Wall clock time and date at job start Wed Apr 1 2020 04:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34840 * 125.52357 * 2 1 4 4 C 1.36565 * 108.61158 * 180.02562 * 3 2 1 5 5 C 1.48510 * 126.28191 * 180.02562 * 4 3 2 6 6 N 1.34032 * 126.66893 * 179.71151 * 5 4 3 7 7 N 1.28985 * 107.27061 * 179.86887 * 6 5 4 8 8 N 1.28728 * 108.93548 * 0.39903 * 7 6 5 9 9 H 0.97002 * 125.33961 * 179.76557 * 8 7 6 10 10 N 1.28866 * 109.31774 * 359.74481 * 8 7 6 11 11 C 1.40808 * 107.43435 * 359.77902 * 4 3 2 12 12 C 1.36671 * 107.04918 * 0.35760 * 11 4 3 13 13 C 1.46727 * 126.02392 * 179.90756 * 12 11 4 14 14 O 1.21686 * 120.00250 * 175.18353 * 13 12 11 15 15 N 1.34779 * 119.99807 * 355.18104 * 13 12 11 16 16 C 1.46498 * 120.00022 * 184.39683 * 15 13 12 17 17 C 1.53036 * 109.46075 * 154.99832 * 16 15 13 18 18 C 1.53194 * 109.31401 * 181.38330 * 17 16 15 19 19 N 1.46926 * 108.89512 * 305.29617 * 18 17 16 20 20 C 1.36932 * 120.63327 * 233.67510 * 19 18 17 21 21 H 1.07998 * 120.00250 * 30.62441 * 20 19 18 22 22 C 1.38809 * 120.00191 * 210.62577 * 20 19 18 23 23 N 1.31623 * 119.99872 * 11.53329 * 22 20 19 24 24 Si 1.86803 * 120.00111 * 191.53780 * 22 20 19 25 25 H 1.48507 * 109.46989 * 89.99942 * 24 22 20 26 26 H 1.48497 * 109.47048 * 209.99776 * 24 22 20 27 27 H 1.48499 * 109.47060 * 329.99630 * 24 22 20 28 28 C 1.47210 * 118.55373 * 53.53405 * 19 18 17 29 29 C 1.53040 * 109.46027 * 275.06750 * 16 15 13 30 30 H 1.09009 * 109.46780 * 271.80917 * 1 2 3 31 31 H 1.08992 * 109.47516 * 31.80505 * 1 2 3 32 32 H 1.08999 * 109.47423 * 151.81350 * 1 2 3 33 33 H 1.07998 * 125.69917 * 0.02562 * 3 2 1 34 34 H 1.07994 * 126.47590 * 180.25090 * 11 4 3 35 35 H 0.97000 * 119.99613 * 4.39302 * 15 13 12 36 36 H 1.09000 * 109.45000 * 35.03172 * 16 15 13 37 37 H 1.09004 * 109.49863 * 61.43318 * 17 16 15 38 38 H 1.09003 * 109.50001 * 301.33578 * 17 16 15 39 39 H 1.08996 * 109.58381 * 65.15612 * 18 17 16 40 40 H 1.09004 * 109.58949 * 185.43548 * 18 17 16 41 41 H 0.96997 * 120.00173 * 180.02562 * 23 22 20 42 42 H 1.08999 * 109.53319 * 186.67533 * 28 19 18 43 43 H 1.09008 * 109.67551 * 66.37226 * 28 19 18 44 44 H 1.09001 * 109.49671 * 298.56778 * 29 16 15 45 45 H 1.09001 * 109.49611 * 58.65859 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2485 1.0974 0.0000 4 6 3.5551 0.7002 -0.0006 5 6 4.7442 1.5899 -0.0002 6 7 6.0291 1.2087 0.0046 7 7 6.7466 2.2806 0.0002 8 7 5.9671 3.3050 0.0013 9 1 6.2570 4.2307 0.0020 10 7 4.7411 2.9078 0.0011 11 6 3.5679 -0.7079 0.0042 12 6 2.2650 -1.1205 -0.0006 13 6 1.8006 -2.5123 0.0000 14 8 0.6116 -2.7570 0.0839 15 7 2.6911 -3.5198 -0.0924 16 6 2.2229 -4.9046 -0.1889 17 6 3.2879 -5.7556 -0.8843 18 6 2.7807 -7.1953 -1.0144 19 7 2.3943 -7.6856 0.3156 20 6 2.9113 -8.8551 0.8054 21 1 3.9032 -9.1699 0.5165 22 6 2.1606 -9.6362 1.6732 23 7 0.8814 -9.3809 1.8491 24 14 2.9659 -11.0496 2.5917 25 1 3.4967 -10.5584 3.8888 26 1 1.9616 -12.1150 2.8395 27 1 4.0794 -11.5987 1.7771 28 6 1.4428 -6.8909 1.1094 29 6 1.9650 -5.4547 1.2157 30 1 -0.3633 0.0324 1.0273 31 1 -0.3634 0.8733 -0.5416 32 1 -0.3634 -0.9058 -0.4854 33 1 1.9009 2.1199 0.0004 34 1 4.4421 -1.3419 0.0089 35 1 3.6419 -3.3280 -0.0950 36 1 1.2990 -4.9360 -0.7665 37 1 4.2045 -5.7447 -0.2945 38 1 3.4880 -5.3493 -1.8758 39 1 1.9165 -7.2196 -1.6782 40 1 3.5714 -7.8260 -1.4209 41 1 0.3569 -9.9265 2.4558 42 1 1.3515 -7.3213 2.1067 43 1 0.4682 -6.8902 0.6211 44 1 2.8940 -5.4467 1.7858 45 1 1.2235 -4.8343 1.7189 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822637010.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:21 Heat of formation + Delta-G solvation = 159.800599 kcal Electronic energy + Delta-G solvation = -29370.452217 eV Core-core repulsion = 25234.598797 eV Total energy + Delta-G solvation = -4135.853420 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.60604 -41.78368 -39.29674 -37.20771 -34.82829 -34.45215 -33.94593 -32.69323 -31.96008 -30.34968 -29.78679 -28.87895 -27.17297 -25.18245 -24.70044 -24.03248 -22.93086 -22.18676 -21.46210 -20.57676 -19.82245 -19.24295 -19.06519 -17.89360 -17.31384 -16.74491 -15.99488 -15.83620 -15.63084 -14.94568 -14.69627 -14.39333 -14.27154 -13.94079 -13.76402 -13.53030 -13.44875 -12.97116 -12.87708 -12.79970 -12.58083 -12.51575 -12.35288 -12.25787 -11.55879 -11.46686 -11.29762 -11.17739 -11.06426 -10.90552 -10.74257 -10.37160 -10.19584 -10.08061 -9.92285 -9.75580 -9.50959 -8.94777 -8.77401 -8.48011 -8.36722 -6.62089 -5.75574 -3.23116 0.81286 1.28830 1.45566 2.02554 2.36756 2.84019 3.33316 3.38998 3.40153 3.46216 3.47444 3.71072 4.00579 4.50896 4.61291 4.67213 4.72742 5.02283 5.06552 5.16584 5.29289 5.32939 5.42925 5.44635 5.48188 5.61835 5.64933 5.84514 5.84910 6.10582 6.15144 6.25050 6.28643 6.35234 6.46962 6.58305 6.63004 6.69037 6.79439 6.81449 6.93107 6.96644 7.41405 7.67192 7.74175 7.81707 7.98931 8.31474 8.49638 9.24057 9.85782 10.44029 11.32711 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.017268 B = 0.002150 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.061928 B =13021.750854 C =14022.571939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.402 5.402 3 C 0.069 3.931 4 C -0.118 4.118 5 C 0.266 3.734 6 N -0.270 5.270 7 N -0.052 5.052 8 N -0.233 5.233 9 H 0.473 0.527 10 N -0.310 5.310 11 C -0.098 4.098 12 C -0.038 4.038 13 C 0.584 3.416 14 O -0.546 6.546 15 N -0.709 5.709 16 C 0.155 3.845 17 C -0.140 4.140 18 C 0.149 3.851 19 N -0.593 5.593 20 C -0.252 4.252 21 H 0.065 0.935 22 C 0.003 3.997 23 N -0.904 5.904 24 Si 0.905 3.095 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.279 1.279 28 C 0.174 3.826 29 C -0.147 4.147 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.110 0.890 33 H 0.179 0.821 34 H 0.156 0.844 35 H 0.399 0.601 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.020 0.980 40 H 0.058 0.942 41 H 0.254 0.746 42 H 0.090 0.910 43 H 0.021 0.979 44 H 0.055 0.945 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.677 27.454 -5.056 28.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.073 5.073 3 C -0.073 4.073 4 C -0.129 4.129 5 C -0.014 4.014 6 N -0.143 5.143 7 N -0.048 5.048 8 N -0.079 5.079 9 H 0.327 0.673 10 N -0.162 5.162 11 C -0.125 4.125 12 C -0.150 4.150 13 C 0.371 3.629 14 O -0.425 6.425 15 N -0.359 5.359 16 C 0.052 3.948 17 C -0.180 4.180 18 C 0.021 3.979 19 N -0.316 5.316 20 C -0.382 4.382 21 H 0.083 0.917 22 C -0.196 4.196 23 N -0.548 5.548 24 Si 0.735 3.265 25 H -0.214 1.214 26 H -0.217 1.217 27 H -0.204 1.204 28 C 0.047 3.953 29 C -0.187 4.187 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.128 0.872 33 H 0.197 0.803 34 H 0.173 0.827 35 H 0.233 0.767 36 H 0.100 0.900 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.038 0.962 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.109 0.891 43 H 0.039 0.961 44 H 0.074 0.926 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.943 27.188 -4.914 27.908 hybrid contribution 0.582 0.121 0.594 0.840 sum 4.525 27.309 -4.320 28.016 Atomic orbital electron populations 1.22409 0.75062 1.05785 1.04469 1.43686 1.07426 1.04648 1.51543 1.21809 0.89190 0.92094 1.04194 1.16257 0.87492 0.91283 1.17838 1.22822 0.92230 0.86758 0.99601 1.76113 1.01386 1.18611 1.18239 1.78919 1.21260 0.89867 1.14741 1.47662 1.01370 1.12136 1.46699 0.67319 1.74894 1.03513 1.13964 1.23817 1.21065 0.95294 0.93339 1.02757 1.19955 0.89764 0.88297 1.17019 1.16913 0.86019 0.83091 0.76879 1.90795 1.15993 1.84842 1.50863 1.46045 1.09441 1.06829 1.73541 1.21093 0.98038 0.77458 0.98234 1.22360 0.98265 0.98292 0.99082 1.20842 0.97351 0.90947 0.88725 1.44129 1.52023 1.23132 1.12294 1.19172 0.96923 0.97212 1.24902 0.91713 1.25163 0.94924 0.97812 1.01664 1.69983 1.05253 1.40881 1.38699 0.86256 0.78360 0.81907 0.80002 1.21442 1.21738 1.20415 1.20818 0.90414 0.85540 0.98495 1.22578 1.01059 1.00199 0.94903 0.90019 0.89731 0.87188 0.80338 0.82670 0.76701 0.89968 0.91668 0.92471 0.96214 0.92303 0.93585 0.89150 0.96132 0.92582 0.92735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.51 10.55 59.85 0.63 1.15 16 2 N -0.40 -4.11 3.14 -120.43 -0.38 -4.49 16 3 C 0.07 0.62 11.31 -16.83 -0.19 0.43 16 4 C -0.12 -1.26 6.10 -105.29 -0.64 -1.90 16 5 C 0.27 2.89 8.18 -156.31 -1.28 1.61 16 6 N -0.27 -3.21 12.54 32.16 0.40 -2.80 16 7 N -0.05 -0.51 13.47 60.35 0.81 0.30 16 8 N -0.23 -1.55 7.90 60.35 0.48 -1.08 16 9 H 0.47 0.80 8.96 -340.38 -3.05 -2.25 16 10 N -0.31 -2.76 12.39 32.18 0.40 -2.36 16 11 C -0.10 -1.09 10.28 -39.18 -0.40 -1.49 16 12 C -0.04 -0.46 6.84 -82.38 -0.56 -1.03 16 13 C 0.58 8.62 7.73 -12.83 -0.10 8.52 16 14 O -0.55 -9.60 14.32 5.20 0.07 -9.53 16 15 N -0.71 -9.96 5.06 -55.06 -0.28 -10.24 16 16 C 0.15 2.64 2.38 -67.89 -0.16 2.47 16 17 C -0.14 -2.29 5.55 -26.61 -0.15 -2.44 16 18 C 0.15 3.03 6.51 -3.71 -0.02 3.00 16 19 N -0.59 -14.72 3.00 -172.09 -0.52 -15.24 16 20 C -0.25 -6.86 9.59 -15.06 -0.14 -7.01 16 21 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 22 C 0.00 0.08 5.04 -17.43 -0.09 0.00 16 23 N -0.90 -26.34 11.07 55.49 0.61 -25.73 16 24 Si 0.90 21.71 29.57 -169.99 -5.03 16.68 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 28 C 0.17 4.20 5.28 -3.56 -0.02 4.18 16 29 C -0.15 -2.91 5.65 -26.61 -0.15 -3.06 16 30 H 0.08 0.62 8.14 -51.92 -0.42 0.19 16 31 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.11 1.13 6.28 -51.93 -0.33 0.81 16 33 H 0.18 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.16 1.53 7.41 -52.49 -0.39 1.14 16 35 H 0.40 4.58 7.46 -40.82 -0.30 4.28 16 36 H 0.08 1.55 7.64 -51.93 -0.40 1.15 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 41 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 42 H 0.09 2.46 6.10 -51.93 -0.32 2.14 16 43 H 0.02 0.53 8.14 -51.92 -0.42 0.11 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.05 1.09 8.11 -51.93 -0.42 0.67 16 LS Contribution 375.87 15.07 5.66 5.66 Total: -1.00 -34.65 375.87 -9.58 -44.23 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -8.55 Total: 0.15 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: -3.28 Total: 4.42 kcal Atomic # 7 Polarization: -63.16 SS G_CDS: 1.53 Total: -61.63 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.07 Total: -9.53 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.65 -9.58 -44.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822637010.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.033 kcal (2) G-P(sol) polarization free energy of solvation -34.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds