Wall clock time and date at job start Wed Apr 1 2020 04:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45202 * 109.47323 * 2 1 4 4 C 1.34230 * 117.00282 * 179.97438 * 3 2 1 5 5 O 1.20835 * 119.99507 * 0.02562 * 4 3 2 6 6 C 1.50692 * 120.00116 * 180.02562 * 4 3 2 7 7 H 1.08996 * 110.89102 * 56.11779 * 6 4 3 8 8 C 1.55155 * 111.00413 * 292.19651 * 6 4 3 9 9 C 1.54316 * 102.86554 * 206.23082 * 8 6 4 10 10 N 1.47014 * 107.27385 * 22.52663 * 9 8 6 11 11 C 1.34785 * 125.64773 * 180.96855 * 10 9 8 12 12 O 1.21280 * 120.00022 * 179.69132 * 11 10 9 13 13 C 1.50693 * 119.99909 * 359.69353 * 11 10 9 14 14 C 1.52997 * 109.47043 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.46975 * 304.99152 * 14 13 11 16 16 C 1.50701 * 109.47516 * 64.99761 * 14 13 11 17 17 H 1.07991 * 119.99887 * 234.68667 * 16 14 13 18 18 C 1.37872 * 119.99862 * 54.68506 * 16 14 13 19 19 N 1.31521 * 120.00339 * 4.67319 * 18 16 14 20 20 Si 1.86792 * 120.00069 * 184.67772 * 18 16 14 21 21 H 1.48501 * 109.47404 * 59.99557 * 20 18 16 22 22 H 1.48501 * 109.47267 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46920 * 299.99779 * 20 18 16 24 24 C 1.50704 * 109.47050 * 185.00149 * 14 13 11 25 25 C 1.38233 * 120.00034 * 151.59366 * 24 14 13 26 26 C 1.38238 * 119.99923 * 179.97438 * 25 24 14 27 27 C 1.38237 * 119.99680 * 359.97438 * 26 25 24 28 28 C 1.38232 * 120.00508 * 0.27604 * 27 26 25 29 29 C 1.38234 * 119.99701 * 331.56727 * 24 14 13 30 30 C 1.47426 * 108.70486 * 0.70371 * 10 9 8 31 31 H 1.09003 * 109.47588 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46705 * 299.99484 * 1 2 3 33 33 H 1.09002 * 109.47213 * 59.99276 * 1 2 3 34 34 H 1.09006 * 109.46705 * 240.00516 * 2 1 3 35 35 H 1.08994 * 109.47391 * 120.00457 * 2 1 3 36 36 H 1.09003 * 110.71996 * 324.78965 * 8 6 4 37 37 H 1.09001 * 110.71968 * 88.06238 * 8 6 4 38 38 H 1.08994 * 109.98279 * 263.04677 * 9 8 6 39 39 H 1.08998 * 109.77304 * 141.88596 * 9 8 6 40 40 H 1.08996 * 109.47529 * 59.99739 * 13 11 10 41 41 H 1.09004 * 109.47039 * 299.99960 * 13 11 10 42 42 H 0.97001 * 120.00627 * 179.97438 * 19 18 16 43 43 H 1.07998 * 120.00261 * 359.97438 * 25 24 14 44 44 H 1.08000 * 119.99817 * 180.02562 * 26 25 24 45 45 H 1.08003 * 119.99434 * 180.02562 * 27 26 25 46 46 H 1.08000 * 120.00324 * 179.72436 * 28 27 26 47 47 H 1.08000 * 120.00367 * 0.02562 * 29 24 14 48 48 H 1.09005 * 110.36607 * 94.93587 * 30 10 9 49 49 H 1.09001 * 110.36573 * 217.25901 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9207 2.9373 0.0012 7 1 3.5444 3.5132 0.8466 8 6 3.6281 3.6608 -1.3399 9 6 4.7826 4.6800 -1.4395 10 7 5.8799 4.1802 -0.5983 11 6 7.0631 4.7956 -0.4033 12 8 7.8967 4.2920 0.3195 13 6 7.3501 6.1095 -1.0832 14 6 8.7510 6.5882 -0.6970 15 1 8.8328 6.6339 0.3890 16 6 9.7775 5.6267 -1.2381 17 1 10.5006 5.1783 -0.5732 18 6 9.7932 5.3195 -2.5821 19 7 8.9735 5.9340 -3.4068 20 14 10.9788 4.0304 -3.2316 21 1 10.7070 2.7293 -2.5694 22 1 10.7980 3.8860 -4.6985 23 1 12.3736 4.4507 -2.9433 24 6 8.9912 7.9584 -1.2768 25 6 9.8533 8.8348 -0.6449 26 6 10.0741 10.0914 -1.1770 27 6 9.4331 10.4712 -2.3414 28 6 8.5670 9.5967 -2.9705 29 6 8.3498 8.3384 -2.4409 30 6 5.4693 2.8977 0.0016 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 3.6571 2.9572 -2.1719 37 1 2.6669 4.1732 -1.2999 38 1 4.4521 5.6536 -1.0779 39 1 5.1156 4.7599 -2.4743 40 1 6.6136 6.8494 -0.7697 41 1 7.2963 5.9787 -2.1640 42 1 8.9848 5.7181 -4.3524 43 1 10.3545 8.5379 0.2646 44 1 10.7480 10.7761 -0.6835 45 1 9.6059 11.4529 -2.7574 46 1 8.0627 9.8951 -3.8778 47 1 7.6762 7.6536 -2.9346 48 1 5.8276 2.0642 -0.6027 49 1 5.8465 2.8178 1.0212 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000834866571.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:48 Heat of formation + Delta-G solvation = -93.384392 kcal Electronic energy + Delta-G solvation = -30398.923430 eV Core-core repulsion = 26291.045926 eV Total energy + Delta-G solvation = -4107.877504 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.88276 -39.34350 -38.23226 -37.15027 -36.46060 -34.19754 -32.34133 -31.47178 -31.00661 -29.81614 -29.24976 -28.32501 -26.15384 -24.62303 -23.22345 -22.33558 -22.26079 -21.36024 -20.45721 -19.74620 -18.62608 -17.94255 -16.96086 -16.81326 -16.47580 -16.00476 -15.61757 -15.06932 -14.96656 -14.53832 -14.32043 -13.90581 -13.80407 -13.62479 -13.59464 -13.38020 -13.07062 -12.94009 -12.42373 -12.30308 -12.21515 -12.19204 -11.96574 -11.81961 -11.58982 -11.46589 -11.38357 -11.30749 -11.01389 -10.87056 -10.81396 -10.77573 -10.51663 -10.40777 -10.15254 -9.92925 -9.28979 -9.18204 -8.81227 -8.40623 -8.12853 -7.79386 -7.42961 -5.96265 -4.05829 1.99640 2.33902 2.50748 2.59388 3.35510 3.37545 3.45380 3.53571 3.67994 4.22320 4.33584 4.45747 4.58072 4.60653 4.66523 4.89135 4.93311 4.98458 5.17738 5.22214 5.26637 5.36026 5.42073 5.57394 5.62315 5.64487 5.82306 5.82535 5.90675 5.94986 6.00009 6.02749 6.07419 6.21335 6.38089 6.45044 6.58539 6.68007 6.78637 6.78929 7.14650 7.17284 7.27571 7.47842 7.54615 7.55390 7.69943 7.94964 8.07077 8.18879 8.19252 8.35989 8.90505 9.14059 9.57533 10.97809 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014822 B = 0.002681 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.690177 B =10441.862639 C =11378.973115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.357 6.357 4 C 0.475 3.525 5 O -0.501 6.501 6 C -0.100 4.100 7 H 0.122 0.878 8 C -0.116 4.116 9 C 0.106 3.894 10 N -0.635 5.635 11 C 0.542 3.458 12 O -0.521 6.521 13 C -0.132 4.132 14 C 0.087 3.913 15 H 0.037 0.963 16 C -0.471 4.471 17 H 0.059 0.941 18 C 0.061 3.939 19 N -0.891 5.891 20 Si 0.890 3.110 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.278 1.278 24 C -0.028 4.028 25 C -0.131 4.131 26 C -0.142 4.142 27 C -0.154 4.154 28 C -0.143 4.143 29 C -0.068 4.068 30 C 0.125 3.875 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.053 0.947 41 H 0.133 0.867 42 H 0.261 0.739 43 H 0.105 0.895 44 H 0.101 0.899 45 H 0.099 0.901 46 H 0.101 0.899 47 H 0.140 0.860 48 H 0.075 0.925 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.807 -2.946 2.805 18.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.274 6.274 4 C 0.317 3.683 5 O -0.387 6.387 6 C -0.120 4.120 7 H 0.139 0.861 8 C -0.154 4.154 9 C -0.018 4.018 10 N -0.374 5.374 11 C 0.333 3.667 12 O -0.394 6.394 13 C -0.171 4.171 14 C 0.068 3.932 15 H 0.056 0.944 16 C -0.508 4.508 17 H 0.077 0.923 18 C -0.139 4.139 19 N -0.530 5.530 20 Si 0.719 3.281 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.204 1.204 24 C -0.028 4.028 25 C -0.149 4.149 26 C -0.160 4.160 27 C -0.172 4.172 28 C -0.162 4.162 29 C -0.087 4.087 30 C 0.002 3.998 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.112 0.888 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.071 0.929 41 H 0.151 0.849 42 H 0.071 0.929 43 H 0.123 0.877 44 H 0.119 0.881 45 H 0.117 0.883 46 H 0.119 0.881 47 H 0.157 0.843 48 H 0.094 0.906 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -17.054 -3.506 3.016 17.670 hybrid contribution 0.761 -0.968 -0.667 1.400 sum -16.293 -4.474 2.349 17.058 Atomic orbital electron populations 1.21806 0.92550 1.02975 1.03581 1.23044 0.95388 0.80232 1.02720 1.86505 1.24442 1.32381 1.84044 1.23359 0.80535 0.92151 0.72224 1.90705 1.60367 1.42962 1.44711 1.22224 0.97294 0.90398 1.02072 0.86059 1.22644 0.99588 0.98156 0.95005 1.21922 0.86386 0.96973 0.96501 1.48706 1.16362 1.22528 1.49780 1.20975 0.78180 0.87119 0.80425 1.90635 1.44041 1.66733 1.38018 1.21926 0.99261 0.90735 1.05227 1.17647 0.91670 0.89021 0.94862 0.94435 1.20947 1.14780 1.22195 0.92886 0.92315 1.24869 0.96119 0.96119 0.96786 1.69653 1.38332 1.41385 1.03658 0.86656 0.81609 0.82503 0.77374 1.20318 1.21395 1.20367 1.20336 0.93355 0.94469 0.94662 1.20895 0.99765 0.93778 1.00478 1.20797 1.01179 0.96822 0.97192 1.20764 1.00174 0.99049 0.97216 1.21046 1.00124 0.95280 0.99723 1.21359 0.99580 0.93430 0.94286 1.21864 0.89208 0.88202 1.00568 0.90256 0.91442 0.91396 0.91164 0.91190 0.90197 0.88836 0.91031 0.90625 0.92882 0.84924 0.92901 0.87667 0.88111 0.88323 0.88096 0.84266 0.90643 0.89990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 10.29 37.16 0.38 -0.45 16 2 C 0.06 0.50 6.19 37.16 0.23 0.73 16 3 O -0.36 -3.68 10.22 -39.26 -0.40 -4.08 16 4 C 0.48 5.78 7.27 36.00 0.26 6.04 16 5 O -0.50 -7.66 15.47 -18.76 -0.29 -7.95 16 6 C -0.10 -1.12 3.54 -89.63 -0.32 -1.44 16 7 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 8 C -0.12 -1.13 6.41 -24.90 -0.16 -1.29 16 9 C 0.11 1.33 6.48 -3.07 -0.02 1.31 16 10 N -0.63 -10.83 3.33 -170.53 -0.57 -11.40 16 11 C 0.54 11.69 7.60 -10.99 -0.08 11.60 16 12 O -0.52 -13.24 15.24 5.56 0.08 -13.15 16 13 C -0.13 -2.80 3.27 -27.89 -0.09 -2.89 16 14 C 0.09 2.10 1.97 -92.92 -0.18 1.91 16 15 H 0.04 0.92 7.91 -51.93 -0.41 0.51 16 16 C -0.47 -12.72 7.27 -34.44 -0.25 -12.97 16 17 H 0.06 1.68 7.82 -52.49 -0.41 1.27 16 18 C 0.06 1.60 5.12 -17.82 -0.09 1.51 16 19 N -0.89 -22.66 7.97 55.43 0.44 -22.22 16 20 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 21 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 24 C -0.03 -0.63 4.69 -104.62 -0.49 -1.12 16 25 C -0.13 -2.79 9.71 -39.58 -0.38 -3.18 16 26 C -0.14 -2.72 10.05 -39.58 -0.40 -3.12 16 27 C -0.15 -2.87 10.05 -39.58 -0.40 -3.27 16 28 C -0.14 -2.82 10.05 -39.58 -0.40 -3.21 16 29 C -0.07 -1.48 7.46 -39.58 -0.30 -1.77 16 30 C 0.12 1.93 6.03 -2.53 -0.02 1.91 16 31 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 36 H 0.08 0.79 8.03 -51.93 -0.42 0.37 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.13 2.99 4.70 -51.93 -0.24 2.74 16 42 H 0.26 6.52 8.31 -40.82 -0.34 6.18 16 43 H 0.11 2.14 8.06 -52.49 -0.42 1.71 16 44 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 45 H 0.10 1.56 8.06 -52.48 -0.42 1.14 16 46 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 47 H 0.14 3.07 5.17 -52.49 -0.27 2.80 16 48 H 0.08 1.29 7.40 -51.93 -0.38 0.91 16 49 H 0.08 1.33 8.04 -51.93 -0.42 0.91 16 LS Contribution 397.54 15.07 5.99 5.99 Total: -1.00 -31.59 397.54 -10.07 -41.66 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -7.61 Total: 4.08 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: -2.70 Total: -9.69 kcal Atomic # 7 Polarization: -33.49 SS G_CDS: -0.13 Total: -33.62 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.61 Total: -25.18 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.59 -10.07 -41.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834866571.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.724 kcal (2) G-P(sol) polarization free energy of solvation -31.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds