Wall clock time and date at job start Wed Apr 1 2020 03:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47285 * 2 1 4 4 O 1.45206 * 109.46738 * 119.99720 * 2 1 3 5 5 C 1.34227 * 117.00081 * 269.99814 * 4 2 1 6 6 O 1.20829 * 119.99900 * 0.02562 * 5 4 2 7 7 C 1.50697 * 120.00187 * 180.02562 * 5 4 2 8 8 C 1.50705 * 109.47299 * 180.02562 * 7 5 4 9 9 C 1.37638 * 120.12365 * 264.99972 * 8 7 5 10 10 C 1.38613 * 120.25053 * 179.97438 * 9 8 7 11 11 C 1.38656 * 120.49682 * 0.02562 * 10 9 8 12 12 C 1.37596 * 120.25313 * 0.02562 * 11 10 9 13 13 C 1.40697 * 120.13102 * 84.71956 * 8 7 5 14 14 C 1.41389 * 120.24134 * 0.02562 * 13 8 7 15 15 H 1.07997 * 120.00387 * 333.89778 * 14 13 8 16 16 C 1.39949 * 119.99971 * 153.89696 * 14 13 8 17 17 N 1.30821 * 119.99901 * 343.70863 * 16 14 13 18 18 Si 1.86803 * 119.99995 * 163.70983 * 16 14 13 19 19 H 1.48492 * 109.47031 * 90.00165 * 18 16 14 20 20 H 1.48499 * 109.46862 * 210.00344 * 18 16 14 21 21 H 1.48501 * 109.47089 * 329.99735 * 18 16 14 22 22 C 1.50695 * 109.47393 * 239.99272 * 2 1 3 23 23 O 1.21276 * 120.00798 * 245.00431 * 22 2 1 24 24 N 1.34775 * 119.99798 * 65.00504 * 22 2 1 25 25 C 1.46503 * 120.00519 * 180.02562 * 24 22 2 26 26 C 1.54267 * 110.03235 * 272.90711 * 25 24 22 27 27 C 1.54959 * 104.16011 * 217.13074 * 26 25 24 28 28 C 1.54893 * 102.77746 * 37.88727 * 27 26 25 29 29 C 1.53871 * 110.03807 * 155.68549 * 25 24 22 30 30 H 1.09003 * 109.47112 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47162 * 300.00602 * 1 2 3 32 32 H 1.08996 * 109.46689 * 60.00329 * 1 2 3 33 33 H 1.09006 * 109.46893 * 299.99860 * 7 5 4 34 34 H 1.08993 * 109.47365 * 59.99864 * 7 5 4 35 35 H 1.08005 * 119.87724 * 359.97438 * 9 8 7 36 36 H 1.07998 * 119.75518 * 179.97438 * 10 9 8 37 37 H 1.08000 * 119.87594 * 179.97438 * 11 10 9 38 38 H 1.07998 * 120.13077 * 179.97438 * 12 11 10 39 39 H 0.97003 * 120.00058 * 179.97438 * 17 16 14 40 40 H 0.97001 * 119.99954 * 359.97438 * 24 22 2 41 41 H 1.09008 * 110.01124 * 34.29409 * 25 24 22 42 42 H 1.09002 * 110.48141 * 335.78002 * 26 25 24 43 43 H 1.09000 * 110.48414 * 98.41818 * 26 25 24 44 44 H 1.08994 * 110.72466 * 279.57356 * 27 26 25 45 45 H 1.08999 * 110.92121 * 156.29059 * 27 26 25 46 46 H 1.08992 * 110.49087 * 203.40172 * 28 27 26 47 47 H 1.09011 * 110.59527 * 80.81493 * 28 27 26 48 48 H 1.08993 * 110.03784 * 238.57384 * 29 25 24 49 49 H 1.09002 * 110.02976 * 0.02562 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0139 -0.6845 1.1857 5 6 2.2171 0.0641 2.2812 6 8 1.9973 1.2518 2.2506 7 6 2.7192 -0.5769 3.5493 8 6 2.8609 0.4732 4.6209 9 6 4.0771 1.0806 4.8363 10 6 4.2103 2.0471 5.8209 11 6 3.1229 2.4128 6.5996 12 6 1.8978 1.8182 6.4026 13 6 1.7492 0.8406 5.4011 14 6 0.4937 0.2273 5.1852 15 1 0.2519 -0.1813 4.2152 16 6 -0.4358 0.1496 6.2286 17 7 -0.0503 0.3429 7.4637 18 14 -2.2268 -0.2303 5.8576 19 1 -2.4384 -1.6997 5.8916 20 1 -3.0914 0.4181 6.8760 21 1 -2.5741 0.2889 4.5104 22 6 2.0324 -0.7105 -1.2303 23 8 2.6530 -1.7468 -1.1214 24 7 1.7921 -0.1944 -2.4519 25 6 2.2799 -0.8853 -3.6481 26 6 3.7223 -0.4392 -3.9647 27 6 3.7716 -0.3861 -5.5126 28 6 2.3727 0.1677 -5.8811 29 6 1.4222 -0.5001 -4.8661 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 2.0102 -1.3371 3.8775 34 1 3.6882 -1.0399 3.3634 35 1 4.9309 0.8031 4.2359 36 1 5.1684 2.5182 5.9834 37 1 3.2381 3.1668 7.3643 38 1 1.0523 2.1043 7.0105 39 1 -0.6947 0.2894 8.1868 40 1 1.2954 0.6343 -2.5391 41 1 2.2478 -1.9641 -3.4949 42 1 3.9179 0.5467 -3.5429 43 1 4.4389 -1.1670 -3.5841 44 1 3.9139 -1.3835 -5.9284 45 1 4.5564 0.2888 -5.8542 46 1 2.1055 -0.1173 -6.8986 47 1 2.3483 1.2519 -5.7706 48 1 0.9745 -1.3919 -5.3046 49 1 0.6431 0.2013 -4.5673 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777165371.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:14 Heat of formation + Delta-G solvation = -137.977758 kcal Electronic energy + Delta-G solvation = -30006.389052 eV Core-core repulsion = 25896.577835 eV Total energy + Delta-G solvation = -4109.811217 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.89281 -40.88100 -39.46401 -38.69896 -37.34949 -35.53194 -34.99731 -33.71863 -32.70079 -31.38170 -29.66366 -28.88500 -28.54505 -27.01441 -25.65504 -23.10243 -22.82141 -21.73736 -21.42900 -21.36101 -21.05762 -19.12717 -18.84623 -18.55556 -17.60902 -17.43729 -17.03866 -16.65778 -16.31000 -16.24902 -16.07918 -15.55258 -15.43046 -15.15684 -14.86214 -14.41361 -14.30091 -14.26697 -13.98970 -13.60709 -13.46368 -13.37983 -13.09088 -12.95608 -12.88589 -12.76309 -12.68831 -12.54402 -12.50531 -12.13457 -12.02641 -11.96930 -11.91151 -11.78577 -11.48326 -11.46913 -11.36515 -11.26963 -11.03772 -10.87707 -10.18177 -9.26071 -9.23985 -8.62259 -6.33294 0.87036 1.07224 1.26428 1.36496 1.38354 1.45868 1.47760 1.53905 2.19529 2.31405 2.76432 3.44708 3.61648 3.67135 3.69791 3.76164 3.84897 3.98813 4.01566 4.26377 4.32666 4.43645 4.50480 4.52999 4.54876 4.59499 4.60818 4.61571 4.69108 4.75169 4.76946 4.88343 4.97563 5.02130 5.03657 5.11324 5.16807 5.22641 5.27183 5.32520 5.35998 5.45348 5.50692 5.53013 5.73534 6.00471 6.12186 6.19151 6.35565 6.38188 6.69268 6.84485 6.95363 7.06083 7.06398 8.34080 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014752 B = 0.002520 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.578225 B =11109.223958 C =12446.935159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.059 3.941 3 H 0.111 0.889 4 O -0.346 6.346 5 C 0.469 3.531 6 O -0.521 6.521 7 C -0.042 4.042 8 C -0.202 4.202 9 C -0.085 4.085 10 C -0.242 4.242 11 C -0.111 4.111 12 C -0.190 4.190 13 C 0.100 3.900 14 C -0.483 4.483 15 H 0.070 0.930 16 C 0.038 3.962 17 N -0.822 5.822 18 Si 0.970 3.030 19 H -0.259 1.259 20 H -0.266 1.266 21 H -0.262 1.262 22 C 0.524 3.476 23 O -0.561 6.561 24 N -0.702 5.702 25 C 0.136 3.864 26 C -0.139 4.139 27 C -0.121 4.121 28 C -0.120 4.120 29 C -0.124 4.124 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.117 0.883 33 H 0.106 0.894 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.109 0.891 38 H 0.100 0.900 39 H 0.287 0.713 40 H 0.417 0.583 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.051 0.949 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.081 0.919 47 H 0.074 0.926 48 H 0.083 0.917 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.087 -0.597 -23.720 23.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.001 3.999 3 H 0.129 0.871 4 O -0.263 6.263 5 C 0.313 3.687 6 O -0.408 6.408 7 C -0.079 4.079 8 C -0.204 4.204 9 C -0.103 4.103 10 C -0.261 4.261 11 C -0.129 4.129 12 C -0.210 4.210 13 C 0.097 3.903 14 C -0.512 4.512 15 H 0.088 0.912 16 C -0.178 4.178 17 N -0.448 5.448 18 Si 0.791 3.209 19 H -0.183 1.183 20 H -0.191 1.191 21 H -0.186 1.186 22 C 0.309 3.691 23 O -0.438 6.438 24 N -0.357 5.357 25 C 0.032 3.968 26 C -0.178 4.178 27 C -0.159 4.159 28 C -0.157 4.157 29 C -0.162 4.162 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.135 0.865 33 H 0.124 0.876 34 H 0.137 0.863 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.127 0.873 38 H 0.118 0.882 39 H 0.098 0.902 40 H 0.255 0.745 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.070 0.930 44 H 0.090 0.910 45 H 0.094 0.906 46 H 0.100 0.900 47 H 0.092 0.908 48 H 0.102 0.898 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.186 -0.989 -23.438 23.460 hybrid contribution -0.857 0.370 0.558 1.088 sum -0.672 -0.619 -22.880 22.899 Atomic orbital electron populations 1.22155 0.90242 1.04174 1.05078 1.22646 0.97436 0.97557 0.82274 0.87148 1.86656 1.77465 1.42214 1.19961 1.24423 0.73388 0.85925 0.84969 1.90605 1.48397 1.17840 1.83977 1.19990 1.03563 0.97864 0.86475 1.19415 0.94101 1.03832 1.03006 1.20747 0.96139 0.96082 0.97358 1.20725 0.98577 1.04747 1.02048 1.20987 0.93671 0.99310 0.98959 1.21315 0.97064 0.99798 1.02788 1.17716 0.92419 0.89590 0.90529 1.19617 0.99269 1.34721 0.97634 0.91169 1.26673 1.04732 0.92387 0.93972 1.69868 1.37844 1.36414 1.00651 0.85380 0.76644 0.79543 0.79330 1.18339 1.19066 1.18629 1.20208 0.79083 0.84739 0.85031 1.90710 1.41227 1.24909 1.86996 1.45975 1.57460 1.28074 1.04147 1.21809 0.94087 0.96959 0.83911 1.22809 0.95929 1.01266 0.97779 1.22481 0.98216 1.01867 0.93288 1.22363 0.93692 1.00511 0.99174 1.22426 0.98032 1.02197 0.93576 0.91048 0.92148 0.86497 0.87556 0.86345 0.86559 0.86444 0.87341 0.88169 0.90188 0.74512 0.90997 0.91397 0.93014 0.90992 0.90608 0.89995 0.90758 0.89831 0.89436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.74 9.50 71.98 0.68 -3.06 16 2 C 0.06 1.70 2.97 29.85 0.09 1.79 16 3 H 0.11 3.09 7.16 -2.39 -0.02 3.07 16 4 O -0.35 -12.83 9.42 -45.05 -0.42 -13.25 16 5 C 0.47 19.36 7.54 71.24 0.54 19.89 16 6 O -0.52 -23.98 15.25 21.95 0.33 -23.64 16 7 C -0.04 -1.72 5.29 29.10 0.15 -1.57 16 8 C -0.20 -9.77 4.43 -19.40 -0.09 -9.85 16 9 C -0.09 -3.82 9.66 22.22 0.21 -3.61 16 10 C -0.24 -10.81 10.05 22.46 0.23 -10.58 16 11 C -0.11 -5.33 10.02 22.22 0.22 -5.11 16 12 C -0.19 -10.31 8.69 22.73 0.20 -10.11 16 13 C 0.10 5.41 5.56 -21.29 -0.12 5.29 16 14 C -0.48 -25.82 8.14 23.46 0.19 -25.63 16 15 H 0.07 3.66 6.67 -2.91 -0.02 3.64 16 16 C 0.04 1.90 5.16 85.26 0.44 2.34 16 17 N -0.82 -43.02 10.95 21.83 0.24 -42.78 16 18 Si 0.97 38.49 29.59 68.60 2.03 40.52 16 19 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 20 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 21 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 22 C 0.52 14.12 7.18 87.66 0.63 14.75 16 23 O -0.56 -20.05 16.18 15.73 0.25 -19.80 16 24 N -0.70 -12.20 5.00 -439.10 -2.20 -14.39 16 25 C 0.14 2.18 3.23 45.71 0.15 2.33 16 26 C -0.14 -2.26 6.54 31.69 0.21 -2.05 16 27 C -0.12 -1.29 6.91 31.91 0.22 -1.07 16 28 C -0.12 -0.93 6.83 31.67 0.22 -0.71 16 29 C -0.12 -1.13 6.57 31.32 0.21 -0.92 16 30 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.12 1.68 7.92 -2.39 -0.02 1.66 16 33 H 0.11 4.43 7.08 -2.38 -0.02 4.41 16 34 H 0.12 4.12 8.05 -2.39 -0.02 4.10 16 35 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 36 H 0.12 4.46 8.06 -2.91 -0.02 4.43 16 37 H 0.11 4.59 8.06 -2.91 -0.02 4.57 16 38 H 0.10 5.66 6.20 -2.91 -0.02 5.64 16 39 H 0.29 13.63 8.30 -92.71 -0.77 12.86 16 40 H 0.42 4.50 8.09 -92.71 -0.75 3.75 16 41 H 0.07 1.49 7.59 -2.38 -0.02 1.47 16 42 H 0.07 1.14 8.05 -2.39 -0.02 1.12 16 43 H 0.05 1.04 8.14 -2.39 -0.02 1.03 16 44 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 47 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 48 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 49 H 0.09 0.56 7.61 -2.39 -0.02 0.55 16 Total: -1.00 -71.05 404.02 4.82 -66.23 By element: Atomic # 1 Polarization: 34.80 SS G_CDS: 0.21 Total: 35.01 kcal Atomic # 6 Polarization: -32.26 SS G_CDS: 4.38 Total: -27.88 kcal Atomic # 7 Polarization: -55.21 SS G_CDS: -1.96 Total: -57.17 kcal Atomic # 8 Polarization: -56.86 SS G_CDS: 0.17 Total: -56.69 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 2.03 Total: 40.52 kcal Total: -71.05 4.82 -66.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777165371.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.752 kcal (2) G-P(sol) polarization free energy of solvation -71.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds