Wall clock time and date at job start Wed Apr 1 2020 03:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.47095 * 2 1 4 4 O 1.45198 * 109.47111 * 120.00240 * 2 1 3 5 5 C 1.34224 * 116.99978 * 269.99888 * 4 2 1 6 6 O 1.20831 * 120.00175 * 0.02562 * 5 4 2 7 7 C 1.50699 * 120.00230 * 179.97438 * 5 4 2 8 8 C 1.50695 * 109.47456 * 179.97438 * 7 5 4 9 9 C 1.37636 * 120.13234 * 265.00383 * 8 7 5 10 10 C 1.38611 * 120.25061 * 180.29534 * 9 8 7 11 11 C 1.38664 * 120.50100 * 359.44846 * 10 9 8 12 12 C 1.37594 * 120.24287 * 0.55015 * 11 10 9 13 13 C 1.40705 * 120.12396 * 85.02748 * 8 7 5 14 14 C 1.41387 * 120.24582 * 359.95576 * 13 8 7 15 15 H 1.08006 * 119.99793 * 334.08529 * 14 13 8 16 16 C 1.39940 * 120.00234 * 154.09032 * 14 13 8 17 17 N 1.30822 * 119.99912 * 343.61546 * 16 14 13 18 18 Si 1.86803 * 120.00192 * 163.62649 * 16 14 13 19 19 H 1.48494 * 109.47516 * 89.99468 * 18 16 14 20 20 H 1.48504 * 109.46852 * 209.99866 * 18 16 14 21 21 H 1.48504 * 109.47021 * 329.99095 * 18 16 14 22 22 C 1.50699 * 109.46947 * 239.99933 * 2 1 3 23 23 O 1.21279 * 120.00218 * 245.00166 * 22 2 1 24 24 N 1.34778 * 120.00123 * 65.00200 * 22 2 1 25 25 C 1.46925 * 120.62809 * 359.71794 * 24 22 2 26 26 C 1.53625 * 108.54665 * 126.36855 * 25 24 22 27 27 C 1.53043 * 109.24139 * 54.85113 * 26 25 24 28 28 C 1.53033 * 109.53946 * 298.51821 * 27 26 25 29 29 C 1.46929 * 120.63409 * 179.97438 * 24 22 2 30 30 H 1.09006 * 109.47241 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46950 * 299.99776 * 1 2 3 32 32 H 1.08997 * 109.47373 * 60.00064 * 1 2 3 33 33 H 1.09005 * 109.47282 * 60.00292 * 7 5 4 34 34 H 1.08998 * 109.47325 * 300.00590 * 7 5 4 35 35 H 1.08004 * 119.87777 * 0.02562 * 9 8 7 36 36 H 1.07996 * 119.75145 * 179.69894 * 10 9 8 37 37 H 1.07998 * 119.87531 * 180.29896 * 11 10 9 38 38 H 1.08002 * 120.12524 * 179.74850 * 12 11 10 39 39 H 0.97001 * 120.00439 * 179.97438 * 17 16 14 40 40 H 1.08996 * 109.59011 * 246.20458 * 25 24 22 41 41 H 1.09006 * 109.58831 * 6.62490 * 25 24 22 42 42 H 1.09007 * 109.63284 * 294.87123 * 26 25 24 43 43 H 1.08993 * 109.43751 * 174.72295 * 26 25 24 44 44 H 1.08995 * 109.46401 * 178.49097 * 27 26 25 45 45 H 1.09008 * 109.45467 * 58.53773 * 27 26 25 46 46 H 1.08998 * 109.49861 * 301.40736 * 28 27 26 47 47 H 1.09004 * 109.49724 * 181.31439 * 28 27 26 48 48 H 1.08999 * 109.58108 * 353.37149 * 29 24 22 49 49 H 1.08992 * 109.58598 * 113.79678 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2171 0.0639 2.2811 6 8 1.9974 1.2517 2.2506 7 6 2.7182 -0.5773 3.5494 8 6 2.8614 0.4728 4.6207 9 6 4.0783 1.0787 4.8360 10 6 4.2142 2.0406 5.8248 11 6 3.1260 2.4118 6.5999 12 6 1.9000 1.8194 6.4021 13 6 1.7515 0.8374 5.4050 14 6 0.4964 0.2222 5.1925 15 1 0.2534 -0.1884 4.2236 16 6 -0.4310 0.1452 6.2377 17 7 -0.0432 0.3395 7.4719 18 14 -2.2227 -0.2352 5.8705 19 1 -2.4341 -1.7046 5.9060 20 1 -3.0855 0.4139 6.8901 21 1 -2.5727 0.2829 4.5235 22 6 2.0323 -0.7104 -1.2305 23 8 2.6529 -1.7467 -1.1215 24 7 1.7919 -0.1942 -2.4520 25 6 1.0362 1.0571 -2.6004 26 6 1.8682 2.0329 -3.4464 27 6 2.2392 1.3623 -4.7710 28 6 3.0885 0.1194 -4.4952 29 6 2.2756 -0.8749 -3.6609 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 3.6872 -1.0410 3.3640 34 1 2.0088 -1.3371 3.8773 35 1 4.9316 0.8006 4.2352 36 1 5.1740 2.5073 5.9901 37 1 3.2422 3.1658 7.3643 38 1 1.0546 2.1071 7.0096 39 1 -0.6861 0.2866 8.1964 40 1 0.0879 0.8545 -3.0981 41 1 0.8501 1.4903 -1.6176 42 1 2.7770 2.3017 -2.9077 43 1 1.2831 2.9309 -3.6446 44 1 2.8069 2.0610 -5.3854 45 1 1.3303 1.0715 -5.2978 46 1 3.9857 0.4062 -3.9468 47 1 3.3719 -0.3445 -5.4400 48 1 2.9075 -1.7168 -3.3780 49 1 1.4265 -1.2322 -4.2435 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784564378.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:30 Heat of formation + Delta-G solvation = -124.306962 kcal Electronic energy + Delta-G solvation = -30661.150944 eV Core-core repulsion = 26551.932537 eV Total energy + Delta-G solvation = -4109.218407 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.03019 -41.02324 -39.45263 -38.45755 -37.39760 -35.53347 -34.62076 -33.64236 -32.83286 -31.60329 -31.37519 -28.86021 -27.17756 -26.93223 -25.13299 -24.25935 -22.97476 -22.79414 -21.68353 -21.08859 -20.24725 -19.12981 -18.95114 -18.21869 -17.60612 -17.44651 -17.08338 -16.47112 -16.35580 -16.12481 -15.63696 -15.45977 -15.39314 -15.19783 -14.90087 -14.62626 -14.41353 -14.34291 -14.07410 -13.81094 -13.60900 -13.53185 -13.38162 -13.24033 -12.93747 -12.84034 -12.75898 -12.65546 -12.54593 -12.26660 -12.13316 -11.97215 -11.83846 -11.59122 -11.52676 -11.48196 -11.36609 -11.27222 -11.03896 -10.82438 -9.78270 -9.26408 -9.24140 -8.62570 -6.33521 0.85905 1.06829 1.23524 1.33252 1.36512 1.39713 1.47523 1.53817 2.16491 2.19661 2.76072 3.18013 3.62809 3.71661 3.74468 3.80324 3.92490 3.96804 4.00264 4.07569 4.24296 4.31871 4.32272 4.41550 4.53071 4.54361 4.54973 4.61060 4.68523 4.74390 4.78317 4.88061 4.89296 4.95921 4.99783 5.02856 5.13162 5.16627 5.22158 5.30923 5.34880 5.42758 5.48768 5.50466 5.73208 6.00306 6.11830 6.12761 6.18961 6.37991 6.68861 6.80951 6.92625 6.95182 7.06114 8.33974 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013568 B = 0.002878 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.239381 B = 9725.199686 C =10774.089856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.062 3.938 3 H 0.108 0.892 4 O -0.346 6.346 5 C 0.469 3.531 6 O -0.520 6.520 7 C -0.042 4.042 8 C -0.201 4.201 9 C -0.086 4.086 10 C -0.241 4.241 11 C -0.111 4.111 12 C -0.190 4.190 13 C 0.100 3.900 14 C -0.484 4.484 15 H 0.070 0.930 16 C 0.038 3.962 17 N -0.822 5.822 18 Si 0.970 3.030 19 H -0.259 1.259 20 H -0.266 1.266 21 H -0.262 1.262 22 C 0.521 3.479 23 O -0.564 6.564 24 N -0.600 5.600 25 C 0.087 3.913 26 C -0.137 4.137 27 C -0.116 4.116 28 C -0.131 4.131 29 C 0.107 3.893 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.107 0.893 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.109 0.891 38 H 0.100 0.900 39 H 0.288 0.712 40 H 0.104 0.896 41 H 0.088 0.912 42 H 0.052 0.948 43 H 0.099 0.901 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.049 0.951 47 H 0.095 0.905 48 H 0.070 0.930 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.018 1.113 -22.739 22.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.004 3.996 3 H 0.125 0.875 4 O -0.263 6.263 5 C 0.313 3.687 6 O -0.408 6.408 7 C -0.079 4.079 8 C -0.203 4.203 9 C -0.104 4.104 10 C -0.260 4.260 11 C -0.129 4.129 12 C -0.209 4.209 13 C 0.098 3.902 14 C -0.514 4.514 15 H 0.088 0.912 16 C -0.177 4.177 17 N -0.448 5.448 18 Si 0.791 3.209 19 H -0.183 1.183 20 H -0.190 1.190 21 H -0.186 1.186 22 C 0.308 3.692 23 O -0.442 6.442 24 N -0.335 5.335 25 C -0.034 4.034 26 C -0.175 4.175 27 C -0.154 4.154 28 C -0.169 4.169 29 C -0.014 4.014 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.125 0.875 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.127 0.873 38 H 0.118 0.882 39 H 0.098 0.902 40 H 0.122 0.878 41 H 0.106 0.894 42 H 0.071 0.929 43 H 0.117 0.883 44 H 0.094 0.906 45 H 0.100 0.900 46 H 0.068 0.932 47 H 0.113 0.887 48 H 0.089 0.911 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.848 0.921 -22.479 22.514 hybrid contribution -0.600 0.042 0.520 0.796 sum -1.448 0.963 -21.958 22.027 Atomic orbital electron populations 1.22343 0.90260 1.04435 1.05312 1.22571 0.97473 0.97301 0.82279 0.87487 1.86652 1.77464 1.42239 1.19941 1.24456 0.73388 0.85949 0.84936 1.90601 1.48383 1.17808 1.83968 1.19998 1.03570 0.97905 0.86427 1.19393 0.94138 1.03824 1.02918 1.20746 0.96114 0.96169 0.97345 1.20718 0.98524 1.04812 1.01986 1.20990 0.93633 0.99314 0.98969 1.21306 0.97061 0.99724 1.02832 1.17710 0.92388 0.89582 0.90512 1.19626 0.99361 1.34688 0.97677 0.91173 1.26667 1.04732 0.92358 0.93952 1.69866 1.37895 1.36390 1.00628 0.85387 0.76642 0.79550 0.79361 1.18350 1.19011 1.18603 1.20238 0.79279 0.84782 0.84886 1.90690 1.41837 1.25073 1.86646 1.48094 1.55078 1.25639 1.04639 1.22441 0.95700 0.82952 1.02352 1.22037 1.00292 0.98678 0.96457 1.21526 1.00679 0.96452 0.96722 1.21905 0.98122 0.96609 1.00286 1.21792 0.99526 0.95714 0.84404 0.90947 0.91786 0.86354 0.86369 0.87499 0.86606 0.86448 0.87313 0.88191 0.90169 0.87832 0.89363 0.92939 0.88297 0.90552 0.90011 0.93242 0.88667 0.91129 0.88990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.12 9.12 71.98 0.66 -3.46 16 2 C 0.06 1.88 2.14 29.85 0.06 1.95 16 3 H 0.11 3.21 6.46 -2.39 -0.02 3.20 16 4 O -0.35 -13.19 9.42 -45.02 -0.42 -13.61 16 5 C 0.47 19.60 7.56 71.24 0.54 20.14 16 6 O -0.52 -24.16 15.25 21.95 0.33 -23.82 16 7 C -0.04 -1.74 5.29 29.10 0.15 -1.59 16 8 C -0.20 -9.75 4.43 -19.41 -0.09 -9.84 16 9 C -0.09 -3.85 9.66 22.22 0.21 -3.64 16 10 C -0.24 -10.79 10.05 22.46 0.23 -10.56 16 11 C -0.11 -5.32 10.02 22.22 0.22 -5.10 16 12 C -0.19 -10.28 8.68 22.73 0.20 -10.08 16 13 C 0.10 5.45 5.56 -21.29 -0.12 5.33 16 14 C -0.48 -25.93 8.14 23.46 0.19 -25.74 16 15 H 0.07 3.67 6.68 -2.91 -0.02 3.65 16 16 C 0.04 1.93 5.16 85.26 0.44 2.37 16 17 N -0.82 -43.03 10.97 21.82 0.24 -42.79 16 18 Si 0.97 38.47 29.59 68.60 2.03 40.50 16 19 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 20 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 21 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 22 C 0.52 15.20 7.12 87.66 0.62 15.83 16 23 O -0.56 -21.07 15.92 15.72 0.25 -20.82 16 24 N -0.60 -12.01 2.97 -818.14 -2.43 -14.44 16 25 C 0.09 1.14 5.00 86.51 0.43 1.57 16 26 C -0.14 -1.48 6.10 30.82 0.19 -1.29 16 27 C -0.12 -1.01 5.88 30.62 0.18 -0.83 16 28 C -0.13 -1.58 6.08 30.66 0.19 -1.39 16 29 C 0.11 1.76 6.43 86.35 0.56 2.31 16 30 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 31 H 0.06 1.84 8.14 -2.39 -0.02 1.83 16 32 H 0.12 1.94 5.39 -2.39 -0.01 1.93 16 33 H 0.12 4.16 8.05 -2.38 -0.02 4.14 16 34 H 0.11 4.48 7.06 -2.39 -0.02 4.46 16 35 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 36 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 37 H 0.11 4.60 8.06 -2.91 -0.02 4.58 16 38 H 0.10 5.64 6.22 -2.91 -0.02 5.62 16 39 H 0.29 13.64 8.30 -92.71 -0.77 12.87 16 40 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.09 1.27 4.65 -2.38 -0.01 1.26 16 42 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 43 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.08 0.49 8.14 -2.38 -0.02 0.48 16 46 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.07 1.52 7.01 -2.39 -0.02 1.50 16 49 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -71.33 393.28 5.83 -65.50 By element: Atomic # 1 Polarization: 32.55 SS G_CDS: 0.96 Total: 33.51 kcal Atomic # 6 Polarization: -28.90 SS G_CDS: 4.87 Total: -24.03 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: -2.19 Total: -57.22 kcal Atomic # 8 Polarization: -58.42 SS G_CDS: 0.16 Total: -58.25 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 2.03 Total: 40.50 kcal Total: -71.33 5.83 -65.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784564378.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.803 kcal (2) G-P(sol) polarization free energy of solvation -71.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds