Wall clock time and date at job start Wed Apr 1 2020 03:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47285 * 2 1 4 4 O 1.45206 * 109.46738 * 119.99720 * 2 1 3 5 5 C 1.34227 * 117.00081 * 269.99814 * 4 2 1 6 6 O 1.20829 * 119.99900 * 0.02562 * 5 4 2 7 7 C 1.50697 * 120.00187 * 180.02562 * 5 4 2 8 8 C 1.50705 * 109.47299 * 180.02562 * 7 5 4 9 9 C 1.37638 * 120.12365 * 264.99972 * 8 7 5 10 10 C 1.38613 * 120.25053 * 179.97438 * 9 8 7 11 11 C 1.38656 * 120.49682 * 0.02562 * 10 9 8 12 12 C 1.37596 * 120.25313 * 0.02562 * 11 10 9 13 13 C 1.40697 * 120.13102 * 84.71956 * 8 7 5 14 14 C 1.41389 * 120.24134 * 0.02562 * 13 8 7 15 15 H 1.07997 * 120.00387 * 333.89778 * 14 13 8 16 16 C 1.39949 * 119.99971 * 153.89696 * 14 13 8 17 17 N 1.30821 * 119.99901 * 343.70863 * 16 14 13 18 18 Si 1.86803 * 119.99995 * 163.70983 * 16 14 13 19 19 H 1.48492 * 109.47031 * 90.00165 * 18 16 14 20 20 H 1.48499 * 109.46862 * 210.00344 * 18 16 14 21 21 H 1.48501 * 109.47089 * 329.99735 * 18 16 14 22 22 C 1.50695 * 109.47393 * 239.99272 * 2 1 3 23 23 O 1.21276 * 120.00798 * 245.00431 * 22 2 1 24 24 N 1.34775 * 119.99798 * 65.00504 * 22 2 1 25 25 C 1.46503 * 120.00519 * 180.02562 * 24 22 2 26 26 C 1.54267 * 110.03235 * 272.90711 * 25 24 22 27 27 C 1.54959 * 104.16011 * 217.13074 * 26 25 24 28 28 C 1.54893 * 102.77746 * 37.88727 * 27 26 25 29 29 C 1.53871 * 110.03807 * 155.68549 * 25 24 22 30 30 H 1.09003 * 109.47112 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47162 * 300.00602 * 1 2 3 32 32 H 1.08996 * 109.46689 * 60.00329 * 1 2 3 33 33 H 1.09006 * 109.46893 * 299.99860 * 7 5 4 34 34 H 1.08993 * 109.47365 * 59.99864 * 7 5 4 35 35 H 1.08005 * 119.87724 * 359.97438 * 9 8 7 36 36 H 1.07998 * 119.75518 * 179.97438 * 10 9 8 37 37 H 1.08000 * 119.87594 * 179.97438 * 11 10 9 38 38 H 1.07998 * 120.13077 * 179.97438 * 12 11 10 39 39 H 0.97003 * 120.00058 * 179.97438 * 17 16 14 40 40 H 0.97001 * 119.99954 * 359.97438 * 24 22 2 41 41 H 1.09008 * 110.01124 * 34.29409 * 25 24 22 42 42 H 1.09002 * 110.48141 * 335.78002 * 26 25 24 43 43 H 1.09000 * 110.48414 * 98.41818 * 26 25 24 44 44 H 1.08994 * 110.72466 * 279.57356 * 27 26 25 45 45 H 1.08999 * 110.92121 * 156.29059 * 27 26 25 46 46 H 1.08992 * 110.49087 * 203.40172 * 28 27 26 47 47 H 1.09011 * 110.59527 * 80.81493 * 28 27 26 48 48 H 1.08993 * 110.03784 * 238.57384 * 29 25 24 49 49 H 1.09002 * 110.02976 * 0.02562 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0139 -0.6845 1.1857 5 6 2.2171 0.0641 2.2812 6 8 1.9973 1.2518 2.2506 7 6 2.7192 -0.5769 3.5493 8 6 2.8609 0.4732 4.6209 9 6 4.0771 1.0806 4.8363 10 6 4.2103 2.0471 5.8209 11 6 3.1229 2.4128 6.5996 12 6 1.8978 1.8182 6.4026 13 6 1.7492 0.8406 5.4011 14 6 0.4937 0.2273 5.1852 15 1 0.2519 -0.1813 4.2152 16 6 -0.4358 0.1496 6.2286 17 7 -0.0503 0.3429 7.4637 18 14 -2.2268 -0.2303 5.8576 19 1 -2.4384 -1.6997 5.8916 20 1 -3.0914 0.4181 6.8760 21 1 -2.5741 0.2889 4.5104 22 6 2.0324 -0.7105 -1.2303 23 8 2.6530 -1.7468 -1.1214 24 7 1.7921 -0.1944 -2.4519 25 6 2.2799 -0.8853 -3.6481 26 6 3.7223 -0.4392 -3.9647 27 6 3.7716 -0.3861 -5.5126 28 6 2.3727 0.1677 -5.8811 29 6 1.4222 -0.5001 -4.8661 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 2.0102 -1.3371 3.8775 34 1 3.6882 -1.0399 3.3634 35 1 4.9309 0.8031 4.2359 36 1 5.1684 2.5182 5.9834 37 1 3.2381 3.1668 7.3643 38 1 1.0523 2.1043 7.0105 39 1 -0.6947 0.2894 8.1868 40 1 1.2954 0.6343 -2.5391 41 1 2.2478 -1.9641 -3.4949 42 1 3.9179 0.5467 -3.5429 43 1 4.4389 -1.1670 -3.5841 44 1 3.9139 -1.3835 -5.9284 45 1 4.5564 0.2888 -5.8542 46 1 2.1055 -0.1173 -6.8986 47 1 2.3483 1.2519 -5.7706 48 1 0.9745 -1.3919 -5.3046 49 1 0.6431 0.2013 -4.5673 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777165371.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:15 Heat of formation + Delta-G solvation = -122.219232 kcal Electronic energy + Delta-G solvation = -30005.705711 eV Core-core repulsion = 25896.577835 eV Total energy + Delta-G solvation = -4109.127876 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.57029 -39.65654 -38.02761 -37.51723 -35.82532 -34.03327 -33.66397 -32.15125 -31.40805 -29.49979 -29.11620 -27.87409 -27.11273 -25.19392 -24.47823 -21.66846 -21.07679 -20.96107 -20.61263 -20.32194 -19.37113 -17.58275 -17.31319 -17.16489 -16.61203 -15.89345 -15.69657 -15.38581 -15.38161 -14.91473 -14.54915 -14.29434 -13.89833 -13.74458 -13.69595 -13.62527 -13.04781 -12.70503 -12.60433 -12.34829 -12.26466 -11.90979 -11.80785 -11.64285 -11.56238 -11.53243 -11.43619 -11.20597 -11.12605 -11.09470 -11.01538 -11.00499 -10.76171 -10.51381 -10.43033 -9.85643 -9.68011 -9.52536 -9.41864 -9.29125 -9.18680 -7.37475 -7.34715 -6.77472 -4.39255 2.42400 2.47169 2.78180 2.88509 2.98939 3.05441 3.09681 3.24527 3.54333 3.91354 4.13591 4.24078 4.47338 4.55822 4.62831 4.86230 4.97373 5.01160 5.08335 5.13722 5.16765 5.24482 5.26901 5.40328 5.52201 5.59536 5.65587 5.67102 5.76571 5.78808 5.86711 5.94222 5.98059 6.03077 6.09048 6.26539 6.29543 6.41928 6.48354 6.71704 6.89889 7.04807 7.23861 7.25663 7.37700 7.60173 7.87565 8.01322 8.04509 8.09138 8.26723 8.41662 8.60700 8.86649 8.96293 10.16453 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014752 B = 0.002520 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.578225 B =11109.223958 C =12446.935159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.068 3.932 3 H 0.107 0.893 4 O -0.338 6.338 5 C 0.460 3.540 6 O -0.492 6.492 7 C -0.040 4.040 8 C -0.195 4.195 9 C -0.076 4.076 10 C -0.240 4.240 11 C -0.104 4.104 12 C -0.159 4.159 13 C 0.131 3.869 14 C -0.457 4.457 15 H 0.074 0.926 16 C 0.078 3.922 17 N -0.792 5.792 18 Si 0.903 3.097 19 H -0.268 1.268 20 H -0.275 1.275 21 H -0.261 1.261 22 C 0.520 3.480 23 O -0.515 6.515 24 N -0.725 5.725 25 C 0.141 3.859 26 C -0.137 4.137 27 C -0.124 4.124 28 C -0.124 4.124 29 C -0.131 4.131 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.109 0.891 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.118 0.882 39 H 0.281 0.719 40 H 0.400 0.600 41 H 0.092 0.908 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.068 0.932 46 H 0.067 0.933 47 H 0.067 0.933 48 H 0.075 0.925 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.389 -0.939 -21.309 21.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.008 3.992 3 H 0.124 0.876 4 O -0.256 6.256 5 C 0.303 3.697 6 O -0.377 6.377 7 C -0.077 4.077 8 C -0.196 4.196 9 C -0.094 4.094 10 C -0.259 4.259 11 C -0.122 4.122 12 C -0.178 4.178 13 C 0.128 3.872 14 C -0.486 4.486 15 H 0.092 0.908 16 C -0.140 4.140 17 N -0.417 5.417 18 Si 0.727 3.273 19 H -0.194 1.194 20 H -0.200 1.200 21 H -0.185 1.185 22 C 0.305 3.695 23 O -0.389 6.389 24 N -0.379 5.379 25 C 0.037 3.963 26 C -0.176 4.176 27 C -0.162 4.162 28 C -0.162 4.162 29 C -0.169 4.169 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.127 0.873 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.136 0.864 39 H 0.092 0.908 40 H 0.235 0.765 41 H 0.110 0.890 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.086 0.914 48 H 0.094 0.906 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.667 -1.352 -20.987 21.041 hybrid contribution -1.125 0.456 -0.114 1.219 sum -0.458 -0.896 -21.100 21.124 Atomic orbital electron populations 1.22140 0.92130 1.03886 1.04031 1.22270 0.95880 0.97619 0.83384 0.87562 1.86710 1.77591 1.41983 1.19267 1.24672 0.74034 0.86476 0.84533 1.90625 1.47011 1.16730 1.83340 1.19993 1.02022 0.98772 0.86948 1.19056 0.94252 1.03528 1.02813 1.20336 0.95537 0.96415 0.97153 1.20318 0.97698 1.05098 1.02830 1.20701 0.94082 0.99125 0.98326 1.21303 0.96454 0.98299 1.01720 1.17347 0.91237 0.88991 0.89617 1.19470 0.98342 1.33487 0.97343 0.90817 1.25887 1.00857 0.92862 0.94429 1.69814 1.36310 1.35734 0.99814 0.86391 0.81921 0.79337 0.79629 1.19359 1.20040 1.18510 1.20340 0.79527 0.85383 0.84246 1.90724 1.38907 1.22914 1.86361 1.46091 1.58694 1.27926 1.05220 1.21660 0.93135 0.98074 0.83445 1.22830 0.96611 1.02248 0.95876 1.22488 0.97059 1.01333 0.95337 1.22361 0.94901 1.00246 0.98703 1.22442 0.98102 1.01377 0.95016 0.90980 0.90025 0.90769 0.87287 0.89163 0.89523 0.89505 0.89458 0.86404 0.90837 0.76467 0.88981 0.91031 0.90905 0.91247 0.91293 0.91388 0.91408 0.90611 0.90942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.50 37.16 0.35 -1.68 16 2 C 0.07 0.99 2.97 -27.88 -0.08 0.91 16 3 H 0.11 1.52 7.16 -51.93 -0.37 1.15 16 4 O -0.34 -6.25 9.42 -45.88 -0.43 -6.69 16 5 C 0.46 9.45 7.54 36.00 0.27 9.72 16 6 O -0.49 -11.22 15.25 -18.75 -0.29 -11.50 16 7 C -0.04 -0.82 5.29 -29.03 -0.15 -0.98 16 8 C -0.19 -4.69 4.43 -103.91 -0.46 -5.15 16 9 C -0.08 -1.75 9.66 -39.66 -0.38 -2.13 16 10 C -0.24 -5.52 10.05 -39.29 -0.39 -5.92 16 11 C -0.10 -2.49 10.02 -39.66 -0.40 -2.89 16 12 C -0.16 -4.17 8.69 -38.87 -0.34 -4.51 16 13 C 0.13 3.45 5.56 -106.83 -0.59 2.85 16 14 C -0.46 -11.86 8.14 -37.74 -0.31 -12.16 16 15 H 0.07 1.86 6.67 -52.49 -0.35 1.51 16 16 C 0.08 1.92 5.16 -17.34 -0.09 1.83 16 17 N -0.79 -20.16 10.95 55.55 0.61 -19.55 16 18 Si 0.90 18.57 29.59 -169.99 -5.03 13.54 16 19 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 20 H -0.28 -5.54 7.11 56.52 0.40 -5.13 16 21 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 22 C 0.52 7.17 7.18 -10.99 -0.08 7.10 16 23 O -0.52 -9.12 16.18 -14.05 -0.23 -9.35 16 24 N -0.72 -6.89 5.00 -52.72 -0.26 -7.16 16 25 C 0.14 1.22 3.23 -66.81 -0.22 1.01 16 26 C -0.14 -1.16 6.54 -25.03 -0.16 -1.33 16 27 C -0.12 -0.78 6.91 -24.70 -0.17 -0.95 16 28 C -0.12 -0.67 6.83 -25.07 -0.17 -0.84 16 29 C -0.13 -0.78 6.57 -25.62 -0.17 -0.95 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.07 0.64 7.92 -51.93 -0.41 0.23 16 33 H 0.11 2.22 7.08 -51.93 -0.37 1.85 16 34 H 0.09 1.62 8.05 -51.93 -0.42 1.20 16 35 H 0.09 1.75 8.06 -52.48 -0.42 1.33 16 36 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 37 H 0.09 1.87 8.06 -52.49 -0.42 1.44 16 38 H 0.12 3.17 6.20 -52.49 -0.33 2.85 16 39 H 0.28 6.51 8.30 -40.82 -0.34 6.18 16 40 H 0.40 2.72 8.09 -40.82 -0.33 2.39 16 41 H 0.09 0.96 7.59 -51.92 -0.39 0.57 16 42 H 0.07 0.63 8.05 -51.93 -0.42 0.22 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.07 0.35 8.14 -51.92 -0.42 -0.07 16 48 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 49 H 0.07 0.37 7.61 -51.93 -0.40 -0.02 16 LS Contribution 404.02 15.07 6.09 6.09 Total: -1.00 -31.63 404.02 -10.65 -42.28 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -7.57 Total: 8.41 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: -3.55 Total: -16.07 kcal Atomic # 7 Polarization: -27.05 SS G_CDS: 0.34 Total: -26.71 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -0.95 Total: -27.54 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.63 -10.65 -42.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777165371.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.940 kcal (2) G-P(sol) polarization free energy of solvation -31.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds