Wall clock time and date at job start Wed Apr 1 2020 04:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34840 * 125.52357 * 2 1 4 4 C 1.36565 * 108.61158 * 180.02562 * 3 2 1 5 5 C 1.48510 * 126.28191 * 180.02562 * 4 3 2 6 6 N 1.34032 * 126.66893 * 179.71151 * 5 4 3 7 7 N 1.28985 * 107.27061 * 179.86887 * 6 5 4 8 8 N 1.28728 * 108.93548 * 0.39903 * 7 6 5 9 9 H 0.97002 * 125.33961 * 179.76557 * 8 7 6 10 10 N 1.28866 * 109.31774 * 359.74481 * 8 7 6 11 11 C 1.40808 * 107.43435 * 359.77902 * 4 3 2 12 12 C 1.36671 * 107.04918 * 0.35760 * 11 4 3 13 13 C 1.46727 * 126.02392 * 179.90756 * 12 11 4 14 14 O 1.21686 * 120.00250 * 175.18353 * 13 12 11 15 15 N 1.34779 * 119.99807 * 355.18104 * 13 12 11 16 16 C 1.46498 * 120.00022 * 184.39683 * 15 13 12 17 17 C 1.53036 * 109.46075 * 154.99832 * 16 15 13 18 18 C 1.53194 * 109.31401 * 181.38330 * 17 16 15 19 19 N 1.46926 * 108.89512 * 305.29617 * 18 17 16 20 20 C 1.36932 * 120.63327 * 233.67510 * 19 18 17 21 21 H 1.07998 * 120.00250 * 30.62441 * 20 19 18 22 22 C 1.38809 * 120.00191 * 210.62577 * 20 19 18 23 23 N 1.31623 * 119.99872 * 11.53329 * 22 20 19 24 24 Si 1.86803 * 120.00111 * 191.53780 * 22 20 19 25 25 H 1.48507 * 109.46989 * 89.99942 * 24 22 20 26 26 H 1.48497 * 109.47048 * 209.99776 * 24 22 20 27 27 H 1.48499 * 109.47060 * 329.99630 * 24 22 20 28 28 C 1.47210 * 118.55373 * 53.53405 * 19 18 17 29 29 C 1.53040 * 109.46027 * 275.06750 * 16 15 13 30 30 H 1.09009 * 109.46780 * 271.80917 * 1 2 3 31 31 H 1.08992 * 109.47516 * 31.80505 * 1 2 3 32 32 H 1.08999 * 109.47423 * 151.81350 * 1 2 3 33 33 H 1.07998 * 125.69917 * 0.02562 * 3 2 1 34 34 H 1.07994 * 126.47590 * 180.25090 * 11 4 3 35 35 H 0.97000 * 119.99613 * 4.39302 * 15 13 12 36 36 H 1.09000 * 109.45000 * 35.03172 * 16 15 13 37 37 H 1.09004 * 109.49863 * 61.43318 * 17 16 15 38 38 H 1.09003 * 109.50001 * 301.33578 * 17 16 15 39 39 H 1.08996 * 109.58381 * 65.15612 * 18 17 16 40 40 H 1.09004 * 109.58949 * 185.43548 * 18 17 16 41 41 H 0.96997 * 120.00173 * 180.02562 * 23 22 20 42 42 H 1.08999 * 109.53319 * 186.67533 * 28 19 18 43 43 H 1.09008 * 109.67551 * 66.37226 * 28 19 18 44 44 H 1.09001 * 109.49671 * 298.56778 * 29 16 15 45 45 H 1.09001 * 109.49611 * 58.65859 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2485 1.0974 0.0000 4 6 3.5551 0.7002 -0.0006 5 6 4.7442 1.5899 -0.0002 6 7 6.0291 1.2087 0.0046 7 7 6.7466 2.2806 0.0002 8 7 5.9671 3.3050 0.0013 9 1 6.2570 4.2307 0.0020 10 7 4.7411 2.9078 0.0011 11 6 3.5679 -0.7079 0.0042 12 6 2.2650 -1.1205 -0.0006 13 6 1.8006 -2.5123 0.0000 14 8 0.6116 -2.7570 0.0839 15 7 2.6911 -3.5198 -0.0924 16 6 2.2229 -4.9046 -0.1889 17 6 3.2879 -5.7556 -0.8843 18 6 2.7807 -7.1953 -1.0144 19 7 2.3943 -7.6856 0.3156 20 6 2.9113 -8.8551 0.8054 21 1 3.9032 -9.1699 0.5165 22 6 2.1606 -9.6362 1.6732 23 7 0.8814 -9.3809 1.8491 24 14 2.9659 -11.0496 2.5917 25 1 3.4967 -10.5584 3.8888 26 1 1.9616 -12.1150 2.8395 27 1 4.0794 -11.5987 1.7771 28 6 1.4428 -6.8909 1.1094 29 6 1.9650 -5.4547 1.2157 30 1 -0.3633 0.0324 1.0273 31 1 -0.3634 0.8733 -0.5416 32 1 -0.3634 -0.9058 -0.4854 33 1 1.9009 2.1199 0.0004 34 1 4.4421 -1.3419 0.0089 35 1 3.6419 -3.3280 -0.0950 36 1 1.2990 -4.9360 -0.7665 37 1 4.2045 -5.7447 -0.2945 38 1 3.4880 -5.3493 -1.8758 39 1 1.9165 -7.2196 -1.6782 40 1 3.5714 -7.8260 -1.4209 41 1 0.3569 -9.9265 2.4558 42 1 1.3515 -7.3213 2.1067 43 1 0.4682 -6.8902 0.6211 44 1 2.8940 -5.4467 1.7858 45 1 1.2235 -4.8343 1.7189 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822637010.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:20 Heat of formation + Delta-G solvation = 135.217682 kcal Electronic energy + Delta-G solvation = -29371.518212 eV Core-core repulsion = 25234.598797 eV Total energy + Delta-G solvation = -4136.919415 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -45.29898 -42.60696 -40.54961 -38.78057 -36.09246 -35.40297 -34.71890 -34.07282 -33.10707 -31.87030 -31.39223 -30.08264 -27.85559 -26.94810 -25.47726 -24.86854 -24.21869 -23.85679 -22.78617 -21.42740 -21.21854 -20.33276 -19.89073 -18.98090 -18.51116 -18.00042 -17.22580 -16.89508 -16.68940 -16.49131 -15.77261 -15.60756 -15.36972 -15.30519 -15.10924 -14.82066 -14.68799 -14.44105 -14.21748 -13.99891 -13.59819 -13.45386 -13.27176 -13.17730 -12.99121 -12.92373 -12.63823 -12.59319 -12.27261 -12.10669 -12.02796 -12.00259 -11.88213 -11.84541 -11.52926 -11.39001 -10.98115 -10.57765 -10.06560 -9.71923 -9.23896 -8.64862 -7.84833 -5.35522 0.14144 0.43610 0.64500 1.48680 1.49609 1.50570 1.58929 1.61657 2.02254 2.30898 2.37531 2.52550 2.94720 3.27516 3.31785 3.65553 3.74575 3.92463 4.01736 4.05858 4.10490 4.28417 4.35599 4.43410 4.45304 4.50727 4.57629 4.69922 4.77596 4.82471 4.84559 4.89674 5.04581 5.10474 5.11768 5.16389 5.35497 5.44001 5.50992 5.56882 5.66356 5.73690 5.73964 5.78311 6.09271 6.42564 6.56679 7.16206 7.20016 7.28111 7.85716 8.39791 9.21765 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.017268 B = 0.002150 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.061928 B =13021.750854 C =14022.571939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.405 5.405 3 C 0.095 3.905 4 C -0.138 4.138 5 C 0.254 3.746 6 N -0.302 5.302 7 N -0.063 5.063 8 N -0.204 5.204 9 H 0.493 0.507 10 N -0.303 5.303 11 C -0.089 4.089 12 C -0.065 4.065 13 C 0.584 3.416 14 O -0.581 6.581 15 N -0.699 5.699 16 C 0.168 3.832 17 C -0.124 4.124 18 C 0.142 3.858 19 N -0.611 5.611 20 C -0.259 4.259 21 H 0.072 0.928 22 C -0.055 4.055 23 N -0.939 5.939 24 Si 0.971 3.029 25 H -0.286 1.286 26 H -0.297 1.297 27 H -0.265 1.265 28 C 0.183 3.817 29 C -0.131 4.131 30 H 0.085 0.915 31 H 0.122 0.878 32 H 0.084 0.916 33 H 0.214 0.786 34 H 0.163 0.837 35 H 0.414 0.586 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.092 0.908 39 H 0.014 0.986 40 H 0.067 0.933 41 H 0.249 0.751 42 H 0.055 0.945 43 H -0.008 1.008 44 H 0.058 0.942 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.495 30.176 -5.742 31.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.076 5.076 3 C -0.048 4.048 4 C -0.148 4.148 5 C -0.025 4.025 6 N -0.175 5.175 7 N -0.058 5.058 8 N -0.055 5.055 9 H 0.351 0.649 10 N -0.156 5.156 11 C -0.116 4.116 12 C -0.177 4.177 13 C 0.373 3.627 14 O -0.463 6.463 15 N -0.350 5.350 16 C 0.063 3.937 17 C -0.163 4.163 18 C 0.016 3.984 19 N -0.334 5.334 20 C -0.389 4.389 21 H 0.090 0.910 22 C -0.250 4.250 23 N -0.586 5.586 24 Si 0.799 3.201 25 H -0.213 1.213 26 H -0.224 1.224 27 H -0.189 1.189 28 C 0.056 3.944 29 C -0.171 4.171 30 H 0.104 0.896 31 H 0.140 0.860 32 H 0.102 0.898 33 H 0.231 0.769 34 H 0.181 0.819 35 H 0.251 0.749 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.111 0.889 39 H 0.032 0.968 40 H 0.085 0.915 41 H 0.058 0.942 42 H 0.073 0.927 43 H 0.010 0.990 44 H 0.077 0.923 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.824 29.948 -5.627 31.024 hybrid contribution 0.016 -0.555 0.764 0.944 sum 5.840 29.393 -4.863 30.360 Atomic orbital electron populations 1.22514 0.74023 1.06251 1.05049 1.43878 1.08148 1.04383 1.51153 1.22330 0.88418 0.92948 1.01104 1.16385 0.88295 0.91097 1.19016 1.22872 0.92049 0.87354 1.00271 1.76086 1.02023 1.19721 1.19639 1.78861 1.21407 0.90167 1.15329 1.47735 1.00584 1.12827 1.44343 0.64877 1.74852 1.04154 1.13124 1.23493 1.21216 0.95030 0.94046 1.01307 1.19569 0.90545 0.87513 1.20075 1.17256 0.85457 0.84197 0.75824 1.90784 1.17505 1.85525 1.52467 1.45735 1.10276 1.05415 1.73552 1.20690 0.97851 0.79247 0.95887 1.22165 0.97713 0.95291 1.01146 1.21037 0.97398 0.93514 0.86447 1.44374 1.51909 1.22969 1.14173 1.19551 0.97179 0.97655 1.24505 0.91012 1.25963 0.95412 1.00576 1.03008 1.70164 1.06698 1.42081 1.39610 0.85216 0.77495 0.78711 0.78709 1.21285 1.22382 1.18932 1.20518 0.89668 0.87954 0.96211 1.22314 1.00542 0.97193 0.97042 0.89624 0.85981 0.89752 0.76921 0.81924 0.74892 0.91905 0.90711 0.88922 0.96825 0.91461 0.94208 0.92677 0.99021 0.92276 0.93445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.90 10.55 127.77 1.35 2.25 16 2 N -0.40 -7.49 3.14 -534.92 -1.68 -9.17 16 3 C 0.09 1.40 11.31 83.84 0.95 2.35 16 4 C -0.14 -2.63 6.10 -20.30 -0.12 -2.75 16 5 C 0.25 4.98 8.18 137.41 1.12 6.10 16 6 N -0.30 -6.69 12.54 -52.16 -0.65 -7.35 16 7 N -0.06 -1.10 13.47 37.02 0.50 -0.60 16 8 N -0.20 -2.19 7.90 37.02 0.29 -1.90 16 9 H 0.49 0.23 8.96 -347.55 -3.12 -2.89 16 10 N -0.30 -4.54 12.39 -52.11 -0.65 -5.19 16 11 C -0.09 -1.83 10.28 22.53 0.23 -1.60 16 12 C -0.07 -1.52 6.84 40.08 0.27 -1.25 16 13 C 0.58 17.05 7.73 86.46 0.67 17.71 16 14 O -0.58 -20.89 14.32 -4.30 -0.06 -20.95 16 15 N -0.70 -18.95 5.06 -446.34 -2.26 -21.21 16 16 C 0.17 5.65 2.38 45.02 0.11 5.76 16 17 C -0.12 -3.82 5.55 30.67 0.17 -3.65 16 18 C 0.14 5.70 6.51 86.36 0.56 6.26 16 19 N -0.61 -30.84 3.00 -698.37 -2.09 -32.94 16 20 C -0.26 -14.20 9.59 84.03 0.81 -13.39 16 21 H 0.07 3.77 7.85 -2.91 -0.02 3.75 16 22 C -0.05 -3.09 5.04 84.86 0.43 -2.66 16 23 N -0.94 -56.89 11.07 21.65 0.24 -56.65 16 24 Si 0.97 45.29 29.57 68.60 2.03 47.32 16 25 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 26 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 27 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 28 C 0.18 9.26 5.28 86.31 0.46 9.72 16 29 C -0.13 -5.28 5.65 30.67 0.17 -5.11 16 30 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.08 1.74 6.28 -2.39 -0.01 1.72 16 33 H 0.21 1.55 8.06 -2.91 -0.02 1.53 16 34 H 0.16 2.94 7.41 -2.91 -0.02 2.92 16 35 H 0.41 8.73 7.46 -92.71 -0.69 8.04 16 36 H 0.06 2.41 7.64 -2.39 -0.02 2.39 16 37 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.07 2.57 7.93 -2.39 -0.02 2.55 16 41 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 42 H 0.05 3.16 6.10 -2.39 -0.01 3.15 16 43 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 44 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 45 H 0.05 1.96 8.11 -2.39 -0.02 1.94 16 Total: -1.00 -77.92 375.87 0.09 -77.83 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -2.75 Total: 11.06 kcal Atomic # 6 Polarization: 12.58 SS G_CDS: 7.17 Total: 19.75 kcal Atomic # 7 Polarization: -128.70 SS G_CDS: -6.30 Total: -135.00 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.06 Total: -20.95 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -77.92 0.09 -77.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822637010.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.052 kcal (2) G-P(sol) polarization free energy of solvation -77.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds