Wall clock time and date at job start Wed Apr 1 2020 03:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.51108 * 2 1 4 4 C 1.53276 * 109.50708 * 120.09849 * 2 1 3 5 5 N 1.47180 * 108.57838 * 172.91283 * 4 2 1 6 6 C 1.34771 * 121.05367 * 128.75177 * 5 4 2 7 7 O 1.21286 * 120.00704 * 180.02562 * 6 5 4 8 8 C 1.50702 * 119.99672 * 0.06405 * 6 5 4 9 9 C 1.50707 * 109.47050 * 180.02562 * 8 6 5 10 10 C 1.37637 * 120.12596 * 264.72644 * 9 8 6 11 11 C 1.38613 * 120.24818 * 179.70049 * 10 9 8 12 12 C 1.38657 * 120.50008 * 0.59866 * 11 10 9 13 13 C 1.37602 * 120.24743 * 359.68048 * 12 11 10 14 14 C 1.40696 * 120.12751 * 85.00136 * 9 8 6 15 15 C 1.41397 * 120.24520 * 0.02628 * 14 9 8 16 16 H 1.07999 * 119.99659 * 334.02598 * 15 14 9 17 17 C 1.39935 * 119.99885 * 154.02965 * 15 14 9 18 18 N 1.30825 * 120.00459 * 343.67811 * 17 15 14 19 19 Si 1.86808 * 119.99885 * 163.68278 * 17 15 14 20 20 H 1.48503 * 109.46737 * 89.99857 * 19 17 15 21 21 H 1.48495 * 109.47049 * 209.99446 * 19 17 15 22 22 H 1.48495 * 109.46982 * 329.99722 * 19 17 15 23 23 C 1.47358 * 117.86213 * 308.81727 * 5 4 2 24 24 C 1.52292 * 108.40936 * 49.04294 * 23 5 4 25 25 C 1.54446 * 110.47908 * 186.28258 * 24 23 5 26 26 C 1.54527 * 102.17194 * 209.17619 * 25 24 23 27 27 O 1.43308 * 107.61204 * 20.64679 * 26 25 24 28 28 C 1.43814 * 110.00685 * 1.60737 * 27 26 25 29 29 O 1.41802 * 111.61153 * 310.08310 * 24 23 5 30 30 H 1.08995 * 109.47671 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47028 * 59.99909 * 1 2 3 32 32 H 1.09000 * 109.47292 * 300.00500 * 1 2 3 33 33 H 1.09006 * 109.62067 * 292.69149 * 4 2 1 34 34 H 1.08993 * 109.62088 * 53.23069 * 4 2 1 35 35 H 1.08993 * 109.47562 * 299.99744 * 8 6 5 36 36 H 1.09001 * 109.47013 * 60.00490 * 8 6 5 37 37 H 1.08006 * 119.87942 * 359.97438 * 10 9 8 38 38 H 1.07999 * 119.75124 * 180.30115 * 11 10 9 39 39 H 1.07997 * 119.87860 * 179.70236 * 12 11 10 40 40 H 1.07994 * 120.12983 * 179.97438 * 13 12 11 41 41 H 0.97000 * 120.00057 * 180.02562 * 18 17 15 42 42 H 1.08997 * 109.67389 * 289.31494 * 23 5 4 43 43 H 1.08998 * 109.70536 * 168.79459 * 23 5 4 44 44 H 1.09002 * 110.86409 * 327.35101 * 25 24 23 45 45 H 1.09009 * 110.85815 * 91.01102 * 25 24 23 46 46 H 1.08999 * 109.82639 * 261.12542 * 26 25 24 47 47 H 1.09007 * 109.89532 * 140.20561 * 26 25 24 48 48 H 1.09005 * 110.31408 * 217.56297 * 28 27 26 49 49 H 1.09004 * 110.31937 * 95.37141 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0275 0.0000 4 6 2.0418 -0.7245 1.2500 5 7 3.5034 -0.8633 1.1461 6 6 4.3118 -0.4747 2.1519 7 8 5.5138 -0.5973 2.0459 8 6 3.7223 0.1115 3.4089 9 6 4.8308 0.4615 4.3679 10 6 5.1975 -0.4264 5.3537 11 6 6.2209 -0.1096 6.2332 12 6 6.8782 1.1076 6.1392 13 6 6.5245 2.0129 5.1651 14 6 5.4911 1.6995 4.2627 15 6 5.1187 2.6221 3.2580 16 1 4.6639 2.2704 2.3437 17 6 5.3394 3.9907 3.4484 18 7 5.5842 4.4534 4.6474 19 14 5.2845 5.1573 1.9904 20 1 3.8985 5.6590 1.8098 21 1 6.1970 6.3024 2.2380 22 1 5.7143 4.4380 0.7644 23 6 4.0541 -1.4393 -0.0934 24 6 3.4209 -0.7235 -1.2791 25 6 3.8450 -1.3939 -2.6043 26 6 3.7964 -0.2113 -3.5978 27 8 3.8762 0.9993 -2.8351 28 6 4.0097 0.6919 -1.4366 29 8 2.0081 -0.6767 -1.1672 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 0.5139 0.8899 33 1 1.7907 -0.1443 2.1380 34 1 1.5848 -1.7120 1.3136 35 1 3.1594 1.0113 3.1609 36 1 3.0571 -0.6172 3.8723 37 1 4.6888 -1.3753 5.4395 38 1 6.5053 -0.8143 7.0007 39 1 7.6709 1.3460 6.8328 40 1 7.0374 2.9606 5.0938 41 1 5.7368 5.4022 4.7793 42 1 3.8204 -2.5029 -0.1393 43 1 5.1349 -1.2998 -0.1149 44 1 4.8549 -1.7970 -2.5296 45 1 3.1358 -2.1707 -2.8906 46 1 2.8606 -0.2357 -4.1561 47 1 4.6393 -0.2706 -4.2865 48 1 3.4451 1.4057 -0.8366 49 1 5.0603 0.6994 -1.1460 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794310759.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:34 Heat of formation + Delta-G solvation = -98.817768 kcal Electronic energy + Delta-G solvation = -32014.051453 eV Core-core repulsion = 27905.938341 eV Total energy + Delta-G solvation = -4108.113113 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.00166 -39.12499 -37.80173 -37.16472 -34.54348 -33.65722 -33.61994 -31.73078 -30.83480 -29.54181 -29.36827 -27.35302 -26.59879 -25.47583 -24.65602 -23.11417 -21.78882 -20.94806 -20.60772 -19.80442 -18.64905 -17.50018 -17.17233 -16.89118 -16.39545 -15.89824 -15.50929 -15.42894 -15.03722 -14.86279 -14.62920 -14.45415 -13.82691 -13.77756 -13.56476 -13.40465 -13.08093 -12.89938 -12.62705 -12.58083 -12.40345 -12.19776 -11.78472 -11.70446 -11.66647 -11.57969 -11.47988 -11.31608 -11.18303 -11.06454 -10.97430 -10.71895 -10.66321 -10.40594 -10.05969 -9.53010 -9.49498 -9.38769 -9.22966 -9.15714 -8.38263 -7.32311 -7.30057 -6.74550 -4.35485 2.75387 2.89459 3.07013 3.12313 3.17244 3.20626 3.26672 3.31944 3.73184 3.93256 4.24758 4.47016 4.55536 4.65090 4.74744 4.84494 4.90964 4.97608 5.12750 5.17936 5.26757 5.34397 5.43627 5.50775 5.54016 5.60434 5.62334 5.72561 5.73179 5.76149 5.80811 5.88486 5.95777 5.97823 6.05504 6.26532 6.38085 6.49808 6.56442 6.78283 6.83394 7.07085 7.07369 7.28594 7.41327 7.58069 7.68088 7.91743 8.05339 8.12429 8.30430 8.62836 8.70451 8.90655 9.00535 10.19526 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010663 B = 0.004230 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2625.383765 B = 6618.535714 C = 7783.561201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.067 3.933 3 H 0.070 0.930 4 C 0.081 3.919 5 N -0.631 5.631 6 C 0.521 3.479 7 O -0.515 6.515 8 C -0.068 4.068 9 C -0.183 4.183 10 C -0.081 4.081 11 C -0.239 4.239 12 C -0.106 4.106 13 C -0.159 4.159 14 C 0.130 3.870 15 C -0.456 4.456 16 H 0.072 0.928 17 C 0.079 3.921 18 N -0.794 5.794 19 Si 0.897 3.103 20 H -0.269 1.269 21 H -0.275 1.275 22 H -0.260 1.260 23 C 0.098 3.902 24 C 0.075 3.925 25 C -0.139 4.139 26 C 0.055 3.945 27 O -0.379 6.379 28 C 0.032 3.968 29 O -0.356 6.356 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.117 0.883 41 H 0.280 0.720 42 H 0.072 0.928 43 H 0.103 0.897 44 H 0.094 0.906 45 H 0.095 0.905 46 H 0.071 0.929 47 H 0.068 0.932 48 H 0.090 0.910 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.234 -8.553 -11.148 16.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.009 3.991 3 H 0.088 0.912 4 C -0.043 4.043 5 N -0.368 5.368 6 C 0.310 3.690 7 O -0.388 6.388 8 C -0.107 4.107 9 C -0.185 4.185 10 C -0.099 4.099 11 C -0.258 4.258 12 C -0.125 4.125 13 C -0.178 4.178 14 C 0.128 3.872 15 C -0.486 4.486 16 H 0.090 0.910 17 C -0.139 4.139 18 N -0.419 5.419 19 Si 0.721 3.279 20 H -0.195 1.195 21 H -0.200 1.200 22 H -0.184 1.184 23 C -0.025 4.025 24 C 0.034 3.966 25 C -0.177 4.177 26 C -0.022 4.022 27 O -0.298 6.298 28 C -0.045 4.045 29 O -0.275 6.275 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.119 0.881 34 H 0.092 0.908 35 H 0.114 0.886 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.135 0.865 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.122 0.878 44 H 0.113 0.887 45 H 0.113 0.887 46 H 0.089 0.911 47 H 0.086 0.914 48 H 0.108 0.892 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.629 -8.257 -11.260 16.414 hybrid contribution 0.111 0.475 -0.307 0.577 sum -8.518 -7.781 -11.567 16.337 Atomic orbital electron populations 1.21709 0.91921 1.03102 1.03102 1.22628 0.95585 0.96124 0.84793 0.91208 1.22425 0.80730 1.01643 0.99455 1.48395 1.06503 1.65062 1.16881 1.21342 0.86859 0.76459 0.84291 1.90681 1.14719 1.53131 1.80258 1.20283 0.98269 1.00527 0.91655 1.19031 1.01498 0.98360 0.99629 1.20291 0.97151 0.96588 0.95856 1.20303 1.03296 0.98432 1.03814 1.20682 0.98918 0.94534 0.98368 1.21293 0.99120 0.99464 0.97914 1.17321 0.88683 0.90168 0.91070 1.19413 1.36068 0.90517 1.02558 0.91025 1.25850 0.92504 0.99350 0.96187 1.69813 1.34694 1.15673 1.21766 0.86482 0.79018 0.79778 0.82582 1.19456 1.19980 1.18408 1.21855 1.00648 0.97087 0.82892 1.22692 0.82771 0.95489 0.95662 1.23020 1.02985 0.99088 0.92566 1.23117 1.01534 0.83424 0.94086 1.88454 1.95074 1.28979 1.17338 1.23902 1.01476 0.96181 0.82931 1.87758 1.18866 1.77534 1.43358 0.91622 0.91448 0.90397 0.88105 0.90810 0.88604 0.90587 0.89821 0.89664 0.89569 0.86535 0.90935 0.90950 0.87849 0.88745 0.88688 0.91118 0.91353 0.89182 0.90608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.57 37.16 0.36 -0.85 16 2 C 0.07 0.76 3.20 -26.59 -0.09 0.67 16 3 H 0.07 0.89 6.29 -51.93 -0.33 0.56 16 4 C 0.08 0.95 5.81 -3.53 -0.02 0.93 16 5 N -0.63 -9.46 2.97 -172.71 -0.51 -9.97 16 6 C 0.52 10.01 7.35 -10.99 -0.08 9.93 16 7 O -0.51 -12.06 15.53 5.55 0.09 -11.98 16 8 C -0.07 -1.30 3.56 -29.03 -0.10 -1.40 16 9 C -0.18 -4.35 4.43 -103.91 -0.46 -4.81 16 10 C -0.08 -1.85 9.66 -39.66 -0.38 -2.23 16 11 C -0.24 -5.54 10.05 -39.29 -0.39 -5.94 16 12 C -0.11 -2.59 10.02 -39.66 -0.40 -2.99 16 13 C -0.16 -4.22 8.69 -38.87 -0.34 -4.56 16 14 C 0.13 3.44 5.56 -106.82 -0.59 2.84 16 15 C -0.46 -11.84 8.14 -37.75 -0.31 -12.15 16 16 H 0.07 1.81 6.68 -52.49 -0.35 1.46 16 17 C 0.08 1.96 5.16 -17.34 -0.09 1.87 16 18 N -0.79 -20.36 10.97 55.55 0.61 -19.75 16 19 Si 0.90 18.91 29.59 -169.99 -5.03 13.88 16 20 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 21 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 22 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 23 C 0.10 1.32 5.30 -3.93 -0.02 1.30 16 24 C 0.07 0.93 0.85 -89.65 -0.08 0.86 16 25 C -0.14 -1.36 6.20 -25.17 -0.16 -1.51 16 26 C 0.06 0.60 7.81 37.96 0.30 0.89 16 27 O -0.38 -5.62 11.37 -35.23 -0.40 -6.02 16 28 C 0.03 0.47 6.76 37.73 0.26 0.72 16 29 O -0.36 -4.44 9.93 -35.22 -0.35 -4.79 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.10 1.10 6.05 -51.93 -0.31 0.79 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.10 1.80 6.59 -51.93 -0.34 1.46 16 36 H 0.08 1.22 7.92 -51.93 -0.41 0.81 16 37 H 0.08 1.68 8.06 -52.48 -0.42 1.26 16 38 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 39 H 0.09 1.88 8.06 -52.49 -0.42 1.45 16 40 H 0.12 3.19 6.21 -52.49 -0.33 2.86 16 41 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.10 1.55 6.85 -51.93 -0.36 1.19 16 44 H 0.09 0.80 7.99 -51.93 -0.41 0.38 16 45 H 0.09 0.80 8.14 -51.92 -0.42 0.38 16 46 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 48 H 0.09 1.41 6.13 -51.93 -0.32 1.09 16 49 H 0.08 1.19 7.80 -51.93 -0.40 0.79 16 LS Contribution 385.88 15.07 5.82 5.82 Total: -1.00 -31.41 385.88 -9.73 -41.14 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -7.35 Total: 8.10 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: -2.60 Total: -16.42 kcal Atomic # 7 Polarization: -29.82 SS G_CDS: 0.10 Total: -29.72 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.66 Total: -22.79 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.41 -9.73 -41.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794310759.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.680 kcal (2) G-P(sol) polarization free energy of solvation -31.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds