Wall clock time and date at job start Wed Apr 1 2020 03:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.51065 * 2 1 4 4 C 1.53283 * 109.51674 * 239.89161 * 2 1 3 5 5 N 1.47175 * 108.70001 * 186.87571 * 4 2 1 6 6 C 1.34780 * 121.08497 * 231.42187 * 5 4 2 7 7 O 1.21273 * 120.00251 * 180.02562 * 6 5 4 8 8 C 1.50706 * 119.99631 * 0.02562 * 6 5 4 9 9 C 1.50707 * 109.46970 * 179.97438 * 8 6 5 10 10 C 1.37638 * 120.12672 * 264.72744 * 9 8 6 11 11 C 1.38615 * 120.24500 * 179.74657 * 10 9 8 12 12 C 1.38652 * 120.50098 * 0.50058 * 11 10 9 13 13 C 1.37595 * 120.25050 * 359.77893 * 12 11 10 14 14 C 1.40693 * 120.12515 * 84.99853 * 9 8 6 15 15 C 1.41394 * 120.24708 * 0.02562 * 14 9 8 16 16 H 1.07994 * 120.00253 * 334.05196 * 15 14 9 17 17 C 1.39944 * 119.99999 * 154.04551 * 15 14 9 18 18 N 1.30824 * 120.00156 * 343.67525 * 17 15 14 19 19 Si 1.86803 * 120.00098 * 163.66822 * 17 15 14 20 20 H 1.48500 * 109.47198 * 59.99982 * 19 17 15 21 21 H 1.48503 * 109.47338 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47189 * 300.00252 * 19 17 15 23 23 C 1.47721 * 117.58699 * 51.25662 * 5 4 2 24 24 C 1.52297 * 108.55032 * 311.05394 * 23 5 4 25 25 C 1.54461 * 110.45968 * 286.01031 * 24 23 5 26 26 C 1.54530 * 102.16915 * 209.16845 * 25 24 23 27 27 O 1.43303 * 107.61087 * 20.65229 * 26 25 24 28 28 C 1.43812 * 110.01093 * 1.59899 * 27 26 25 29 29 O 1.41796 * 111.62783 * 49.77533 * 24 23 5 30 30 H 1.09000 * 109.46752 * 180.10290 * 1 2 3 31 31 H 1.08994 * 109.47687 * 300.11024 * 1 2 3 32 32 H 1.09005 * 109.46920 * 60.11153 * 1 2 3 33 33 H 1.08994 * 109.62205 * 306.68669 * 4 2 1 34 34 H 1.08999 * 109.62298 * 67.06555 * 4 2 1 35 35 H 1.08997 * 109.46988 * 299.99353 * 8 6 5 36 36 H 1.08997 * 109.47225 * 60.00000 * 8 6 5 37 37 H 1.07996 * 119.87459 * 359.97438 * 10 9 8 38 38 H 1.08000 * 119.74514 * 180.25923 * 11 10 9 39 39 H 1.08000 * 119.87662 * 179.74871 * 12 11 10 40 40 H 1.08003 * 120.13233 * 179.97438 * 13 12 11 41 41 H 0.96999 * 119.99915 * 179.97438 * 18 17 15 42 42 H 1.08995 * 109.58042 * 191.34258 * 23 5 4 43 43 H 1.08993 * 109.77404 * 70.87583 * 23 5 4 44 44 H 1.09006 * 110.86369 * 327.33278 * 25 24 23 45 45 H 1.08994 * 110.86676 * 90.99688 * 25 24 23 46 46 H 1.09001 * 109.82711 * 261.13140 * 26 25 24 47 47 H 1.09008 * 109.89952 * 140.21458 * 26 25 24 48 48 H 1.09002 * 110.31594 * 217.56420 * 28 27 26 49 49 H 1.09004 * 110.31423 * 95.37294 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0421 -0.7247 -1.2498 5 7 3.5042 -0.8603 -1.1509 6 6 4.3092 -0.4681 -2.1582 7 8 5.5115 -0.5893 -2.0560 8 6 3.7151 0.1209 -3.4117 9 6 4.8204 0.4746 -4.3733 10 6 5.3210 1.7562 -4.4091 11 6 6.3412 2.0829 -5.2889 12 6 6.8616 1.1279 -6.1488 13 6 6.3725 -0.1581 -6.1343 14 6 5.3404 -0.5025 -5.2417 15 6 4.8297 -1.8208 -5.2181 16 1 4.3757 -2.2080 -4.3180 17 6 4.9123 -2.6238 -6.3613 18 7 5.1579 -2.0806 -7.5258 19 14 4.6720 -4.4712 -6.2245 20 1 3.3187 -4.7556 -5.6834 21 1 4.8083 -5.0890 -7.5680 22 1 5.6985 -5.0378 -5.3131 23 6 4.0552 -1.4373 0.0924 24 6 3.4207 -0.7253 1.2798 25 6 4.0071 0.6953 1.4337 26 6 3.8843 0.9353 2.9553 27 8 3.7702 -0.3453 3.5884 28 6 3.8470 -1.3899 2.6030 29 8 2.0081 -0.6776 1.1666 30 1 -0.3633 -1.0277 0.0018 31 1 -0.3634 0.5155 0.8889 32 1 -0.3633 0.5121 -0.8910 33 1 1.5863 -1.7128 -1.3125 34 1 1.7873 -0.1469 -2.1382 35 1 3.0492 -0.6070 -3.8750 36 1 3.1521 1.0195 -3.1595 37 1 4.9201 2.5091 -3.7468 38 1 6.7309 3.0900 -5.3073 39 1 7.6536 1.3945 -6.8330 40 1 6.7791 -0.9004 -6.8053 41 1 5.2155 -2.6372 -8.3181 42 1 5.1355 -1.2943 0.1140 43 1 3.8255 -2.5018 0.1382 44 1 5.0507 0.7207 1.1198 45 1 3.4154 1.4220 0.8771 46 1 2.9964 1.5318 3.1651 47 1 4.7715 1.4515 3.3224 48 1 3.1639 -2.2005 2.8568 49 1 4.8680 -1.7641 2.5270 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794310767.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:45 Heat of formation + Delta-G solvation = -117.208293 kcal Electronic energy + Delta-G solvation = -31642.258307 eV Core-core repulsion = 27533.347721 eV Total energy + Delta-G solvation = -4108.910586 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.04621 -40.52354 -39.21814 -38.60111 -35.77332 -35.51079 -34.49374 -33.36136 -31.80968 -31.36185 -30.57091 -28.90215 -27.58100 -27.10340 -26.03861 -23.86894 -22.93472 -22.83769 -22.07426 -21.01721 -19.97505 -19.05767 -18.48374 -18.16699 -17.47442 -17.34402 -16.89128 -16.46356 -16.37182 -16.22177 -15.92601 -15.73010 -15.36018 -15.35199 -14.79831 -14.68998 -14.39889 -14.24751 -14.01246 -13.67805 -13.45617 -13.36990 -13.17226 -13.08801 -12.88055 -12.76003 -12.74621 -12.72025 -12.51748 -12.50619 -12.37881 -12.13539 -12.01280 -11.69746 -11.33652 -11.22019 -11.07650 -11.03817 -10.74418 -10.56881 -9.56925 -9.23802 -9.17292 -8.60727 -6.30668 0.98151 1.11801 1.34481 1.44286 1.52799 1.72425 1.89230 2.18285 2.34256 2.77185 2.82894 3.28309 3.47912 3.65241 3.73953 3.78165 3.90220 3.99572 4.09471 4.13162 4.24167 4.26766 4.32088 4.37604 4.46069 4.52443 4.58434 4.59907 4.63856 4.68749 4.71284 4.76666 4.76858 4.81771 4.89103 4.98092 5.03800 5.05224 5.18081 5.32005 5.35464 5.39601 5.53647 5.75793 5.88227 6.02107 6.13143 6.14617 6.20707 6.34938 6.40801 6.72556 6.98040 7.10138 7.26555 8.35582 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012472 B = 0.003452 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.454969 B = 8109.458959 C = 8961.292992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.071 3.929 3 H 0.068 0.932 4 C 0.072 3.928 5 N -0.620 5.620 6 C 0.523 3.477 7 O -0.569 6.569 8 C -0.064 4.064 9 C -0.188 4.188 10 C -0.090 4.090 11 C -0.242 4.242 12 C -0.117 4.117 13 C -0.194 4.194 14 C 0.098 3.902 15 C -0.483 4.483 16 H 0.069 0.931 17 C 0.039 3.961 18 N -0.825 5.825 19 Si 0.968 3.032 20 H -0.253 1.253 21 H -0.266 1.266 22 H -0.272 1.272 23 C 0.095 3.905 24 C 0.081 3.919 25 C -0.176 4.176 26 C 0.059 3.941 27 O -0.396 6.396 28 C 0.070 3.930 29 O -0.362 6.362 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.111 0.889 35 H 0.096 0.904 36 H 0.111 0.889 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.104 0.896 40 H 0.096 0.904 41 H 0.286 0.714 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.089 0.911 46 H 0.078 0.922 47 H 0.080 0.920 48 H 0.106 0.894 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.470 2.746 15.497 18.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.013 3.987 3 H 0.086 0.914 4 C -0.050 4.050 5 N -0.355 5.355 6 C 0.314 3.686 7 O -0.447 6.447 8 C -0.103 4.103 9 C -0.190 4.190 10 C -0.108 4.108 11 C -0.261 4.261 12 C -0.135 4.135 13 C -0.213 4.213 14 C 0.095 3.905 15 C -0.513 4.513 16 H 0.087 0.913 17 C -0.176 4.176 18 N -0.451 5.451 19 Si 0.790 3.210 20 H -0.177 1.177 21 H -0.191 1.191 22 H -0.197 1.197 23 C -0.027 4.027 24 C 0.040 3.960 25 C -0.214 4.214 26 C -0.017 4.017 27 O -0.316 6.316 28 C -0.006 4.006 29 O -0.281 6.281 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.114 0.886 33 H 0.102 0.898 34 H 0.130 0.870 35 H 0.115 0.885 36 H 0.129 0.871 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.123 0.877 40 H 0.114 0.886 41 H 0.097 0.903 42 H 0.104 0.896 43 H 0.100 0.900 44 H 0.097 0.903 45 H 0.108 0.892 46 H 0.096 0.904 47 H 0.098 0.902 48 H 0.124 0.876 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.960 2.524 15.624 18.700 hybrid contribution 0.646 -0.724 -0.931 1.344 sum -9.315 1.800 14.693 17.489 Atomic orbital electron populations 1.21738 0.89840 1.03841 1.04056 1.22731 0.96999 0.95316 0.83615 0.91398 1.22734 0.78570 1.03077 1.00654 1.48352 1.07643 1.63359 1.16184 1.21187 0.86358 0.76581 0.84518 1.90656 1.16937 1.56056 1.81009 1.20269 0.97351 1.01909 0.90813 1.19511 1.02405 0.93721 1.03378 1.20714 0.96681 0.95461 0.97936 1.20710 1.03572 0.99078 1.02738 1.20947 0.99594 0.94043 0.98945 1.21302 0.99965 0.96185 1.03860 1.17706 0.89499 0.92923 0.90328 1.19562 1.36014 0.97786 0.97888 0.91294 1.26622 0.92087 1.04825 0.94070 1.69869 1.36198 1.39260 0.99803 0.85465 0.79989 0.77040 0.78555 1.17686 1.19059 1.19724 1.21978 0.99778 0.98028 0.82962 1.22631 0.82692 0.95199 0.95495 1.23576 1.02506 0.97647 0.97686 1.23163 1.02359 0.85653 0.90556 1.88410 1.95121 1.15259 1.32767 1.23316 1.02149 0.91133 0.84028 1.87795 1.18658 1.77766 1.43871 0.91334 0.91067 0.88633 0.89783 0.87048 0.88550 0.87074 0.86576 0.86712 0.87750 0.88606 0.90330 0.89621 0.90038 0.90348 0.89222 0.90392 0.90206 0.87592 0.89185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.57 71.98 0.69 -1.00 16 2 C 0.07 1.25 3.21 30.69 0.10 1.35 16 3 H 0.07 1.19 6.27 -2.39 -0.01 1.17 16 4 C 0.07 1.49 5.80 86.35 0.50 1.99 16 5 N -0.62 -17.70 2.98 -817.77 -2.44 -20.14 16 6 C 0.52 19.76 7.36 87.66 0.64 20.40 16 7 O -0.57 -27.05 15.55 -3.01 -0.05 -27.10 16 8 C -0.06 -2.37 3.56 29.11 0.10 -2.27 16 9 C -0.19 -8.89 4.43 -19.40 -0.09 -8.97 16 10 C -0.09 -3.96 9.66 22.22 0.21 -3.74 16 11 C -0.24 -10.87 10.05 22.46 0.23 -10.64 16 12 C -0.12 -5.73 10.02 22.22 0.22 -5.51 16 13 C -0.19 -10.67 8.68 22.73 0.20 -10.47 16 14 C 0.10 5.31 5.56 -21.29 -0.12 5.19 16 15 C -0.48 -25.88 8.14 23.46 0.19 -25.69 16 16 H 0.07 3.61 6.68 -2.91 -0.02 3.59 16 17 C 0.04 1.96 5.16 85.26 0.44 2.40 16 18 N -0.83 -43.51 10.97 21.83 0.24 -43.27 16 19 Si 0.97 38.91 29.59 68.60 2.03 40.94 16 20 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 21 H -0.27 -10.09 7.11 99.48 0.71 -9.39 16 22 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 23 C 0.10 2.48 5.31 85.91 0.46 2.93 16 24 C 0.08 1.75 0.86 -10.16 -0.01 1.74 16 25 C -0.18 -3.70 5.97 31.61 0.19 -3.51 16 26 C 0.06 1.13 7.81 72.50 0.57 1.69 16 27 O -0.40 -9.03 11.36 -148.98 -1.69 -10.72 16 28 C 0.07 1.39 6.98 72.35 0.50 1.90 16 29 O -0.36 -7.68 9.93 -148.92 -1.48 -9.16 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.11 2.04 6.05 -2.39 -0.01 2.03 16 35 H 0.10 3.58 6.92 -2.39 -0.02 3.56 16 36 H 0.11 3.21 7.59 -2.39 -0.02 3.19 16 37 H 0.12 4.26 8.06 -2.91 -0.02 4.24 16 38 H 0.11 4.39 8.06 -2.91 -0.02 4.37 16 39 H 0.10 4.55 8.06 -2.91 -0.02 4.53 16 40 H 0.10 5.54 6.22 -2.91 -0.02 5.52 16 41 H 0.29 13.75 8.30 -92.71 -0.77 12.98 16 42 H 0.09 2.55 6.87 -2.39 -0.02 2.53 16 43 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.08 1.84 7.81 -2.38 -0.02 1.82 16 45 H 0.09 1.82 6.13 -2.39 -0.01 1.80 16 46 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 48 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 49 H 0.09 1.58 7.98 -2.39 -0.02 1.56 16 Total: -1.00 -69.47 385.94 2.60 -66.87 By element: Atomic # 1 Polarization: 33.82 SS G_CDS: 0.96 Total: 34.78 kcal Atomic # 6 Polarization: -37.24 SS G_CDS: 5.03 Total: -32.20 kcal Atomic # 7 Polarization: -61.21 SS G_CDS: -2.20 Total: -63.41 kcal Atomic # 8 Polarization: -43.76 SS G_CDS: -3.22 Total: -46.98 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 2.03 Total: 40.94 kcal Total: -69.47 2.60 -66.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794310767.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.333 kcal (2) G-P(sol) polarization free energy of solvation -69.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds