Wall clock time and date at job start Wed Apr 1 2020 03:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.54646 * 2 1 4 4 C 1.53267 * 109.51646 * 239.87063 * 2 1 3 5 5 N 1.47159 * 108.53195 * 187.25290 * 4 2 1 6 6 C 1.34779 * 121.05376 * 231.05552 * 5 4 2 7 7 O 1.21276 * 120.00337 * 179.97438 * 6 5 4 8 8 C 1.50705 * 119.99587 * 359.71710 * 6 5 4 9 9 C 1.50705 * 109.46910 * 180.27671 * 8 6 5 10 10 C 1.37644 * 120.12597 * 264.73058 * 9 8 6 11 11 C 1.38612 * 120.24206 * 179.70086 * 10 9 8 12 12 C 1.38653 * 120.50512 * 0.60147 * 11 10 9 13 13 C 1.37597 * 120.24856 * 359.67467 * 12 11 10 14 14 C 1.40692 * 120.12697 * 85.00440 * 9 8 6 15 15 C 1.41396 * 120.24507 * 0.02562 * 14 9 8 16 16 H 1.08000 * 119.99819 * 334.05048 * 15 14 9 17 17 C 1.39942 * 120.00199 * 154.05403 * 15 14 9 18 18 N 1.30825 * 119.99756 * 343.65563 * 17 15 14 19 19 Si 1.86796 * 120.00171 * 163.66087 * 17 15 14 20 20 H 1.48506 * 109.47600 * 89.99530 * 19 17 15 21 21 H 1.48505 * 109.47357 * 209.99529 * 19 17 15 22 22 H 1.48504 * 109.47394 * 329.99521 * 19 17 15 23 23 C 1.47280 * 117.89839 * 51.31994 * 5 4 2 24 24 C 1.53098 * 108.15346 * 310.11169 * 23 5 4 25 25 C 1.53960 * 110.11168 * 173.43402 * 24 23 5 26 26 C 1.54604 * 103.88027 * 118.36762 * 25 24 23 27 27 O 1.44479 * 104.82413 * 23.88409 * 26 25 24 28 28 C 1.44554 * 105.36318 * 319.84348 * 27 26 25 29 29 O 1.42207 * 110.76186 * 50.96034 * 24 23 5 30 30 H 1.08999 * 109.46693 * 180.13006 * 1 2 3 31 31 H 1.09004 * 109.47083 * 300.12804 * 1 2 3 32 32 H 1.08998 * 109.47037 * 60.13153 * 1 2 3 33 33 H 1.09003 * 109.62911 * 67.53656 * 4 2 1 34 34 H 1.09005 * 109.78928 * 307.05975 * 4 2 1 35 35 H 1.08992 * 109.47741 * 300.27819 * 8 6 5 36 36 H 1.09007 * 109.46802 * 60.28227 * 8 6 5 37 37 H 1.07992 * 119.87798 * 359.97438 * 10 9 8 38 38 H 1.08006 * 119.74735 * 180.29509 * 11 10 9 39 39 H 1.07998 * 119.88055 * 179.70806 * 12 11 10 40 40 H 1.08003 * 120.12957 * 180.02562 * 13 12 11 41 41 H 0.97000 * 119.99824 * 180.02562 * 18 17 15 42 42 H 1.09007 * 109.67881 * 69.89622 * 23 5 4 43 43 H 1.08992 * 109.68538 * 190.44705 * 23 5 4 44 44 H 1.09003 * 110.54249 * 236.96549 * 25 24 23 45 45 H 1.08998 * 110.54475 * 359.76542 * 25 24 23 46 46 H 1.09004 * 110.37208 * 142.71661 * 26 25 24 47 47 H 1.09003 * 110.37255 * 265.04450 * 26 25 24 48 48 H 1.09000 * 110.39333 * 281.18618 * 28 27 26 49 49 H 1.08996 * 110.38801 * 158.79594 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8947 1.0272 0.0000 4 6 2.0420 -0.7251 -1.2494 5 7 3.5029 -0.8667 -1.1424 6 6 4.3141 -0.4828 -2.1479 7 8 5.5155 -0.6077 -2.0392 8 6 3.7279 0.0963 -3.4097 9 6 4.8386 0.4351 -4.3702 10 6 5.3454 1.7140 -4.4169 11 6 6.3713 2.0268 -5.2951 12 6 6.8900 1.0610 -6.1440 13 6 6.3949 -0.2225 -6.1185 14 6 5.3576 -0.5531 -5.2266 15 6 4.8405 -1.8687 -5.1919 16 1 4.3811 -2.2447 -4.2897 17 6 4.9241 -2.6836 -6.3266 18 7 5.1768 -2.1533 -7.4955 19 14 4.6748 -4.5284 -6.1720 20 1 3.2362 -4.8503 -6.3520 21 1 5.4719 -5.2246 -7.2138 22 1 5.1179 -4.9769 -4.8275 23 6 4.0501 -1.4466 0.0959 24 6 3.4247 -0.7111 1.2841 25 6 3.8390 -1.3880 2.6034 26 6 4.6172 -0.2854 3.3576 27 8 4.1272 0.9565 2.8054 28 6 3.9903 0.7171 1.3864 29 8 2.0079 -0.6767 1.1666 30 1 -0.3633 -1.0277 0.0023 31 1 -0.3633 0.5158 0.8889 32 1 -0.3633 0.5118 -0.8911 33 1 1.7946 -0.1436 -2.1375 34 1 1.5827 -1.7113 -1.3180 35 1 3.0607 -0.6333 -3.8686 36 1 3.1677 0.9998 -3.1687 37 1 4.9454 2.4754 -3.7639 38 1 6.7662 3.0317 -5.3217 39 1 7.6861 1.3170 -6.8275 40 1 6.8007 -0.9734 -6.7803 41 1 5.2344 -2.7181 -8.2820 42 1 3.8027 -2.5070 0.1452 43 1 5.1326 -1.3205 0.1132 44 1 2.9589 -1.6912 3.1705 45 1 4.4832 -2.2452 2.4076 46 1 4.4060 -0.3350 4.4258 47 1 5.6875 -0.3849 3.1766 48 1 4.9618 0.7769 0.8957 49 1 3.2965 1.4329 0.9457 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794310762.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:38 Heat of formation + Delta-G solvation = -98.473239 kcal Electronic energy + Delta-G solvation = -31675.959452 eV Core-core repulsion = 27567.861279 eV Total energy + Delta-G solvation = -4108.098173 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.01286 -39.12355 -37.88295 -37.18656 -34.54660 -33.64849 -33.61077 -31.72996 -30.86564 -29.49517 -29.25382 -27.34089 -26.60664 -25.45751 -24.66455 -23.50899 -21.66751 -20.95831 -20.54398 -19.85110 -18.69552 -17.39710 -17.17850 -16.87669 -16.40644 -15.95642 -15.83346 -15.35687 -15.17375 -14.92991 -14.52640 -14.32089 -13.90564 -13.83228 -13.56889 -13.28016 -13.08307 -12.94743 -12.67847 -12.57002 -12.40573 -12.18439 -11.79378 -11.75573 -11.67996 -11.58772 -11.49287 -11.30816 -11.18103 -11.07210 -10.97848 -10.72713 -10.67907 -10.41183 -10.21209 -9.79543 -9.49671 -9.38804 -9.22673 -9.16222 -8.37187 -7.32528 -7.30168 -6.74846 -4.35502 2.75293 2.89620 3.05422 3.10471 3.18531 3.19941 3.25984 3.33584 3.72193 3.92533 4.27786 4.45382 4.48371 4.64496 4.70352 4.82185 4.83436 4.90493 5.11066 5.16167 5.19894 5.28894 5.41245 5.44916 5.54682 5.57351 5.58122 5.61486 5.70550 5.72384 5.78433 5.81573 5.93359 5.97136 6.06048 6.26077 6.38589 6.48590 6.49676 6.57696 6.78336 7.04715 7.07464 7.28402 7.41144 7.58470 7.68415 7.91567 8.05615 8.12309 8.30338 8.62933 8.70778 8.90554 9.00448 10.19365 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012072 B = 0.003517 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.884198 B = 7958.513027 C = 8771.988226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.068 3.932 3 H 0.066 0.934 4 C 0.080 3.920 5 N -0.631 5.631 6 C 0.520 3.480 7 O -0.515 6.515 8 C -0.068 4.068 9 C -0.183 4.183 10 C -0.081 4.081 11 C -0.239 4.239 12 C -0.106 4.106 13 C -0.159 4.159 14 C 0.130 3.870 15 C -0.457 4.457 16 H 0.073 0.927 17 C 0.078 3.922 18 N -0.794 5.794 19 Si 0.901 3.099 20 H -0.270 1.270 21 H -0.275 1.275 22 H -0.262 1.262 23 C 0.096 3.904 24 C 0.078 3.922 25 C -0.140 4.140 26 C 0.045 3.955 27 O -0.371 6.371 28 C 0.025 3.975 29 O -0.359 6.359 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.100 0.900 34 H 0.076 0.924 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.117 0.883 41 H 0.280 0.720 42 H 0.073 0.927 43 H 0.102 0.898 44 H 0.092 0.908 45 H 0.091 0.909 46 H 0.095 0.905 47 H 0.063 0.937 48 H 0.073 0.927 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.190 0.677 15.036 17.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.010 3.990 3 H 0.084 0.916 4 C -0.044 4.044 5 N -0.368 5.368 6 C 0.310 3.690 7 O -0.388 6.388 8 C -0.107 4.107 9 C -0.185 4.185 10 C -0.099 4.099 11 C -0.258 4.258 12 C -0.125 4.125 13 C -0.178 4.178 14 C 0.128 3.872 15 C -0.486 4.486 16 H 0.091 0.909 17 C -0.140 4.140 18 N -0.420 5.420 19 Si 0.726 3.274 20 H -0.195 1.195 21 H -0.200 1.200 22 H -0.186 1.186 23 C -0.028 4.028 24 C 0.037 3.963 25 C -0.178 4.178 26 C -0.032 4.032 27 O -0.289 6.289 28 C -0.051 4.051 29 O -0.278 6.278 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.118 0.882 34 H 0.094 0.906 35 H 0.115 0.885 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.135 0.865 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.120 0.880 44 H 0.111 0.889 45 H 0.110 0.890 46 H 0.113 0.887 47 H 0.082 0.918 48 H 0.091 0.909 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.644 0.664 15.045 16.889 hybrid contribution 0.043 -1.011 -0.397 1.087 sum -7.601 -0.347 14.648 16.506 Atomic orbital electron populations 1.21718 0.91966 1.03320 1.02941 1.22605 0.95591 0.95760 0.85080 0.91589 1.22429 0.80798 1.01975 0.99151 1.48369 1.06512 1.64968 1.16955 1.21340 0.86830 0.76750 0.84052 1.90677 1.14850 1.53306 1.80010 1.20285 0.98625 1.00367 0.91457 1.19033 1.01824 0.93804 1.03857 1.20286 0.96840 0.95013 0.97750 1.20302 1.03750 0.98020 1.03758 1.20679 0.99083 0.94460 0.98272 1.21294 0.98421 0.95406 1.02690 1.17322 0.88976 0.91740 0.89210 1.19446 1.34381 0.97047 0.97769 0.90932 1.25864 0.92691 1.00710 0.94698 1.69817 1.35528 1.37471 0.99189 0.86425 0.79014 0.82625 0.79365 1.19513 1.20032 1.18601 1.22159 1.00585 0.97138 0.82877 1.22799 0.82517 0.95367 0.95639 1.22891 1.01585 0.99036 0.94319 1.23477 0.97742 0.83094 0.98881 1.89159 1.86713 1.33107 1.19953 1.23991 1.01476 0.96522 0.83159 1.87880 1.19250 1.77439 1.43211 0.91477 0.91493 0.90471 0.88220 0.90611 0.88515 0.90695 0.89836 0.89657 0.89566 0.86543 0.90946 0.90859 0.87961 0.88915 0.89041 0.88723 0.91840 0.90867 0.88618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.57 37.16 0.36 -0.78 16 2 C 0.07 0.71 3.16 -26.59 -0.08 0.63 16 3 H 0.07 0.71 6.12 -51.93 -0.32 0.39 16 4 C 0.08 0.94 5.81 -3.54 -0.02 0.92 16 5 N -0.63 -9.50 2.90 -172.30 -0.50 -10.00 16 6 C 0.52 10.02 7.35 -10.98 -0.08 9.94 16 7 O -0.52 -12.09 15.52 5.56 0.09 -12.00 16 8 C -0.07 -1.30 3.56 -29.03 -0.10 -1.41 16 9 C -0.18 -4.36 4.43 -103.91 -0.46 -4.82 16 10 C -0.08 -1.84 9.66 -39.66 -0.38 -2.23 16 11 C -0.24 -5.54 10.05 -39.29 -0.39 -5.94 16 12 C -0.11 -2.59 10.02 -39.66 -0.40 -2.99 16 13 C -0.16 -4.23 8.68 -38.87 -0.34 -4.57 16 14 C 0.13 3.45 5.56 -106.83 -0.59 2.85 16 15 C -0.46 -11.94 8.14 -37.74 -0.31 -12.25 16 16 H 0.07 1.86 6.68 -52.49 -0.35 1.51 16 17 C 0.08 1.94 5.16 -17.34 -0.09 1.85 16 18 N -0.79 -20.38 10.97 55.55 0.61 -19.77 16 19 Si 0.90 18.77 29.59 -169.99 -5.03 13.74 16 20 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 21 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 22 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 23 C 0.10 1.30 5.07 -3.57 -0.02 1.28 16 24 C 0.08 0.92 1.05 -89.57 -0.09 0.83 16 25 C -0.14 -1.34 6.53 -25.39 -0.17 -1.50 16 26 C 0.04 0.43 7.65 38.00 0.29 0.72 16 27 O -0.37 -4.85 11.66 -35.23 -0.41 -5.26 16 28 C 0.03 0.33 6.61 37.65 0.25 0.57 16 29 O -0.36 -4.33 9.82 -35.23 -0.35 -4.68 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.10 1.07 6.05 -51.93 -0.31 0.76 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.10 1.84 6.92 -51.93 -0.36 1.48 16 36 H 0.07 1.20 7.58 -51.92 -0.39 0.80 16 37 H 0.08 1.68 8.06 -52.49 -0.42 1.25 16 38 H 0.09 1.76 8.06 -52.48 -0.42 1.33 16 39 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 40 H 0.12 3.19 6.22 -52.48 -0.33 2.86 16 41 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 42 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.10 1.53 6.87 -51.93 -0.36 1.17 16 44 H 0.09 0.85 7.99 -51.93 -0.41 0.43 16 45 H 0.09 0.73 7.71 -51.93 -0.40 0.33 16 46 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.07 1.01 7.69 -51.93 -0.40 0.62 16 49 H 0.10 1.21 5.91 -51.93 -0.31 0.91 16 LS Contribution 385.04 15.07 5.80 5.80 Total: -1.00 -31.55 385.04 -9.73 -41.28 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -7.30 Total: 7.76 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: -2.64 Total: -16.87 kcal Atomic # 7 Polarization: -29.88 SS G_CDS: 0.11 Total: -29.77 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.67 Total: -21.94 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.55 -9.73 -41.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794310762.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.197 kcal (2) G-P(sol) polarization free energy of solvation -31.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds