97438 * 7 5 3 36 36 H 1.09001 * 109.46727 * 304.99754 * 8 5 3 37 37 H 1.08998 * 109.47589 * 64.99589 * 8 5 3 38 38 H 1.09003 * 109.47322 * 305.04978 * 12 10 9 39 39 H 1.09000 * 109.47547 * 65.05082 * 12 10 9 40 40 H 1.07999 * 119.87420 * 0.02562 * 14 13 12 41 41 H 1.08005 * 119.75033 * 179.97438 * 15 14 13 42 42 H 1.08000 * 119.87744 * 179.97438 * 16 15 14 43 43 H 1.08003 * 120.13074 * 179.97438 * 17 16 15 44 44 H 0.97001 * 119.99711 * 180.02562 * 22 21 19 45 45 H 1.08991 * 115.55657 * 148.36645 * 27 9 8 46 46 H 1.08999 * 117.50183 * 0.02562 * 28 27 9 47 47 H 1.09001 * 117.49747 * 145.02559 * 28 27 9 48 48 H 1.08997 * 117.50248 * 252.51295 * 29 28 27 49 49 H 1.09000 * 117.49530 * 107.48607 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2750 0.0006 6 1 3.9563 0.7807 -0.8892 7 6 4.1128 0.5817 1.2502 8 6 4.0000 2.7421 0.0011 9 7 5.4580 2.8204 -0.1187 10 6 6.2258 2.8273 0.9890 11 8 5.7163 2.6881 2.0807 12 6 7.7172 3.0080 0.8709 13 6 8.3509 2.8548 2.2295 14 6 8.6090 3.9652 3.0007 15 6 9.1923 3.8272 4.2505 16 6 9.5218 2.5720 4.7387 17 6 9.2729 1.4480 3.9850 18 6 8.6758 1.5756 2.7170 19 6 8.4095 0.4271 1.9364 20 1 7.5342 0.3948 1.3044 21 6 9.2800 -0.6676 1.9825 22 7 10.2933 -0.6632 2.8101 23 14 8.9954 -2.1352 0.8625 24 1 7.7906 -1.8948 0.0281 25 1 10.1772 -2.3238 -0.0165 26 1 8.7914 -3.3542 1.6858 27 6 6.0815 2.8911 -1.4425 28 6 5.1540 2.9423 -2.6584 29 6 5.9461 1.6692 -2.3534 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 3.7227 1.0760 2.1399 34 1 3.8037 -0.4636 1.2503 35 1 5.2013 0.6384 1.2504 36 1 3.5381 3.2578 -0.8408 37 1 3.6862 3.2136 0.9324 38 1 8.1220 2.2554 0.1942 39 1 7.9329 4.0022 0.4794 40 1 8.3560 4.9478 2.6306 41 1 9.3916 4.7041 4.8487 42 1 9.9763 2.4762 5.7137 43 1 9.5308 0.4712 4.3669 44 1 10.8969 -1.4219 2.8418 45 1 7.0116 3.4570 -1.4946 46 1 4.0800 2.9237 -2.4733 47 1 5.4740 3.5420 -3.5105 48 1 6.7871 1.4315 -3.0048 49 1 5.3932 0.8128 -1.9676 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776881980.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:49 Heat of formation + Delta-G solvation = -73.136618 kcal Electronic energy + Delta-G solvation = -31577.414535 eV Core-core repulsion = 27470.415041 eV Total energy + Delta-G solvation = -4106.999494 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.83353 -39.80978 -37.80444 -36.87898 -36.65747 -34.50440 -33.52573 -32.38862 -31.47811 -29.38976 -28.09101 -27.43669 -26.07762 -24.86749 -23.65518 -22.58828 -22.17631 -20.86310 -20.55984 -19.77914 -18.74930 -17.53491 -17.14020 -17.03664 -16.72572 -16.43558 -15.77938 -15.37289 -15.07519 -14.58217 -14.40537 -14.30665 -13.81905 -13.64743 -13.51975 -13.33684 -12.98825 -12.61478 -12.46743 -12.36645 -12.12347 -11.94088 -11.83883 -11.69601 -11.53642 -11.47073 -11.14081 -10.97969 -10.96619 -10.95739 -10.86824 -10.78983 -10.61808 -10.56224 -10.32895 -10.29103 -9.51463 -9.42143 -9.17258 -9.09461 -8.31137 -7.28285 -7.14888 -6.57694 -4.36177 2.10294 2.48764 2.80067 2.98373 3.09289 3.12470 3.17626 3.26655 3.31616 3.81246 3.98155 4.58571 4.64055 4.74069 4.78579 4.81649 4.86711 4.91501 4.99040 4.99153 5.17412 5.24435 5.33318 5.49924 5.67114 5.71566 5.77087 5.88254 5.94119 6.00584 6.02684 6.04705 6.14593 6.17851 6.23602 6.29741 6.44261 6.53076 6.60836 6.72544 6.81855 7.16395 7.33397 7.47604 7.62523 7.65278 7.75554 7.93808 8.13768 8.14910 8.36281 8.69669 8.76175 8.97754 9.04986 10.32930 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009935 B = 0.003960 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2817.633971 B = 7068.584031 C = 7779.816650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.356 6.356 3 C 0.472 3.528 4 O -0.511 6.511 5 C -0.102 4.102 6 H 0.108 0.892 7 C -0.139 4.139 8 C 0.130 3.870 9 N -0.597 5.597 10 C 0.523 3.477 11 O -0.509 6.509 12 C -0.070 4.070 13 C -0.169 4.169 14 C -0.089 4.089 15 C -0.227 4.227 16 C -0.114 4.114 17 C -0.148 4.148 18 C 0.122 3.878 19 C -0.457 4.457 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.812 5.812 23 Si 0.905 3.095 24 H -0.261 1.261 25 H -0.275 1.275 26 H -0.275 1.275 27 C 0.080 3.920 28 C -0.190 4.190 29 C -0.196 4.196 30 H 0.100 0.900 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.128 0.872 44 H 0.276 0.724 45 H 0.134 0.866 46 H 0.098 0.902 47 H 0.103 0.897 48 H 0.104 0.896 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.043 1.465 -11.295 15.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.273 6.273 3 C 0.315 3.685 4 O -0.399 6.399 5 C -0.123 4.123 6 H 0.125 0.875 7 C -0.196 4.196 8 C 0.007 3.993 9 N -0.331 5.331 10 C 0.314 3.686 11 O -0.382 6.382 12 C -0.110 4.110 13 C -0.171 4.171 14 C -0.107 4.107 15 C -0.247 4.247 16 C -0.133 4.133 17 C -0.168 4.168 18 C 0.120 3.880 19 C -0.488 4.488 20 H 0.090 0.910 21 C -0.142 4.142 22 N -0.439 5.439 23 Si 0.730 3.270 24 H -0.185 1.185 25 H -0.200 1.200 26 H -0.201 1.201 27 C -0.025 4.025 28 C -0.228 4.228 29 C -0.234 4.234 30 H 0.118 0.882 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.110 0.890 38 H 0.116 0.884 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.145 0.855 44 H 0.087 0.913 45 H 0.151 0.849 46 H 0.116 0.884 47 H 0.122 0.878 48 H 0.122 0.878 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -11.347 1.540 -10.570 15.584 hybrid contribution -0.303 -0.751 -0.617 1.018 sum -11.650 0.789 -11.187 16.171 Atomic orbital electron populations 1.23259 0.76606 1.03614 1.02461 1.86541 1.23203 1.33550 1.83963 1.23840 0.91922 0.81219 0.71558 1.90648 1.67301 1.36308 1.45612 1.21697 0.86629 1.00507 1.03427 0.87460 1.21827 1.03711 0.99391 0.94667 1.21219 0.80791 0.92908 1.04379 1.47575 1.05254 1.75027 1.05241 1.21202 0.89872 0.74726 0.82846 1.90698 1.74734 1.46534 1.26203 1.20319 0.89614 1.02053 0.98968 1.19207 1.09380 0.93669 0.94867 1.20314 0.99609 0.96025 0.94751 1.20383 1.10498 0.96009 0.97782 1.20761 1.00746 0.93525 0.98253 1.21595 1.03117 0.97743 0.94298 1.17392 0.88973 0.90959 0.90712 1.19425 1.08231 0.98222 1.22971 0.90954 1.25821 0.94365 0.98840 0.95157 1.69772 1.12411 1.30271 1.31477 0.86307 0.79224 0.81000 0.80471 1.18519 1.20035 1.20070 1.21731 0.98695 1.01933 0.80153 1.23341 0.98608 1.01829 0.98989 1.23518 1.03351 0.92829 1.03735 0.88160 0.91870 0.92023 0.91508 0.92184 0.89533 0.89741 0.88957 0.88395 0.90549 0.89744 0.89656 0.89562 0.85454 0.91343 0.84887 0.88400 0.87848 0.87810 0.88472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 101.05 1.07 1.38 16 2 O -0.36 -4.45 10.47 -39.27 -0.41 -4.86 16 3 C 0.47 6.50 7.25 36.00 0.26 6.76 16 4 O -0.51 -7.90 15.67 -18.75 -0.29 -8.20 16 5 C -0.10 -1.40 3.02 -91.78 -0.28 -1.67 16 6 H 0.11 1.31 5.74 -51.93 -0.30 1.02 16 7 C -0.14 -2.23 7.81 37.16 0.29 -1.94 16 8 C 0.13 1.84 3.88 -4.04 -0.02 1.82 16 9 N -0.60 -8.76 2.69 -166.11 -0.45 -9.21 16 10 C 0.52 9.76 5.98 -10.99 -0.07 9.70 16 11 O -0.51 -11.36 13.50 5.56 0.08 -11.28 16 12 C -0.07 -1.32 3.74 -29.04 -0.11 -1.43 16 13 C -0.17 -3.95 4.44 -103.91 -0.46 -4.41 16 14 C -0.09 -2.01 9.66 -39.66 -0.38 -2.40 16 15 C -0.23 -5.23 10.05 -39.29 -0.39 -5.63 16 16 C -0.11 -2.76 10.02 -39.66 -0.40 -3.16 16 17 C -0.15 -3.90 8.68 -38.87 -0.34 -4.24 16 18 C 0.12 3.16 5.55 -106.82 -0.59 2.57 16 19 C -0.46 -11.61 7.92 -37.74 -0.30 -11.91 16 20 H 0.07 1.78 6.77 -52.48 -0.36 1.43 16 21 C 0.07 1.79 5.42 -17.34 -0.09 1.70 16 22 N -0.81 -20.77 10.59 55.55 0.59 -20.18 16 23 Si 0.90 18.50 29.56 -169.99 -5.03 13.47 16 24 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 25 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 26 H -0.28 -5.64 7.11 56.52 0.40 -5.23 16 27 C 0.08 0.93 5.78 -67.93 -0.39 0.53 16 28 C -0.19 -1.74 9.74 -26.73 -0.26 -2.00 16 29 C -0.20 -2.04 10.19 -26.73 -0.27 -2.31 16 30 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 32 H 0.06 0.52 8.13 -51.93 -0.42 0.09 16 33 H 0.07 1.16 7.93 -51.93 -0.41 0.74 16 34 H 0.06 0.88 8.11 -51.93 -0.42 0.46 16 35 H 0.09 1.64 5.77 -51.93 -0.30 1.34 16 36 H 0.08 1.05 5.81 -51.93 -0.30 0.74 16 37 H 0.09 1.50 7.49 -51.93 -0.39 1.12 16 38 H 0.10 1.82 6.97 -51.93 -0.36 1.46 16 39 H 0.08 1.22 7.85 -51.93 -0.41 0.82 16 40 H 0.08 1.70 8.06 -52.49 -0.42 1.27 16 41 H 0.09 1.74 8.06 -52.48 -0.42 1.32 16 42 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 43 H 0.13 3.49 6.13 -52.48 -0.32 3.17 16 44 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 45 H 0.13 1.39 7.13 -51.93 -0.37 1.02 16 46 H 0.10 0.92 6.11 -51.93 -0.32 0.60 16 47 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 49 H 0.10 1.09 6.00 -51.93 -0.31 0.78 16 LS Contribution 394.46 15.07 5.94 5.94 Total: -1.00 -30.53 394.46 -9.39 -39.91 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -7.08 Total: 11.05 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: -2.73 Total: -16.64 kcal Atomic # 7 Polarization: -29.54 SS G_CDS: 0.14 Total: -29.39 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.63 Total: -24.34 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.47 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -30.53 -9.39 -39.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776881980.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.225 kcal (2) G-P(sol) polarization free energy of solvation -30.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds