Wall clock time and date at job start Wed Apr 1 2020 03:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.47095 * 2 1 4 4 O 1.45198 * 109.47111 * 120.00240 * 2 1 3 5 5 C 1.34224 * 116.99978 * 269.99888 * 4 2 1 6 6 O 1.20831 * 120.00175 * 0.02562 * 5 4 2 7 7 C 1.50699 * 120.00230 * 179.97438 * 5 4 2 8 8 C 1.50695 * 109.47456 * 179.97438 * 7 5 4 9 9 C 1.37636 * 120.13234 * 265.00383 * 8 7 5 10 10 C 1.38611 * 120.25061 * 180.29534 * 9 8 7 11 11 C 1.38664 * 120.50100 * 359.44846 * 10 9 8 12 12 C 1.37594 * 120.24287 * 0.55015 * 11 10 9 13 13 C 1.40705 * 120.12396 * 85.02748 * 8 7 5 14 14 C 1.41387 * 120.24582 * 359.95576 * 13 8 7 15 15 H 1.08006 * 119.99793 * 334.08529 * 14 13 8 16 16 C 1.39940 * 120.00234 * 154.09032 * 14 13 8 17 17 N 1.30822 * 119.99912 * 343.61546 * 16 14 13 18 18 Si 1.86803 * 120.00192 * 163.62649 * 16 14 13 19 19 H 1.48494 * 109.47516 * 89.99468 * 18 16 14 20 20 H 1.48504 * 109.46852 * 209.99866 * 18 16 14 21 21 H 1.48504 * 109.47021 * 329.99095 * 18 16 14 22 22 C 1.50699 * 109.46947 * 239.99933 * 2 1 3 23 23 O 1.21279 * 120.00218 * 245.00166 * 22 2 1 24 24 N 1.34778 * 120.00123 * 65.00200 * 22 2 1 25 25 C 1.46925 * 120.62809 * 359.71794 * 24 22 2 26 26 C 1.53625 * 108.54665 * 126.36855 * 25 24 22 27 27 C 1.53043 * 109.24139 * 54.85113 * 26 25 24 28 28 C 1.53033 * 109.53946 * 298.51821 * 27 26 25 29 29 C 1.46929 * 120.63409 * 179.97438 * 24 22 2 30 30 H 1.09006 * 109.47241 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46950 * 299.99776 * 1 2 3 32 32 H 1.08997 * 109.47373 * 60.00064 * 1 2 3 33 33 H 1.09005 * 109.47282 * 60.00292 * 7 5 4 34 34 H 1.08998 * 109.47325 * 300.00590 * 7 5 4 35 35 H 1.08004 * 119.87777 * 0.02562 * 9 8 7 36 36 H 1.07996 * 119.75145 * 179.69894 * 10 9 8 37 37 H 1.07998 * 119.87531 * 180.29896 * 11 10 9 38 38 H 1.08002 * 120.12524 * 179.74850 * 12 11 10 39 39 H 0.97001 * 120.00439 * 179.97438 * 17 16 14 40 40 H 1.08996 * 109.59011 * 246.20458 * 25 24 22 41 41 H 1.09006 * 109.58831 * 6.62490 * 25 24 22 42 42 H 1.09007 * 109.63284 * 294.87123 * 26 25 24 43 43 H 1.08993 * 109.43751 * 174.72295 * 26 25 24 44 44 H 1.08995 * 109.46401 * 178.49097 * 27 26 25 45 45 H 1.09008 * 109.45467 * 58.53773 * 27 26 25 46 46 H 1.08998 * 109.49861 * 301.40736 * 28 27 26 47 47 H 1.09004 * 109.49724 * 181.31439 * 28 27 26 48 48 H 1.08999 * 109.58108 * 353.37149 * 29 24 22 49 49 H 1.08992 * 109.58598 * 113.79678 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2171 0.0639 2.2811 6 8 1.9974 1.2517 2.2506 7 6 2.7182 -0.5773 3.5494 8 6 2.8614 0.4728 4.6207 9 6 4.0783 1.0787 4.8360 10 6 4.2142 2.0406 5.8248 11 6 3.1260 2.4118 6.5999 12 6 1.9000 1.8194 6.4021 13 6 1.7515 0.8374 5.4050 14 6 0.4964 0.2222 5.1925 15 1 0.2534 -0.1884 4.2236 16 6 -0.4310 0.1452 6.2377 17 7 -0.0432 0.3395 7.4719 18 14 -2.2227 -0.2352 5.8705 19 1 -2.4341 -1.7046 5.9060 20 1 -3.0855 0.4139 6.8901 21 1 -2.5727 0.2829 4.5235 22 6 2.0323 -0.7104 -1.2305 23 8 2.6529 -1.7467 -1.1215 24 7 1.7919 -0.1942 -2.4520 25 6 1.0362 1.0571 -2.6004 26 6 1.8682 2.0329 -3.4464 27 6 2.2392 1.3623 -4.7710 28 6 3.0885 0.1194 -4.4952 29 6 2.2756 -0.8749 -3.6609 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 3.6872 -1.0410 3.3640 34 1 2.0088 -1.3371 3.8773 35 1 4.9316 0.8006 4.2352 36 1 5.1740 2.5073 5.9901 37 1 3.2422 3.1658 7.3643 38 1 1.0546 2.1071 7.0096 39 1 -0.6861 0.2866 8.1964 40 1 0.0879 0.8545 -3.0981 41 1 0.8501 1.4903 -1.6176 42 1 2.7770 2.3017 -2.9077 43 1 1.2831 2.9309 -3.6446 44 1 2.8069 2.0610 -5.3854 45 1 1.3303 1.0715 -5.2978 46 1 3.9857 0.4062 -3.9468 47 1 3.3719 -0.3445 -5.4400 48 1 2.9075 -1.7168 -3.3780 49 1 1.4265 -1.2322 -4.2435 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784564378.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:31 Heat of formation + Delta-G solvation = -109.282622 kcal Electronic energy + Delta-G solvation = -30660.499440 eV Core-core repulsion = 26551.932537 eV Total energy + Delta-G solvation = -4108.566903 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.78374 -39.70367 -37.78662 -37.39115 -35.85852 -33.66752 -33.66098 -32.19025 -31.71706 -30.72077 -29.50092 -27.12448 -26.22643 -25.13656 -24.11804 -23.52818 -21.61928 -20.97461 -20.62179 -19.38809 -19.34974 -17.63378 -17.20607 -16.98718 -16.40851 -15.91505 -15.50978 -15.25245 -15.10085 -14.86907 -14.52063 -14.30287 -14.21462 -13.83270 -13.67770 -13.61116 -13.29201 -13.13844 -12.62970 -12.53156 -12.48234 -12.22574 -11.81210 -11.65406 -11.64098 -11.54956 -11.30488 -11.19791 -11.10702 -11.00868 -11.00179 -10.93754 -10.76350 -10.48452 -10.42983 -9.84922 -9.65315 -9.52370 -9.41916 -9.18785 -8.92453 -7.37566 -7.34823 -6.77715 -4.39329 2.33874 2.44270 2.75911 2.87900 2.94893 3.05396 3.09631 3.24491 3.43612 3.91319 4.19193 4.36701 4.48237 4.54814 4.62672 4.70448 4.84305 4.90008 4.93408 5.08546 5.12904 5.23469 5.36653 5.42520 5.47474 5.55302 5.59532 5.66767 5.69121 5.71581 5.76862 5.94508 5.97716 6.02424 6.08801 6.23944 6.26672 6.41943 6.48262 6.71621 6.89431 7.04760 7.08869 7.25393 7.37524 7.60027 7.87524 7.98022 8.01208 8.09039 8.26630 8.41295 8.60547 8.86552 8.96169 10.16388 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013568 B = 0.002878 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.239381 B = 9725.199686 C =10774.089856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.069 3.931 3 H 0.106 0.894 4 O -0.338 6.338 5 C 0.460 3.540 6 O -0.492 6.492 7 C -0.040 4.040 8 C -0.194 4.194 9 C -0.076 4.076 10 C -0.240 4.240 11 C -0.104 4.104 12 C -0.159 4.159 13 C 0.131 3.869 14 C -0.457 4.457 15 H 0.074 0.926 16 C 0.078 3.922 17 N -0.792 5.792 18 Si 0.903 3.097 19 H -0.268 1.268 20 H -0.275 1.275 21 H -0.261 1.261 22 C 0.523 3.477 23 O -0.517 6.517 24 N -0.612 5.612 25 C 0.096 3.904 26 C -0.138 4.138 27 C -0.120 4.120 28 C -0.136 4.136 29 C 0.112 3.888 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.109 0.891 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.118 0.882 39 H 0.281 0.719 40 H 0.074 0.926 41 H 0.093 0.907 42 H 0.070 0.930 43 H 0.078 0.922 44 H 0.066 0.934 45 H 0.064 0.936 46 H 0.067 0.933 47 H 0.075 0.925 48 H 0.093 0.907 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.369 0.713 -20.250 20.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.010 3.990 3 H 0.124 0.876 4 O -0.255 6.255 5 C 0.303 3.697 6 O -0.377 6.377 7 C -0.078 4.078 8 C -0.196 4.196 9 C -0.095 4.095 10 C -0.259 4.259 11 C -0.122 4.122 12 C -0.178 4.178 13 C 0.128 3.872 14 C -0.487 4.487 15 H 0.092 0.908 16 C -0.140 4.140 17 N -0.417 5.417 18 Si 0.727 3.273 19 H -0.194 1.194 20 H -0.200 1.200 21 H -0.185 1.185 22 C 0.310 3.690 23 O -0.391 6.391 24 N -0.348 5.348 25 C -0.026 4.026 26 C -0.176 4.176 27 C -0.157 4.157 28 C -0.174 4.174 29 C -0.010 4.010 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.108 0.892 34 H 0.127 0.873 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.136 0.864 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.111 0.889 42 H 0.088 0.912 43 H 0.096 0.904 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.086 0.914 47 H 0.094 0.906 48 H 0.112 0.888 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.199 0.499 -19.950 19.957 hybrid contribution -0.903 0.122 -0.148 0.923 sum -1.101 0.622 -20.098 20.138 Atomic orbital electron populations 1.22338 0.92180 1.04176 1.04350 1.22232 0.95899 0.97510 0.83330 0.87597 1.86706 1.77571 1.41993 1.19260 1.24679 0.74019 0.86481 0.84523 1.90622 1.47032 1.16725 1.83352 1.19997 1.02044 0.98777 0.86934 1.19045 0.94278 1.03529 1.02748 1.20336 0.95521 0.96482 0.97114 1.20315 0.97631 1.05205 1.02779 1.20702 0.94052 0.99123 0.98345 1.21293 0.96451 0.98254 1.01776 1.17345 0.91228 0.88989 0.89601 1.19474 0.98413 1.33431 0.97373 0.90806 1.25882 1.00851 0.92849 0.94424 1.69812 1.36347 1.35724 0.99790 0.86396 0.81933 0.79348 0.79632 1.19353 1.20026 1.18501 1.20321 0.79482 0.85274 0.83967 1.90713 1.39432 1.23066 1.85921 1.47986 1.56171 1.25157 1.05479 1.22133 0.94600 0.84061 1.01836 1.22028 1.00937 0.98179 0.96471 1.21518 1.00095 0.97093 0.97029 1.21922 0.98980 0.96339 1.00144 1.21588 0.98648 0.95839 0.84892 0.90900 0.89941 0.90170 0.89162 0.87262 0.89527 0.89510 0.89456 0.86443 0.90832 0.90741 0.88864 0.91171 0.90379 0.91576 0.91686 0.91386 0.90627 0.88827 0.91404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 9.12 37.16 0.34 -1.87 16 2 C 0.07 1.05 2.14 -27.88 -0.06 0.99 16 3 H 0.11 1.58 6.46 -51.93 -0.34 1.25 16 4 O -0.34 -6.35 9.42 -45.87 -0.43 -6.78 16 5 C 0.46 9.50 7.56 36.01 0.27 9.77 16 6 O -0.49 -11.23 15.25 -18.75 -0.29 -11.52 16 7 C -0.04 -0.83 5.29 -29.04 -0.15 -0.98 16 8 C -0.19 -4.67 4.43 -103.91 -0.46 -5.13 16 9 C -0.08 -1.75 9.66 -39.66 -0.38 -2.13 16 10 C -0.24 -5.52 10.05 -39.29 -0.39 -5.91 16 11 C -0.10 -2.49 10.02 -39.66 -0.40 -2.89 16 12 C -0.16 -4.16 8.68 -38.87 -0.34 -4.50 16 13 C 0.13 3.45 5.56 -106.83 -0.59 2.86 16 14 C -0.46 -11.87 8.14 -37.75 -0.31 -12.18 16 15 H 0.07 1.86 6.68 -52.48 -0.35 1.51 16 16 C 0.08 1.93 5.16 -17.34 -0.09 1.84 16 17 N -0.79 -20.16 10.97 55.55 0.61 -19.55 16 18 Si 0.90 18.55 29.59 -169.99 -5.03 13.52 16 19 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 20 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 21 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 22 C 0.52 7.66 7.12 -10.99 -0.08 7.59 16 23 O -0.52 -9.46 15.92 -14.05 -0.22 -9.68 16 24 N -0.61 -6.55 2.97 -172.53 -0.51 -7.06 16 25 C 0.10 0.76 5.00 -3.49 -0.02 0.74 16 26 C -0.14 -0.93 6.10 -26.38 -0.16 -1.09 16 27 C -0.12 -0.72 5.88 -26.69 -0.16 -0.87 16 28 C -0.14 -0.96 6.08 -26.63 -0.16 -1.12 16 29 C 0.11 1.01 6.43 -3.73 -0.02 0.99 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.08 0.75 5.39 -51.93 -0.28 0.47 16 33 H 0.09 1.62 8.05 -51.93 -0.42 1.20 16 34 H 0.11 2.23 7.06 -51.93 -0.37 1.87 16 35 H 0.09 1.75 8.06 -52.48 -0.42 1.33 16 36 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.09 1.87 8.06 -52.49 -0.42 1.44 16 38 H 0.12 3.16 6.22 -52.49 -0.33 2.83 16 39 H 0.28 6.51 8.30 -40.82 -0.34 6.18 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.09 0.77 4.65 -51.93 -0.24 0.53 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 46 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.09 1.01 7.01 -51.93 -0.36 0.64 16 49 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 393.28 15.07 5.93 5.93 Total: -1.00 -31.62 393.28 -10.43 -42.04 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -7.31 Total: 7.01 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: -3.17 Total: -13.91 kcal Atomic # 7 Polarization: -26.71 SS G_CDS: 0.10 Total: -26.61 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -0.94 Total: -27.98 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.52 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.62 -10.43 -42.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784564378.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.238 kcal (2) G-P(sol) polarization free energy of solvation -31.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds