Wall clock time and date at job start Wed Apr 1 2020 04:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45202 * 109.47397 * 2 1 4 4 C 1.34230 * 117.00204 * 179.97438 * 3 2 1 5 5 O 1.20824 * 119.99699 * 0.02562 * 4 3 2 6 6 C 1.50689 * 120.00103 * 179.97438 * 4 3 2 7 7 C 1.53000 * 112.85124 * 48.80476 * 6 4 3 8 8 N 1.46495 * 109.46900 * 309.66564 * 7 6 4 9 9 C 1.34782 * 119.99715 * 179.97438 * 8 7 6 10 10 O 1.21279 * 119.99946 * 359.97438 * 9 8 7 11 11 C 1.50698 * 119.99745 * 180.02562 * 9 8 7 12 12 C 1.50699 * 109.47056 * 180.02562 * 11 9 8 13 13 C 1.37647 * 120.12617 * 265.00043 * 12 11 9 14 14 C 1.38614 * 120.24829 * 179.97438 * 13 12 11 15 15 C 1.38657 * 120.49979 * 0.02562 * 14 13 12 16 16 C 1.37595 * 120.25104 * 0.02677 * 15 14 13 17 17 C 1.40694 * 120.13135 * 84.72260 * 12 11 9 18 18 C 1.41399 * 120.24543 * 359.97438 * 17 12 11 19 19 H 1.08005 * 119.99638 * 333.89827 * 18 17 12 20 20 C 1.39943 * 120.00164 * 153.89306 * 18 17 12 21 21 N 1.30823 * 119.99908 * 343.72253 * 20 18 17 22 22 Si 1.86802 * 119.99958 * 163.71959 * 20 18 17 23 23 H 1.48499 * 109.46755 * 60.00091 * 22 20 18 24 24 H 1.48495 * 109.47154 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.46971 * 300.00337 * 22 20 18 26 26 C 1.53789 * 113.61604 * 277.49622 * 6 4 3 27 27 C 1.53782 * 87.08287 * 220.01788 * 26 6 4 28 28 C 1.53781 * 113.61471 * 180.02562 * 6 4 3 29 29 H 1.08992 * 109.47350 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46898 * 300.00255 * 1 2 3 31 31 H 1.09001 * 109.46930 * 59.99953 * 1 2 3 32 32 H 1.09001 * 109.46930 * 120.00047 * 2 1 3 33 33 H 1.09003 * 109.46898 * 239.99745 * 2 1 3 34 34 H 1.09001 * 109.46751 * 69.66642 * 7 6 4 35 35 H 1.09001 * 109.47119 * 189.66411 * 7 6 4 36 36 H 0.96996 * 120.00233 * 0.02562 * 8 7 6 37 37 H 1.09001 * 109.47155 * 299.99590 * 11 9 8 38 38 H 1.09001 * 109.47656 * 59.99936 * 11 9 8 39 39 H 1.07999 * 119.87367 * 359.97438 * 13 12 11 40 40 H 1.08001 * 119.74687 * 179.97438 * 14 13 12 41 41 H 1.08005 * 119.87312 * 180.02562 * 15 14 13 42 42 H 1.08001 * 120.12531 * 179.97438 * 16 15 14 43 43 H 0.97001 * 119.99724 * 179.97438 * 21 20 18 44 44 H 1.09002 * 113.61358 * 334.57339 * 26 6 4 45 45 H 1.09004 * 113.61060 * 105.46924 * 26 6 4 46 46 H 1.08996 * 113.61816 * 270.88298 * 27 26 6 47 47 H 1.08997 * 113.60832 * 139.97951 * 27 26 6 48 48 H 1.08998 * 113.61482 * 254.52858 * 28 6 4 49 49 H 1.09000 * 113.61759 * 25.43559 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9373 0.0000 7 6 3.2893 3.8419 1.0601 8 7 1.8298 3.7716 0.9553 9 6 1.0586 4.4907 1.7948 10 8 1.5729 5.1955 2.6371 11 6 -0.4428 4.4179 1.6875 12 6 -1.0648 5.3090 2.7315 13 6 -1.4554 4.7853 3.9430 14 6 -2.0273 5.6027 4.9054 15 6 -2.2132 6.9547 4.6601 16 6 -1.8313 7.4997 3.4558 17 6 -1.2433 6.6806 2.4739 18 6 -0.8400 7.2311 1.2355 19 1 -0.0503 6.7619 0.6676 20 6 -1.4643 8.3838 0.7457 21 7 -2.6089 8.7711 1.2470 22 14 -0.6632 9.3696 -0.6240 23 1 -0.5040 8.5101 -1.8245 24 1 -1.5184 10.5362 -0.9597 25 1 0.6700 9.8463 -0.1762 26 6 3.9871 3.5760 -1.3974 27 6 5.3571 4.1418 -0.9877 28 6 5.4583 2.9679 0.0001 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 3.5989 3.5108 2.0513 35 1 3.6159 4.8697 0.9019 36 1 1.4185 3.2070 0.2824 37 1 -0.7527 4.7492 0.6963 38 1 -0.7691 3.3900 1.8455 39 1 -1.3157 3.7335 4.1445 40 1 -2.3312 5.1831 5.8530 41 1 -2.6594 7.5824 5.4174 42 1 -1.9774 8.5529 3.2668 43 1 -3.0415 9.5703 0.9078 44 1 4.0395 2.8489 -2.2078 45 1 3.2301 4.3425 -1.5634 46 1 5.2999 5.1166 -0.5034 47 1 6.0999 4.1069 -1.7846 48 1 5.8895 3.2434 0.9625 49 1 5.9129 2.0747 -0.4285 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776949115.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:46 Heat of formation + Delta-G solvation = -92.060822 kcal Electronic energy + Delta-G solvation = -31009.464749 eV Core-core repulsion = 26901.644639 eV Total energy + Delta-G solvation = -4107.820109 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.35834 -39.26395 -38.67025 -37.24117 -36.66039 -33.90053 -33.57163 -31.92740 -31.63283 -29.41735 -28.75888 -26.73406 -26.10597 -25.23012 -24.52873 -23.29839 -21.72154 -20.88671 -20.46067 -19.51018 -18.94404 -17.91076 -17.11195 -16.93882 -16.81748 -16.16446 -15.68721 -15.36907 -15.11015 -14.70285 -14.43865 -14.35295 -14.20434 -13.66537 -13.46572 -13.13071 -13.04426 -12.83915 -12.70738 -12.56562 -12.52249 -12.17640 -11.96168 -11.76922 -11.65923 -11.56563 -11.51243 -11.12072 -10.96506 -10.93104 -10.84929 -10.75163 -10.73567 -10.63672 -10.36790 -10.35865 -9.43584 -9.32548 -9.12461 -9.08739 -8.63804 -7.25896 -7.23871 -6.68924 -4.29380 1.94417 2.38856 2.83849 3.01960 3.08371 3.11463 3.31692 3.42113 3.56660 3.96743 4.10221 4.20053 4.39721 4.45195 4.50342 4.70987 4.71768 4.76495 5.03498 5.10648 5.31961 5.42550 5.44555 5.53204 5.57646 5.59001 5.65204 5.66558 5.76795 5.77872 5.83159 5.90050 6.05879 6.10047 6.20664 6.25750 6.33981 6.49353 6.56088 6.83224 6.88190 7.13427 7.34833 7.47591 7.50719 7.69659 7.96259 8.06595 8.14289 8.18331 8.36808 8.69867 8.94753 8.96984 9.06906 10.25235 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010245 B = 0.003587 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2732.505540 B = 7805.120481 C = 9139.510828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.063 3.937 3 O -0.354 6.354 4 C 0.482 3.518 5 O -0.507 6.507 6 C -0.096 4.096 7 C 0.148 3.852 8 N -0.741 5.741 9 C 0.516 3.484 10 O -0.524 6.524 11 C -0.069 4.069 12 C -0.179 4.179 13 C -0.082 4.082 14 C -0.240 4.240 15 C -0.108 4.108 16 C -0.159 4.159 17 C 0.129 3.871 18 C -0.456 4.456 19 H 0.074 0.926 20 C 0.077 3.923 21 N -0.796 5.796 22 Si 0.903 3.097 23 H -0.266 1.266 24 H -0.279 1.279 25 H -0.264 1.264 26 C -0.121 4.121 27 C -0.139 4.139 28 C -0.111 4.111 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.403 0.597 37 H 0.095 0.905 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.117 0.883 43 H 0.279 0.721 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.091 0.909 47 H 0.077 0.923 48 H 0.082 0.918 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.583 -12.546 -7.813 17.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.011 4.011 3 O -0.270 6.270 4 C 0.325 3.675 5 O -0.395 6.395 6 C -0.098 4.098 7 C 0.023 3.977 8 N -0.400 5.400 9 C 0.303 3.697 10 O -0.398 6.398 11 C -0.108 4.108 12 C -0.181 4.181 13 C -0.100 4.100 14 C -0.259 4.259 15 C -0.126 4.126 16 C -0.179 4.179 17 C 0.127 3.873 18 C -0.486 4.486 19 H 0.092 0.908 20 C -0.140 4.140 21 N -0.422 5.422 22 Si 0.727 3.273 23 H -0.191 1.191 24 H -0.204 1.204 25 H -0.189 1.189 26 C -0.158 4.158 27 C -0.177 4.177 28 C -0.148 4.148 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.101 0.899 36 H 0.242 0.758 37 H 0.114 0.886 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.134 0.866 43 H 0.090 0.910 44 H 0.106 0.894 45 H 0.107 0.893 46 H 0.110 0.890 47 H 0.096 0.904 48 H 0.101 0.899 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.941 -12.164 -7.228 17.293 hybrid contribution 0.095 -0.060 -0.874 0.881 sum 10.036 -12.224 -8.102 17.771 Atomic orbital electron populations 1.21849 0.92206 1.03125 1.04161 1.23076 0.95716 0.79912 1.02403 1.86391 1.24419 1.32594 1.83619 1.23439 0.80557 0.91884 0.71638 1.90638 1.60509 1.42772 1.45537 1.22381 0.97945 0.89442 0.99987 1.20933 0.81745 0.98678 0.96333 1.46323 1.05209 1.49637 1.38834 1.21214 0.90168 0.78288 0.80017 1.90678 1.75311 1.38655 1.35142 1.20233 0.89517 0.99460 1.01623 1.19070 1.09985 0.93745 0.95311 1.20294 0.99103 0.96899 0.93692 1.20297 1.11915 0.94608 0.99072 1.20671 1.00551 0.94593 0.96817 1.21292 1.04240 0.99869 0.92450 1.17326 0.88276 0.89482 0.92218 1.19436 1.17081 1.08176 1.03905 0.90812 1.25867 0.93702 0.96902 0.97530 1.69815 1.12378 1.21790 1.38211 0.86462 0.80337 0.79368 0.81103 1.19106 1.20402 1.18915 1.22993 0.99172 1.00309 0.93342 1.22862 0.96915 0.98504 0.99390 1.22942 0.90717 0.99884 1.01291 0.90237 0.90933 0.91154 0.91256 0.91330 0.91196 0.89909 0.75821 0.88645 0.90742 0.89855 0.89750 0.89652 0.86554 0.90978 0.89405 0.89347 0.89026 0.90404 0.89944 0.88271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 10.29 37.16 0.38 -0.80 16 2 C 0.06 0.58 6.19 37.16 0.23 0.81 16 3 O -0.35 -3.99 7.21 -39.26 -0.28 -4.27 16 4 C 0.48 5.82 7.02 36.00 0.25 6.07 16 5 O -0.51 -7.06 15.65 -18.75 -0.29 -7.35 16 6 C -0.10 -1.02 1.04 -154.85 -0.16 -1.18 16 7 C 0.15 1.94 5.01 -4.04 -0.02 1.92 16 8 N -0.74 -11.07 5.07 -60.30 -0.31 -11.38 16 9 C 0.52 10.08 7.44 -10.98 -0.08 9.99 16 10 O -0.52 -12.52 16.03 5.56 0.09 -12.43 16 11 C -0.07 -1.35 5.18 -29.04 -0.15 -1.50 16 12 C -0.18 -4.33 4.43 -103.91 -0.46 -4.79 16 13 C -0.08 -1.90 9.66 -39.66 -0.38 -2.28 16 14 C -0.24 -5.64 10.05 -39.29 -0.39 -6.03 16 15 C -0.11 -2.66 10.02 -39.66 -0.40 -3.05 16 16 C -0.16 -4.28 8.69 -38.87 -0.34 -4.62 16 17 C 0.13 3.46 5.56 -106.82 -0.59 2.87 16 18 C -0.46 -11.96 8.14 -37.74 -0.31 -12.27 16 19 H 0.07 1.88 6.67 -52.48 -0.35 1.53 16 20 C 0.08 1.93 5.16 -17.34 -0.09 1.84 16 21 N -0.80 -20.54 10.95 55.55 0.61 -19.93 16 22 Si 0.90 18.76 29.59 -169.99 -5.03 13.73 16 23 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 24 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 25 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 26 C -0.12 -1.08 7.20 -25.91 -0.19 -1.27 16 27 C -0.14 -1.11 7.73 -25.93 -0.20 -1.31 16 28 C -0.11 -0.99 6.99 -25.94 -0.18 -1.18 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 33 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.08 1.11 7.34 -51.93 -0.38 0.73 16 36 H 0.40 5.27 5.84 -40.82 -0.24 5.04 16 37 H 0.10 1.85 7.08 -51.93 -0.37 1.48 16 38 H 0.07 1.24 8.05 -51.93 -0.42 0.82 16 39 H 0.08 1.71 8.06 -52.49 -0.42 1.29 16 40 H 0.08 1.76 8.06 -52.49 -0.42 1.34 16 41 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 42 H 0.12 3.21 6.20 -52.49 -0.33 2.88 16 43 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 44 H 0.09 0.72 8.09 -51.93 -0.42 0.30 16 45 H 0.09 0.84 8.10 -51.93 -0.42 0.42 16 46 H 0.09 0.74 7.64 -51.93 -0.40 0.34 16 47 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 48 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 49 H 0.10 0.92 7.43 -51.93 -0.39 0.53 16 LS Contribution 401.63 15.07 6.05 6.05 Total: -1.00 -31.95 401.63 -9.73 -41.68 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -7.49 Total: 10.68 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: -3.08 Total: -16.78 kcal Atomic # 7 Polarization: -31.61 SS G_CDS: 0.30 Total: -31.31 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.49 Total: -24.05 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.95 -9.73 -41.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776949115.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.381 kcal (2) G-P(sol) polarization free energy of solvation -31.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds