Wall clock time and date at job start Wed Apr 1 2020 03:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.47087 * 2 1 4 4 N 1.46507 * 109.47101 * 239.99719 * 2 1 3 5 5 C 1.34780 * 119.99522 * 85.00316 * 4 2 1 6 6 O 1.21277 * 120.00343 * 359.97438 * 5 4 2 7 7 C 1.50694 * 119.99778 * 180.02562 * 5 4 2 8 8 C 1.50703 * 109.47346 * 179.97438 * 7 5 4 9 9 C 1.37633 * 120.12712 * 264.99989 * 8 7 5 10 10 C 1.38615 * 120.24845 * 179.97438 * 9 8 7 11 11 C 1.38662 * 120.50025 * 0.02562 * 10 9 8 12 12 C 1.37598 * 120.24466 * 0.02562 * 11 10 9 13 13 C 1.40698 * 120.12399 * 84.72415 * 8 7 5 14 14 C 1.41393 * 120.24543 * 359.97438 * 13 8 7 15 15 H 1.07998 * 120.00186 * 333.89730 * 14 13 8 16 16 C 1.39950 * 120.00019 * 153.90449 * 14 13 8 17 17 N 1.30823 * 119.99713 * 343.70056 * 16 14 13 18 18 Si 1.86803 * 120.00237 * 163.70851 * 16 14 13 19 19 H 1.48498 * 109.46792 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.46995 * 119.99438 * 18 16 14 21 21 H 1.48502 * 109.46626 * 239.99525 * 18 16 14 22 22 C 1.50697 * 109.47085 * 120.00226 * 2 1 3 23 23 O 1.20829 * 120.00612 * 119.99698 * 22 2 1 24 24 O 1.34231 * 119.99871 * 300.00162 * 22 2 1 25 25 C 1.45197 * 117.00092 * 180.02562 * 24 22 2 26 26 C 1.54272 * 110.02867 * 267.90457 * 25 24 22 27 27 C 1.54967 * 104.15650 * 217.13502 * 26 25 24 28 28 C 1.54884 * 102.78047 * 37.88839 * 27 26 25 29 29 C 1.53877 * 110.03600 * 150.68702 * 25 24 22 30 30 H 1.08997 * 109.46892 * 299.99951 * 1 2 3 31 31 H 1.09001 * 109.46936 * 60.00229 * 1 2 3 32 32 H 1.09005 * 109.47027 * 179.97438 * 1 2 3 33 33 H 0.96997 * 119.99773 * 265.00279 * 4 2 1 34 34 H 1.09006 * 109.47346 * 300.00296 * 7 5 4 35 35 H 1.09006 * 109.47455 * 59.99449 * 7 5 4 36 36 H 1.07999 * 119.87983 * 0.02562 * 9 8 7 37 37 H 1.07994 * 119.75299 * 180.02562 * 10 9 8 38 38 H 1.07998 * 119.87780 * 179.97438 * 11 10 9 39 39 H 1.08004 * 120.12550 * 179.97438 * 12 11 10 40 40 H 0.97001 * 119.99882 * 179.97438 * 17 16 14 41 41 H 1.08998 * 110.02015 * 29.29325 * 25 24 22 42 42 H 1.08997 * 110.48818 * 335.77861 * 26 25 24 43 43 H 1.09001 * 110.48652 * 98.42774 * 26 25 24 44 44 H 1.09001 * 110.72324 * 279.56747 * 27 26 25 45 45 H 1.09004 * 110.92330 * 156.29457 * 27 26 25 46 46 H 1.08998 * 110.48937 * 203.40551 * 28 27 26 47 47 H 1.09004 * 110.59956 * 80.81432 * 28 27 26 48 48 H 1.09003 * 110.03291 * 238.56475 * 29 25 24 49 49 H 1.08994 * 110.02798 * 359.94910 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1962 5 6 2.1471 -0.0183 -2.3572 6 8 1.8583 1.1583 -2.4117 7 6 2.6489 -0.7288 -3.5877 8 6 2.6992 0.2394 -4.7415 9 6 1.6437 0.3214 -5.6210 10 6 1.6871 1.2114 -6.6828 11 6 2.7917 2.0279 -6.8721 12 6 3.8587 1.9621 -6.0058 13 6 3.8228 1.0671 -4.9203 14 6 4.9103 0.9961 -4.0194 15 1 4.7503 0.6614 -3.0051 16 6 6.1939 1.3596 -4.4420 17 7 6.4592 1.4558 -5.7194 18 14 7.5286 1.7073 -3.1821 19 1 6.9767 1.5305 -1.8149 20 1 8.6588 0.7659 -3.3857 21 1 8.0109 3.1024 -3.3443 22 6 2.0323 -0.7104 1.2304 23 8 2.7270 -1.6929 1.1196 24 8 1.7080 -0.2519 2.4496 25 6 2.2276 -0.9857 3.5896 26 6 1.2103 -2.0556 4.0375 27 6 1.3206 -2.0598 5.5832 28 6 1.5160 -0.5601 5.9169 29 6 2.4223 -0.0354 4.7841 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2490 -1.6318 -1.1526 34 1 3.6480 -1.1215 -3.3986 35 1 1.9760 -1.5507 -3.8326 36 1 0.7780 -0.3095 -5.4829 37 1 0.8542 1.2694 -7.3678 38 1 2.8150 2.7174 -7.7029 39 1 4.7184 2.5986 -6.1552 40 1 7.3488 1.7082 -6.0124 41 1 3.1752 -1.4573 3.3294 42 1 0.2030 -1.7775 3.7279 43 1 1.4794 -3.0311 3.6324 44 1 2.1827 -2.6432 5.9068 45 1 0.4059 -2.4406 6.0377 46 1 2.0077 -0.4450 6.8829 47 1 0.5590 -0.0383 5.9124 48 1 3.4642 -0.0465 5.1041 49 1 2.1276 0.9769 4.5076 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776980530.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:54 Heat of formation + Delta-G solvation = -138.200374 kcal Electronic energy + Delta-G solvation = -30027.143608 eV Core-core repulsion = 25917.322738 eV Total energy + Delta-G solvation = -4109.820871 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.03628 -40.78606 -39.29830 -38.81794 -36.86579 -36.12709 -35.49909 -33.59560 -31.91180 -31.31100 -29.75704 -29.14096 -28.41806 -26.89355 -25.84529 -23.00417 -22.78347 -21.82991 -21.55554 -21.20000 -21.11452 -19.23959 -18.97884 -18.30391 -17.64105 -17.25451 -17.17191 -16.59427 -16.32878 -16.22478 -16.13146 -15.58930 -15.41025 -15.10995 -14.66788 -14.39354 -14.35546 -14.22917 -14.12906 -13.56787 -13.38933 -13.35189 -13.31965 -12.99628 -12.91891 -12.81332 -12.76009 -12.59773 -12.48769 -12.13000 -12.11313 -12.03873 -11.83993 -11.63997 -11.58142 -11.31497 -11.31265 -11.20664 -11.03765 -10.85881 -10.26943 -9.21320 -9.15817 -8.60257 -6.29532 0.93349 0.96662 1.10763 1.31234 1.33649 1.46422 1.50760 1.77879 2.18349 2.31276 2.78038 3.37627 3.48939 3.51862 3.74613 3.90077 3.91582 3.97319 4.16002 4.25528 4.41087 4.41401 4.43800 4.44221 4.53607 4.62178 4.65050 4.69742 4.72313 4.76075 4.81901 4.84162 4.89861 5.00219 5.07042 5.14292 5.16751 5.17667 5.20297 5.32605 5.38519 5.39671 5.42910 5.55787 5.78181 6.04674 6.17505 6.23025 6.42839 6.47306 6.54716 6.75017 6.99506 7.11811 7.31071 8.36248 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013116 B = 0.002667 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.316769 B =10494.556953 C =12066.330686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.150 3.850 3 H 0.110 0.890 4 N -0.718 5.718 5 C 0.527 3.473 6 O -0.561 6.561 7 C -0.068 4.068 8 C -0.188 4.188 9 C -0.088 4.088 10 C -0.241 4.241 11 C -0.116 4.116 12 C -0.193 4.193 13 C 0.095 3.905 14 C -0.482 4.482 15 H 0.068 0.932 16 C 0.037 3.963 17 N -0.825 5.825 18 Si 0.968 3.032 19 H -0.267 1.267 20 H -0.261 1.261 21 H -0.266 1.266 22 C 0.470 3.530 23 O -0.524 6.524 24 O -0.343 6.343 25 C 0.071 3.929 26 C -0.140 4.140 27 C -0.118 4.118 28 C -0.118 4.118 29 C -0.124 4.124 30 H 0.096 0.904 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.415 0.585 34 H 0.094 0.906 35 H 0.116 0.884 36 H 0.119 0.881 37 H 0.116 0.884 38 H 0.105 0.895 39 H 0.096 0.904 40 H 0.286 0.714 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.086 0.914 46 H 0.085 0.915 47 H 0.075 0.925 48 H 0.085 0.915 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.575 -7.313 21.284 24.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.043 3.957 3 H 0.128 0.872 4 N -0.375 5.375 5 C 0.315 3.685 6 O -0.437 6.437 7 C -0.108 4.108 8 C -0.190 4.190 9 C -0.106 4.106 10 C -0.260 4.260 11 C -0.135 4.135 12 C -0.212 4.212 13 C 0.093 3.907 14 C -0.512 4.512 15 H 0.086 0.914 16 C -0.178 4.178 17 N -0.452 5.452 18 Si 0.790 3.210 19 H -0.191 1.191 20 H -0.186 1.186 21 H -0.191 1.191 22 C 0.313 3.687 23 O -0.413 6.413 24 O -0.259 6.259 25 C 0.016 3.984 26 C -0.178 4.178 27 C -0.156 4.156 28 C -0.156 4.156 29 C -0.162 4.162 30 H 0.115 0.885 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.253 0.747 34 H 0.112 0.888 35 H 0.134 0.866 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.123 0.877 39 H 0.114 0.886 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.086 0.914 44 H 0.094 0.906 45 H 0.105 0.895 46 H 0.104 0.896 47 H 0.093 0.907 48 H 0.104 0.896 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.368 -6.724 21.101 24.046 hybrid contribution 1.259 -0.082 -0.033 1.262 sum -8.109 -6.806 21.067 23.578 Atomic orbital electron populations 1.22053 0.89942 1.03974 1.04469 1.20391 0.97629 0.97148 0.80517 0.87244 1.45849 1.68884 1.14905 1.07857 1.21120 0.75814 0.86943 0.84602 1.90670 1.50178 1.17533 1.85359 1.20269 1.03126 0.97593 0.89800 1.19505 0.97679 1.02179 0.99602 1.20737 0.96768 0.98307 0.94821 1.20738 0.99565 1.03431 1.02263 1.20956 0.94489 0.99382 0.98646 1.21300 0.98573 1.02066 0.99306 1.17731 0.92164 0.88995 0.91791 1.19611 0.92504 1.40966 0.98071 0.91409 1.26619 1.01777 0.92092 0.97268 1.69881 1.23224 1.35285 1.16789 0.85369 0.77689 0.79054 0.78891 1.19103 1.18551 1.19099 1.23679 0.76730 0.82485 0.85835 1.90644 1.36371 1.26968 1.87282 1.86586 1.69157 1.55658 1.14465 1.23850 0.97943 0.93394 0.83166 1.22818 0.99276 0.97628 0.98030 1.22468 1.03188 0.96980 0.92939 1.22359 0.99916 0.95449 0.97865 1.22320 1.01790 0.99325 0.92719 0.88539 0.91519 0.90600 0.74724 0.88752 0.86558 0.86282 0.86549 0.87659 0.88559 0.90373 0.90800 0.90136 0.91376 0.90642 0.89518 0.89588 0.90667 0.89610 0.90154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 9.42 71.98 0.68 -2.41 16 2 C 0.15 4.01 3.09 44.24 0.14 4.15 16 3 H 0.11 3.32 7.58 -2.39 -0.02 3.30 16 4 N -0.72 -21.60 4.95 -446.10 -2.21 -23.81 16 5 C 0.53 20.25 7.40 87.65 0.65 20.90 16 6 O -0.56 -26.26 15.70 -3.02 -0.05 -26.31 16 7 C -0.07 -2.65 5.18 29.10 0.15 -2.50 16 8 C -0.19 -9.05 4.43 -19.41 -0.09 -9.13 16 9 C -0.09 -3.93 9.66 22.22 0.21 -3.72 16 10 C -0.24 -10.88 10.05 22.46 0.23 -10.66 16 11 C -0.12 -5.74 10.02 22.22 0.22 -5.51 16 12 C -0.19 -10.74 8.69 22.73 0.20 -10.54 16 13 C 0.10 5.28 5.56 -21.29 -0.12 5.16 16 14 C -0.48 -26.51 8.14 23.46 0.19 -26.32 16 15 H 0.07 3.68 6.67 -2.91 -0.02 3.66 16 16 C 0.04 1.92 5.16 85.26 0.44 2.36 16 17 N -0.83 -44.44 10.96 21.83 0.24 -44.20 16 18 Si 0.97 40.38 29.59 68.60 2.03 42.41 16 19 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 20 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 21 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 22 C 0.47 12.15 7.32 71.23 0.52 12.67 16 23 O -0.52 -15.64 15.06 21.95 0.33 -15.31 16 24 O -0.34 -7.62 9.70 -51.43 -0.50 -8.12 16 25 C 0.07 1.31 3.23 31.32 0.10 1.41 16 26 C -0.14 -2.07 6.57 31.70 0.21 -1.86 16 27 C -0.12 -1.18 6.91 31.91 0.22 -0.96 16 28 C -0.12 -1.14 6.83 31.67 0.22 -0.92 16 29 C -0.12 -1.70 6.62 31.32 0.21 -1.49 16 30 H 0.10 1.64 8.11 -2.39 -0.02 1.62 16 31 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.42 10.97 7.79 -92.71 -0.72 10.25 16 34 H 0.09 3.74 7.08 -2.38 -0.02 3.72 16 35 H 0.12 3.53 8.05 -2.38 -0.02 3.51 16 36 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16 37 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 38 H 0.11 4.61 8.06 -2.91 -0.02 4.58 16 39 H 0.10 5.62 6.20 -2.91 -0.02 5.60 16 40 H 0.29 13.93 8.30 -92.71 -0.77 13.16 16 41 H 0.07 1.60 7.17 -2.39 -0.02 1.58 16 42 H 0.08 1.17 8.08 -2.39 -0.02 1.15 16 43 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 46 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 47 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 49 H 0.08 1.17 7.96 -2.39 -0.02 1.15 16 Total: -1.00 -69.51 403.86 4.46 -65.05 By element: Atomic # 1 Polarization: 39.43 SS G_CDS: 0.24 Total: 39.66 kcal Atomic # 6 Polarization: -33.75 SS G_CDS: 4.38 Total: -29.37 kcal Atomic # 7 Polarization: -66.04 SS G_CDS: -1.97 Total: -68.01 kcal Atomic # 8 Polarization: -49.52 SS G_CDS: -0.22 Total: -49.74 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 2.03 Total: 42.41 kcal Total: -69.51 4.46 -65.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776980530.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.150 kcal (2) G-P(sol) polarization free energy of solvation -69.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds