Wall clock time and date at job start Wed Apr 1 2020 03:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34236 * 116.99801 * 2 1 4 4 O 1.20822 * 119.99642 * 359.97438 * 3 2 1 5 5 C 1.50694 * 119.99962 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.47115 * 59.99977 * 5 3 2 7 7 C 1.53000 * 109.47034 * 299.99943 * 5 3 2 8 8 C 1.52995 * 109.47248 * 180.02562 * 5 3 2 9 9 N 1.46500 * 109.47308 * 185.00087 * 8 5 3 10 10 C 1.34778 * 119.99708 * 269.99585 * 9 8 5 11 11 O 1.21278 * 119.99916 * 4.42445 * 10 9 8 12 12 C 1.50698 * 119.99679 * 184.42163 * 10 9 8 13 13 C 1.50700 * 109.47004 * 185.04951 * 12 10 9 14 14 C 1.37633 * 120.13080 * 264.99933 * 13 12 10 15 15 C 1.38612 * 120.25111 * 180.02562 * 14 13 12 16 16 C 1.38657 * 120.50270 * 359.97438 * 15 14 13 17 17 C 1.37595 * 120.24664 * 0.02562 * 16 15 14 18 18 C 1.40700 * 120.12581 * 84.72522 * 13 12 10 19 19 C 1.41396 * 120.24769 * 359.97438 * 18 13 12 20 20 H 1.08006 * 119.99564 * 325.21453 * 19 18 13 21 21 C 1.39937 * 120.00472 * 145.21365 * 19 18 13 22 22 N 1.30831 * 119.99987 * 4.31399 * 21 19 18 23 23 Si 1.86802 * 120.00389 * 184.31552 * 21 19 18 24 24 H 1.48506 * 109.46846 * 359.97438 * 23 21 19 25 25 H 1.48492 * 109.47334 * 119.99790 * 23 21 19 26 26 H 1.48502 * 109.47307 * 239.99993 * 23 21 19 27 27 C 1.46500 * 120.00333 * 89.99789 * 9 8 5 28 28 C 1.53002 * 117.49595 * 2.65818 * 27 9 8 29 29 C 1.53004 * 60.00113 * 252.51002 * 28 27 9 30 30 H 1.09004 * 109.46963 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47500 * 300.00111 * 1 2 3 32 32 H 1.09005 * 109.47559 * 60.00401 * 1 2 3 33 33 H 1.09003 * 109.47197 * 299.99984 * 7 5 3 34 34 H 1.09006 * 109.47339 * 59.99749 * 7 5 3 35 35 H 1.09004 * 109.47114 * 179.97438 * 7 5 3 36 36 H 1.09001 * 109.46727 * 304.99754 * 8 5 3 37 37 H 1.08998 * 109.47589 * 64.99589 * 8 5 3 38 38 H 1.09003 * 109.47322 * 305.04978 * 12 10 9 39 39 H 1.09000 * 109.47547 * 65.05082 * 12 10 9 40 40 H 1.07999 * 119.87420 * 0.02562 * 14 13 12 41 41 H 1.08005 * 119.75033 * 179.97438 * 15 14 13 42 42 H 1.08000 * 119.87744 * 179.97438 * 16 15 14 43 43 H 1.08003 * 120.13074 * 179.97438 * 17 16 15 44 44 H 0.97001 * 119.99711 * 180.02562 * 22 21 19 45 45 H 1.08991 * 115.55657 * 148.36645 * 27 9 8 46 46 H 1.08999 * 117.50183 * 0.02562 * 28 27 9 47 47 H 1.09001 * 117.49747 * 145.02559 * 28 27 9 48 48 H 1.08997 * 117.50248 * 252.51295 * 29 28 27 49 49 H 1.09000 * 117.49530 * 107.48607 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2750 0.0006 6 1 3.9563 0.7807 -0.8892 7 6 4.1128 0.5817 1.2502 8 6 4.0000 2.7421 0.0011 9 7 5.4580 2.8204 -0.1187 10 6 6.2258 2.8273 0.9890 11 8 5.7163 2.6881 2.0807 12 6 7.7172 3.0080 0.8709 13 6 8.3509 2.8548 2.2295 14 6 8.6090 3.9652 3.0007 15 6 9.1923 3.8272 4.2505 16 6 9.5218 2.5720 4.7387 17 6 9.2729 1.4480 3.9850 18 6 8.6758 1.5756 2.7170 19 6 8.4095 0.4271 1.9364 20 1 7.5342 0.3948 1.3044 21 6 9.2800 -0.6676 1.9825 22 7 10.2933 -0.6632 2.8101 23 14 8.9954 -2.1352 0.8625 24 1 7.7906 -1.8948 0.0281 25 1 10.1772 -2.3238 -0.0165 26 1 8.7914 -3.3542 1.6858 27 6 6.0815 2.8911 -1.4425 28 6 5.1540 2.9423 -2.6584 29 6 5.9461 1.6692 -2.3534 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 3.7227 1.0760 2.1399 34 1 3.8037 -0.4636 1.2503 35 1 5.2013 0.6384 1.2504 36 1 3.5381 3.2578 -0.8408 37 1 3.6862 3.2136 0.9324 38 1 8.1220 2.2554 0.1942 39 1 7.9329 4.0022 0.4794 40 1 8.3560 4.9478 2.6306 41 1 9.3916 4.7041 4.8487 42 1 9.9763 2.4762 5.7137 43 1 9.5308 0.4712 4.3669 44 1 10.8969 -1.4219 2.8418 45 1 7.0116 3.4570 -1.4946 46 1 4.0800 2.9237 -2.4733 47 1 5.4740 3.5420 -3.5105 48 1 6.7871 1.4315 -3.0048 49 1 5.3932 0.8128 -1.9676 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776881980.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:47 Heat of formation + Delta-G solvation = -87.878410 kcal Electronic energy + Delta-G solvation = -31578.053787 eV Core-core repulsion = 27470.415041 eV Total energy + Delta-G solvation = -4107.638746 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.94421 -41.05825 -39.39246 -38.23665 -37.67317 -35.65031 -35.38366 -33.72823 -33.02492 -31.26201 -29.25565 -28.59352 -27.60234 -26.60805 -24.76978 -23.54297 -23.11437 -22.72964 -21.91627 -21.17036 -19.97281 -18.99028 -18.64068 -18.25920 -17.82791 -17.46281 -17.29589 -16.78500 -16.44037 -16.07449 -15.61572 -15.47247 -15.33696 -15.17769 -14.76621 -14.58078 -14.34700 -14.16259 -13.72671 -13.59509 -13.44488 -13.31361 -13.12005 -13.00320 -12.80864 -12.75380 -12.72085 -12.61584 -12.47743 -12.40544 -12.01810 -11.90712 -11.85129 -11.78395 -11.47706 -11.43709 -11.31941 -11.24001 -10.94294 -10.63342 -9.45564 -9.13934 -9.04051 -8.41858 -6.28909 1.00636 1.01714 1.17176 1.40773 1.49802 1.52624 1.55578 1.82189 2.13714 2.26554 2.88258 2.96415 3.49852 3.58807 3.72364 3.74274 3.90676 4.00921 4.07305 4.10471 4.17237 4.26439 4.29585 4.32404 4.43185 4.53118 4.61042 4.64257 4.67412 4.73831 4.74741 4.83484 4.84690 4.88746 4.98414 5.11492 5.16898 5.18508 5.26418 5.29259 5.33837 5.45456 5.56956 5.60596 5.84168 6.07598 6.24082 6.24880 6.47135 6.47769 6.58030 6.80781 7.07600 7.16529 7.37134 8.50634 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009935 B = 0.003960 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2817.633971 B = 7068.584031 C = 7779.816650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.477 3.523 4 O -0.530 6.530 5 C -0.095 4.095 6 H 0.127 0.873 7 C -0.129 4.129 8 C 0.134 3.866 9 N -0.587 5.587 10 C 0.525 3.475 11 O -0.557 6.557 12 C -0.066 4.066 13 C -0.172 4.172 14 C -0.100 4.100 15 C -0.231 4.231 16 C -0.126 4.126 17 C -0.182 4.182 18 C 0.091 3.909 19 C -0.475 4.475 20 H 0.072 0.928 21 C 0.030 3.970 22 N -0.845 5.845 23 Si 0.971 3.029 24 H -0.251 1.251 25 H -0.265 1.265 26 H -0.276 1.276 27 C 0.050 3.950 28 C -0.164 4.164 29 C -0.197 4.197 30 H 0.131 0.869 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.044 0.956 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.108 0.892 37 H 0.065 0.935 38 H 0.100 0.900 39 H 0.109 0.891 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.103 0.897 43 H 0.105 0.895 44 H 0.280 0.720 45 H 0.146 0.854 46 H 0.098 0.902 47 H 0.129 0.871 48 H 0.118 0.882 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.105 1.830 -14.333 18.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C 0.321 3.679 4 O -0.419 6.419 5 C -0.115 4.115 6 H 0.145 0.855 7 C -0.187 4.187 8 C 0.011 3.989 9 N -0.319 5.319 10 C 0.315 3.685 11 O -0.434 6.434 12 C -0.106 4.106 13 C -0.174 4.174 14 C -0.118 4.118 15 C -0.251 4.251 16 C -0.144 4.144 17 C -0.202 4.202 18 C 0.089 3.911 19 C -0.506 4.506 20 H 0.090 0.910 21 C -0.181 4.181 22 N -0.473 5.473 23 Si 0.793 3.207 24 H -0.174 1.174 25 H -0.190 1.190 26 H -0.201 1.201 27 C -0.054 4.054 28 C -0.201 4.201 29 C -0.235 4.235 30 H 0.149 0.851 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.063 0.937 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.126 0.874 37 H 0.084 0.916 38 H 0.118 0.882 39 H 0.127 0.873 40 H 0.132 0.868 41 H 0.132 0.868 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.090 0.910 45 H 0.164 0.836 46 H 0.116 0.884 47 H 0.148 0.852 48 H 0.137 0.863 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.420 1.911 -13.654 18.557 hybrid contribution -0.028 -0.811 0.351 0.884 sum -12.447 1.100 -13.304 18.252 Atomic orbital electron populations 1.23595 0.74526 1.05813 1.02716 1.86519 1.25244 1.32596 1.83456 1.23677 0.91723 0.81395 0.71106 1.90640 1.67659 1.36988 1.46652 1.21585 0.87038 1.00030 1.02841 0.85512 1.21650 1.01683 1.00169 0.95165 1.21199 0.80470 0.93287 1.03971 1.47432 1.05270 1.73436 1.05716 1.21046 0.89892 0.74425 0.83136 1.90683 1.75421 1.49086 1.28241 1.20304 0.89693 1.03952 0.96623 1.19653 1.08086 0.92907 0.96744 1.20737 0.99041 0.97290 0.94699 1.20765 1.09588 0.96380 0.98317 1.21000 1.00868 0.93639 0.98901 1.21583 1.05507 0.97602 0.95513 1.17766 0.89858 0.92589 0.90912 1.19553 1.08599 0.98994 1.23441 0.91039 1.26652 0.93802 1.01295 0.96368 1.69878 1.13301 1.31258 1.32886 0.85299 0.79654 0.77121 0.78610 1.17447 1.19016 1.20118 1.22106 1.00242 1.03931 0.79114 1.23423 0.98118 1.00671 0.97873 1.23572 1.04150 0.92567 1.03259 0.85069 0.92228 0.91207 0.93667 0.91070 0.92398 0.87435 0.91641 0.88200 0.87322 0.86768 0.86850 0.87915 0.87662 0.90966 0.83614 0.88398 0.85239 0.86329 0.89457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 113.37 1.20 1.62 16 2 O -0.36 -8.45 10.47 -51.48 -0.54 -8.99 16 3 C 0.48 12.63 7.25 71.23 0.52 13.15 16 4 O -0.53 -15.86 15.67 21.97 0.34 -15.51 16 5 C -0.09 -2.52 3.02 -11.54 -0.03 -2.55 16 6 H 0.13 2.87 5.74 -2.39 -0.01 2.86 16 7 C -0.13 -4.25 7.81 71.98 0.56 -3.69 16 8 C 0.13 3.67 3.88 86.38 0.33 4.01 16 9 N -0.59 -16.59 2.69 -797.84 -2.15 -18.74 16 10 C 0.52 19.57 5.98 87.66 0.52 20.09 16 11 O -0.56 -25.71 13.50 -3.02 -0.04 -25.75 16 12 C -0.07 -2.46 3.74 29.10 0.11 -2.35 16 13 C -0.17 -8.09 4.44 -19.41 -0.09 -8.18 16 14 C -0.10 -4.45 9.66 22.22 0.21 -4.24 16 15 C -0.23 -10.54 10.05 22.46 0.23 -10.32 16 16 C -0.13 -6.22 10.02 22.22 0.22 -5.99 16 17 C -0.18 -10.07 8.68 22.73 0.20 -9.87 16 18 C 0.09 4.87 5.55 -21.29 -0.12 4.76 16 19 C -0.47 -24.86 7.92 23.46 0.19 -24.67 16 20 H 0.07 3.64 6.77 -2.91 -0.02 3.62 16 21 C 0.03 1.52 5.42 85.25 0.46 1.98 16 22 N -0.84 -44.83 10.59 21.82 0.23 -44.60 16 23 Si 0.97 38.15 29.56 68.60 2.03 40.18 16 24 H -0.25 -9.33 7.11 99.48 0.71 -8.62 16 25 H -0.27 -9.94 7.11 99.48 0.71 -9.24 16 26 H -0.28 -10.77 7.11 99.48 0.71 -10.06 16 27 C 0.05 1.02 5.78 44.99 0.26 1.28 16 28 C -0.16 -2.37 9.74 30.60 0.30 -2.07 16 29 C -0.20 -3.50 10.19 30.60 0.31 -3.19 16 30 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.06 1.01 8.13 -2.39 -0.02 0.99 16 32 H 0.07 1.02 8.13 -2.38 -0.02 1.00 16 33 H 0.04 1.64 7.93 -2.39 -0.02 1.62 16 34 H 0.07 2.10 8.11 -2.38 -0.02 2.08 16 35 H 0.06 2.26 5.77 -2.39 -0.01 2.25 16 36 H 0.11 2.45 5.81 -2.39 -0.01 2.43 16 37 H 0.07 2.18 7.49 -2.39 -0.02 2.16 16 38 H 0.10 3.65 6.97 -2.39 -0.02 3.64 16 39 H 0.11 3.24 7.85 -2.39 -0.02 3.22 16 40 H 0.11 4.34 8.06 -2.91 -0.02 4.31 16 41 H 0.11 4.43 8.06 -2.91 -0.02 4.41 16 42 H 0.10 4.55 8.06 -2.91 -0.02 4.53 16 43 H 0.11 6.15 6.13 -2.91 -0.02 6.13 16 44 H 0.28 13.61 8.30 -92.71 -0.77 12.84 16 45 H 0.15 2.60 7.13 -2.39 -0.02 2.58 16 46 H 0.10 1.46 6.11 -2.39 -0.01 1.45 16 47 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 49 H 0.09 1.74 6.00 -2.39 -0.01 1.73 16 Total: -1.00 -69.70 394.46 6.23 -63.47 By element: Atomic # 1 Polarization: 39.20 SS G_CDS: 0.97 Total: 40.17 kcal Atomic # 6 Polarization: -35.62 SS G_CDS: 5.38 Total: -30.23 kcal Atomic # 7 Polarization: -61.42 SS G_CDS: -1.91 Total: -63.34 kcal Atomic # 8 Polarization: -50.02 SS G_CDS: -0.24 Total: -50.25 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 2.03 Total: 40.18 kcal Total: -69.70 6.23 -63.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776881980.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.408 kcal (2) G-P(sol) polarization free energy of solvation -69.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds