Wall clock time and date at job start Wed Apr 1 2020 04:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45202 * 109.47323 * 2 1 4 4 C 1.34230 * 117.00282 * 179.97438 * 3 2 1 5 5 O 1.20835 * 119.99507 * 0.02562 * 4 3 2 6 6 C 1.50692 * 120.00116 * 180.02562 * 4 3 2 7 7 H 1.08996 * 110.89102 * 56.11779 * 6 4 3 8 8 C 1.55155 * 111.00413 * 292.19651 * 6 4 3 9 9 C 1.54316 * 102.86554 * 206.23082 * 8 6 4 10 10 N 1.47014 * 107.27385 * 22.52663 * 9 8 6 11 11 C 1.34785 * 125.64773 * 180.96855 * 10 9 8 12 12 O 1.21280 * 120.00022 * 179.69132 * 11 10 9 13 13 C 1.50693 * 119.99909 * 359.69353 * 11 10 9 14 14 C 1.52997 * 109.47043 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.46975 * 304.99152 * 14 13 11 16 16 C 1.50701 * 109.47516 * 64.99761 * 14 13 11 17 17 H 1.07991 * 119.99887 * 234.68667 * 16 14 13 18 18 C 1.37872 * 119.99862 * 54.68506 * 16 14 13 19 19 N 1.31521 * 120.00339 * 4.67319 * 18 16 14 20 20 Si 1.86792 * 120.00069 * 184.67772 * 18 16 14 21 21 H 1.48501 * 109.47404 * 59.99557 * 20 18 16 22 22 H 1.48501 * 109.47267 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46920 * 299.99779 * 20 18 16 24 24 C 1.50704 * 109.47050 * 185.00149 * 14 13 11 25 25 C 1.38233 * 120.00034 * 151.59366 * 24 14 13 26 26 C 1.38238 * 119.99923 * 179.97438 * 25 24 14 27 27 C 1.38237 * 119.99680 * 359.97438 * 26 25 24 28 28 C 1.38232 * 120.00508 * 0.27604 * 27 26 25 29 29 C 1.38234 * 119.99701 * 331.56727 * 24 14 13 30 30 C 1.47426 * 108.70486 * 0.70371 * 10 9 8 31 31 H 1.09003 * 109.47588 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46705 * 299.99484 * 1 2 3 33 33 H 1.09002 * 109.47213 * 59.99276 * 1 2 3 34 34 H 1.09006 * 109.46705 * 240.00516 * 2 1 3 35 35 H 1.08994 * 109.47391 * 120.00457 * 2 1 3 36 36 H 1.09003 * 110.71996 * 324.78965 * 8 6 4 37 37 H 1.09001 * 110.71968 * 88.06238 * 8 6 4 38 38 H 1.08994 * 109.98279 * 263.04677 * 9 8 6 39 39 H 1.08998 * 109.77304 * 141.88596 * 9 8 6 40 40 H 1.08996 * 109.47529 * 59.99739 * 13 11 10 41 41 H 1.09004 * 109.47039 * 299.99960 * 13 11 10 42 42 H 0.97001 * 120.00627 * 179.97438 * 19 18 16 43 43 H 1.07998 * 120.00261 * 359.97438 * 25 24 14 44 44 H 1.08000 * 119.99817 * 180.02562 * 26 25 24 45 45 H 1.08003 * 119.99434 * 180.02562 * 27 26 25 46 46 H 1.08000 * 120.00324 * 179.72436 * 28 27 26 47 47 H 1.08000 * 120.00367 * 0.02562 * 29 24 14 48 48 H 1.09005 * 110.36607 * 94.93587 * 30 10 9 49 49 H 1.09001 * 110.36573 * 217.25901 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9207 2.9373 0.0012 7 1 3.5444 3.5132 0.8466 8 6 3.6281 3.6608 -1.3399 9 6 4.7826 4.6800 -1.4395 10 7 5.8799 4.1802 -0.5983 11 6 7.0631 4.7956 -0.4033 12 8 7.8967 4.2920 0.3195 13 6 7.3501 6.1095 -1.0832 14 6 8.7510 6.5882 -0.6970 15 1 8.8328 6.6339 0.3890 16 6 9.7775 5.6267 -1.2381 17 1 10.5006 5.1783 -0.5732 18 6 9.7932 5.3195 -2.5821 19 7 8.9735 5.9340 -3.4068 20 14 10.9788 4.0304 -3.2316 21 1 10.7070 2.7293 -2.5694 22 1 10.7980 3.8860 -4.6985 23 1 12.3736 4.4507 -2.9433 24 6 8.9912 7.9584 -1.2768 25 6 9.8533 8.8348 -0.6449 26 6 10.0741 10.0914 -1.1770 27 6 9.4331 10.4712 -2.3414 28 6 8.5670 9.5967 -2.9705 29 6 8.3498 8.3384 -2.4409 30 6 5.4693 2.8977 0.0016 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 3.6571 2.9572 -2.1719 37 1 2.6669 4.1732 -1.2999 38 1 4.4521 5.6536 -1.0779 39 1 5.1156 4.7599 -2.4743 40 1 6.6136 6.8494 -0.7697 41 1 7.2963 5.9787 -2.1640 42 1 8.9848 5.7181 -4.3524 43 1 10.3545 8.5379 0.2646 44 1 10.7480 10.7761 -0.6835 45 1 9.6059 11.4529 -2.7574 46 1 8.0627 9.8951 -3.8778 47 1 7.6762 7.6536 -2.9346 48 1 5.8276 2.0642 -0.6027 49 1 5.8465 2.8178 1.0212 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000834866571.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:46 Heat of formation + Delta-G solvation = -109.378441 kcal Electronic energy + Delta-G solvation = -30399.616984 eV Core-core repulsion = 26291.045926 eV Total energy + Delta-G solvation = -4108.571058 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.88925 -40.79453 -39.75603 -38.42498 -37.57674 -36.02268 -33.38188 -32.92019 -32.30011 -31.38360 -30.43045 -29.82794 -27.91154 -25.90033 -24.39481 -23.73319 -23.18743 -22.90417 -21.56667 -21.24332 -20.08508 -18.94932 -18.40123 -17.98612 -17.81368 -17.37958 -17.13259 -16.86939 -16.22944 -16.07219 -15.52377 -15.30062 -15.20712 -15.05398 -14.71827 -14.47388 -14.42602 -13.92986 -13.74279 -13.66502 -13.56651 -13.29763 -13.21937 -13.09186 -12.98234 -12.86277 -12.79812 -12.71152 -12.52980 -12.37672 -12.23147 -11.92119 -11.85038 -11.68835 -11.54388 -11.49800 -11.07441 -11.03936 -10.64785 -10.32491 -9.55776 -9.37583 -9.10292 -7.95554 -6.10828 0.91082 1.02244 1.03515 1.34570 1.36036 1.43800 1.44492 1.95362 2.26809 2.43682 3.16303 3.18822 3.39447 3.41825 3.73770 4.00197 4.03219 4.08349 4.16054 4.22428 4.27159 4.35408 4.35953 4.44107 4.53236 4.59830 4.69343 4.75915 4.81895 4.83046 4.85824 4.91240 4.93116 4.94633 5.09755 5.11756 5.14527 5.16625 5.32377 5.40893 5.50478 5.55810 5.63838 5.69744 5.89862 5.96992 6.11467 6.36312 6.43643 6.59863 6.61194 6.66875 6.83119 7.48545 7.51901 8.93274 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014822 B = 0.002681 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.690177 B =10441.862639 C =11378.973115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.051 3.949 3 O -0.349 6.349 4 C 0.481 3.519 5 O -0.540 6.540 6 C -0.086 4.086 7 H 0.150 0.850 8 C -0.101 4.101 9 C 0.096 3.904 10 N -0.632 5.632 11 C 0.533 3.467 12 O -0.575 6.575 13 C -0.117 4.117 14 C 0.088 3.912 15 H 0.013 0.987 16 C -0.493 4.493 17 H 0.024 0.976 18 C 0.037 3.963 19 N -0.882 5.882 20 Si 0.924 3.076 21 H -0.295 1.295 22 H -0.272 1.272 23 H -0.281 1.281 24 C -0.052 4.052 25 C -0.151 4.151 26 C -0.140 4.140 27 C -0.148 4.148 28 C -0.145 4.145 29 C -0.079 4.079 30 C 0.120 3.880 31 H 0.097 0.903 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.136 0.864 38 H 0.097 0.903 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.125 0.875 42 H 0.263 0.737 43 H 0.101 0.899 44 H 0.131 0.869 45 H 0.136 0.864 46 H 0.128 0.872 47 H 0.132 0.868 48 H 0.052 0.948 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.530 -0.959 1.338 20.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 O -0.265 6.265 4 C 0.325 3.675 5 O -0.430 6.430 6 C -0.106 4.106 7 H 0.168 0.832 8 C -0.139 4.139 9 C -0.026 4.026 10 N -0.368 5.368 11 C 0.325 3.675 12 O -0.453 6.453 13 C -0.157 4.157 14 C 0.068 3.932 15 H 0.032 0.968 16 C -0.531 4.531 17 H 0.043 0.957 18 C -0.163 4.163 19 N -0.521 5.521 20 Si 0.753 3.247 21 H -0.221 1.221 22 H -0.197 1.197 23 H -0.207 1.207 24 C -0.053 4.053 25 C -0.170 4.170 26 C -0.158 4.158 27 C -0.166 4.166 28 C -0.164 4.164 29 C -0.098 4.098 30 C -0.004 4.004 31 H 0.116 0.884 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.154 0.846 38 H 0.115 0.885 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.143 0.857 42 H 0.073 0.927 43 H 0.119 0.881 44 H 0.149 0.851 45 H 0.154 0.846 46 H 0.146 0.854 47 H 0.150 0.850 48 H 0.070 0.930 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -19.855 -1.500 1.510 19.969 hybrid contribution 1.570 -1.580 -0.186 2.235 sum -18.285 -3.081 1.325 18.590 Atomic orbital electron populations 1.21820 0.90019 1.04360 1.03981 1.23334 0.97308 0.79144 1.02486 1.86500 1.22974 1.33681 1.83377 1.23442 0.80981 0.91892 0.71161 1.90703 1.61373 1.44212 1.46677 1.22129 0.93585 0.90589 1.04296 0.83233 1.22681 1.00136 0.97319 0.93748 1.22288 0.85755 0.99041 0.95523 1.48622 1.16091 1.22595 1.49528 1.21066 0.78983 0.87423 0.80018 1.90603 1.46257 1.68011 1.40434 1.21717 0.98360 0.91297 1.04336 1.17537 0.92478 0.89768 0.93380 0.96812 1.20923 1.15415 1.23804 0.92982 0.95715 1.25172 0.97220 0.97068 0.96812 1.69722 1.37904 1.40978 1.03501 0.86149 0.80514 0.80497 0.77578 1.22134 1.19708 1.20678 1.20279 0.95020 0.94140 0.95822 1.21062 1.00022 0.95014 1.00859 1.21145 1.01156 0.96109 0.97400 1.21202 0.98627 1.00329 0.96402 1.21370 1.00110 0.94403 1.00473 1.21319 0.99852 0.94562 0.94029 1.21851 0.92797 0.86701 0.99012 0.88406 0.91031 0.90933 0.91503 0.91513 0.90230 0.84604 0.88510 0.91044 0.90292 0.85736 0.92744 0.88113 0.85117 0.84610 0.85406 0.85029 0.92965 0.91611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 10.29 71.98 0.74 -0.50 16 2 C 0.05 0.77 6.19 71.98 0.45 1.21 16 3 O -0.35 -6.50 10.22 -51.42 -0.53 -7.03 16 4 C 0.48 11.23 7.27 71.23 0.52 11.75 16 5 O -0.54 -16.81 15.47 21.94 0.34 -16.47 16 6 C -0.09 -1.79 3.54 -10.15 -0.04 -1.83 16 7 H 0.15 2.33 8.14 -2.39 -0.02 2.31 16 8 C -0.10 -1.67 6.41 31.78 0.20 -1.46 16 9 C 0.10 2.23 6.48 86.73 0.56 2.79 16 10 N -0.63 -21.82 3.33 -811.83 -2.70 -24.53 16 11 C 0.53 23.98 7.60 87.65 0.67 24.65 16 12 O -0.57 -31.27 15.24 -3.03 -0.05 -31.32 16 13 C -0.12 -5.11 3.27 29.85 0.10 -5.01 16 14 C 0.09 4.40 1.97 -12.29 -0.02 4.38 16 15 H 0.01 0.72 7.91 -2.39 -0.02 0.70 16 16 C -0.49 -28.09 7.27 25.60 0.19 -27.90 16 17 H 0.02 1.52 7.82 -2.92 -0.02 1.50 16 18 C 0.04 2.00 5.12 84.65 0.43 2.44 16 19 N -0.88 -45.00 7.97 21.45 0.17 -44.83 16 20 Si 0.92 45.58 29.54 68.60 2.03 47.61 16 21 H -0.29 -15.26 7.11 99.48 0.71 -14.55 16 22 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 23 H -0.28 -13.89 7.11 99.48 0.71 -13.19 16 24 C -0.05 -2.40 4.69 -19.87 -0.09 -2.49 16 25 C -0.15 -6.46 9.71 22.27 0.22 -6.25 16 26 C -0.14 -5.04 10.05 22.27 0.22 -4.81 16 27 C -0.15 -4.97 10.05 22.27 0.22 -4.75 16 28 C -0.15 -5.29 10.05 22.27 0.22 -5.06 16 29 C -0.08 -3.36 7.46 22.27 0.17 -3.19 16 30 C 0.12 3.81 6.03 86.85 0.52 4.34 16 31 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 33 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.07 1.06 8.14 -2.38 -0.02 1.05 16 35 H 0.07 1.06 8.13 -2.39 -0.02 1.04 16 36 H 0.08 1.36 8.03 -2.39 -0.02 1.34 16 37 H 0.14 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.08 2.94 8.14 -2.39 -0.02 2.92 16 41 H 0.13 5.67 4.70 -2.38 -0.01 5.66 16 42 H 0.26 12.96 8.31 -92.71 -0.77 12.19 16 43 H 0.10 4.24 8.06 -2.91 -0.02 4.22 16 44 H 0.13 3.85 8.06 -2.91 -0.02 3.83 16 45 H 0.14 3.58 8.06 -2.91 -0.02 3.55 16 46 H 0.13 3.91 8.06 -2.91 -0.02 3.88 16 47 H 0.13 5.71 5.17 -2.91 -0.02 5.69 16 48 H 0.05 1.90 7.40 -2.38 -0.02 1.88 16 49 H 0.07 2.28 8.04 -2.39 -0.02 2.26 16 Total: -1.00 -73.06 397.54 5.48 -67.58 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: 0.94 Total: 20.69 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: 5.28 Total: -11.70 kcal Atomic # 7 Polarization: -66.83 SS G_CDS: -2.53 Total: -69.36 kcal Atomic # 8 Polarization: -54.59 SS G_CDS: -0.23 Total: -54.82 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -73.06 5.48 -67.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834866571.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.798 kcal (2) G-P(sol) polarization free energy of solvation -73.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds