Wall clock time and date at job start Wed Apr 1 2020 04:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45198 * 109.47485 * 2 1 4 4 C 1.34231 * 116.99805 * 180.02562 * 3 2 1 5 5 O 1.20822 * 120.00368 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.99614 * 179.97438 * 4 3 2 7 7 H 1.09000 * 110.88622 * 56.11952 * 6 4 3 8 8 C 1.55160 * 111.00396 * 292.19638 * 6 4 3 9 9 C 1.54317 * 102.85964 * 206.22849 * 8 6 4 10 10 N 1.47021 * 107.27548 * 22.52909 * 9 8 6 11 11 C 1.34777 * 125.64611 * 180.96409 * 10 9 8 12 12 O 1.21284 * 120.00173 * 179.68879 * 11 10 9 13 13 C 1.50699 * 120.00088 * 359.69313 * 11 10 9 14 14 C 1.53005 * 109.47086 * 179.97438 * 13 11 10 15 15 H 1.08995 * 109.46604 * 55.00342 * 14 13 11 16 16 C 1.50697 * 109.47472 * 295.00051 * 14 13 11 17 17 H 1.08005 * 120.00093 * 333.06036 * 16 14 13 18 18 C 1.37873 * 119.99807 * 153.05673 * 16 14 13 19 19 N 1.31506 * 120.00221 * 354.07308 * 18 16 14 20 20 Si 1.86809 * 119.99772 * 174.34771 * 18 16 14 21 21 H 1.48494 * 109.47093 * 179.72361 * 20 18 16 22 22 H 1.48500 * 109.46985 * 299.72789 * 20 18 16 23 23 H 1.48502 * 109.46781 * 59.72429 * 20 18 16 24 24 C 1.50703 * 109.46954 * 174.99742 * 14 13 11 25 25 C 1.38244 * 119.99650 * 63.72344 * 24 14 13 26 26 C 1.38234 * 119.99347 * 179.76337 * 25 24 14 27 27 C 1.38229 * 120.00597 * 0.51004 * 26 25 24 28 28 C 1.38234 * 119.99654 * 359.74316 * 27 26 25 29 29 C 1.38230 * 120.00163 * 243.99325 * 24 14 13 30 30 C 1.47424 * 108.70523 * 0.69961 * 10 9 8 31 31 H 1.09001 * 109.47282 * 300.00138 * 1 2 3 32 32 H 1.09003 * 109.47345 * 59.99851 * 1 2 3 33 33 H 1.08997 * 109.47654 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.46928 * 239.99452 * 2 1 3 35 35 H 1.09006 * 109.46920 * 120.00430 * 2 1 3 36 36 H 1.08995 * 110.71927 * 324.78712 * 8 6 4 37 37 H 1.08992 * 110.71978 * 88.06265 * 8 6 4 38 38 H 1.08997 * 109.98654 * 263.04822 * 9 8 6 39 39 H 1.08999 * 109.76905 * 141.88747 * 9 8 6 40 40 H 1.09000 * 109.47018 * 59.99717 * 13 11 10 41 41 H 1.08997 * 109.47391 * 299.99603 * 13 11 10 42 42 H 0.97007 * 120.00260 * 179.97438 * 19 18 16 43 43 H 1.07999 * 119.99710 * 359.97438 * 25 24 14 44 44 H 1.08000 * 119.99501 * 180.22913 * 26 25 24 45 45 H 1.07998 * 120.00684 * 179.72636 * 27 26 25 46 46 H 1.08007 * 120.00230 * 179.97438 * 28 27 26 47 47 H 1.08001 * 119.99944 * 0.02562 * 29 24 14 48 48 H 1.08998 * 110.36422 * 94.93861 * 30 10 9 49 49 H 1.08999 * 110.36522 * 217.26070 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5865 -0.0005 6 6 3.9209 2.9373 -0.0012 7 1 3.5451 3.5136 0.8443 8 6 3.6273 3.6599 -1.3424 9 6 4.7817 4.6790 -1.4433 10 7 5.8796 4.1797 -0.6026 11 6 7.0629 4.7951 -0.4088 12 8 7.8970 4.2919 0.3137 13 6 7.3495 6.1086 -1.0896 14 6 8.7503 6.5881 -0.7037 15 1 9.4774 5.8102 -0.9363 16 6 8.7898 6.8875 0.7727 17 1 7.8865 7.1763 1.2896 18 6 9.9791 6.7925 1.4637 19 7 11.0534 6.3294 0.8631 20 14 10.0625 7.3145 3.2555 21 1 11.4413 7.1094 3.7671 22 1 9.7003 8.7501 3.3701 23 1 9.1120 6.4990 4.0533 24 6 9.0851 7.8366 -1.4785 25 6 8.3441 8.9880 -1.2877 26 6 8.6544 10.1345 -1.9949 27 6 9.6986 10.1268 -2.9005 28 6 10.4362 8.9740 -3.0951 29 6 10.1294 7.8288 -2.3841 30 6 5.4694 2.8975 -0.0017 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5139 0.8900 36 1 3.6556 2.9559 -2.1740 37 1 2.6662 4.1723 -1.3021 38 1 4.4516 5.6529 -1.0820 39 1 5.1140 4.7584 -2.4784 40 1 6.6133 6.8487 -0.7761 41 1 7.2951 5.9772 -2.1703 42 1 11.8903 6.2630 1.3492 43 1 7.5252 8.9926 -0.5837 44 1 8.0779 11.0351 -1.8432 45 1 9.9382 11.0213 -3.4563 46 1 11.2519 8.9677 -3.8030 47 1 10.7052 6.9279 -2.5366 48 1 5.8273 2.0638 -0.6057 49 1 5.8473 2.8182 1.0177 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000834866574.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:50 Heat of formation + Delta-G solvation = -118.698437 kcal Electronic energy + Delta-G solvation = -29956.734074 eV Core-core repulsion = 25847.758871 eV Total energy + Delta-G solvation = -4108.975203 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.89135 -40.79958 -39.80555 -38.44935 -37.57828 -35.77729 -33.59741 -33.14701 -32.30252 -31.47868 -30.53722 -29.96051 -27.69500 -25.92224 -24.44009 -23.70402 -23.18503 -23.07638 -21.56591 -21.22441 -20.07822 -18.96111 -18.50259 -18.12917 -17.87963 -17.43497 -17.13258 -16.60925 -16.28093 -16.00433 -15.78436 -15.41586 -15.28824 -14.99433 -14.59253 -14.44305 -14.39777 -14.02013 -13.81485 -13.71559 -13.62885 -13.53871 -13.32977 -13.14035 -12.97419 -12.83091 -12.80567 -12.53484 -12.51271 -12.49620 -12.36425 -11.91117 -11.82997 -11.65937 -11.54200 -11.49917 -11.29196 -10.99395 -10.61878 -10.39877 -9.56803 -9.51921 -9.17970 -8.02902 -6.05698 0.80117 0.85810 1.03876 1.36372 1.39727 1.42982 1.44131 1.92333 2.20165 2.46527 3.15939 3.20187 3.36012 3.42287 3.73216 4.00372 4.02330 4.07133 4.09121 4.22304 4.27309 4.28646 4.35972 4.37862 4.42229 4.56105 4.59465 4.63564 4.72606 4.79762 4.82531 4.85971 4.93007 4.94542 4.95484 5.00655 5.12426 5.14713 5.20282 5.38490 5.40845 5.45170 5.53893 5.68350 5.79116 5.85877 5.97950 6.19282 6.42884 6.48148 6.60416 6.64516 7.01528 7.47960 7.56529 9.06570 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013309 B = 0.002572 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.410937 B =10882.912592 C =12191.492535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.051 3.949 3 O -0.350 6.350 4 C 0.482 3.518 5 O -0.539 6.539 6 C -0.090 4.090 7 H 0.143 0.857 8 C -0.101 4.101 9 C 0.094 3.906 10 N -0.632 5.632 11 C 0.524 3.476 12 O -0.559 6.559 13 C -0.104 4.104 14 C 0.081 3.919 15 H 0.018 0.982 16 C -0.483 4.483 17 H 0.048 0.952 18 C 0.017 3.983 19 N -0.919 5.919 20 Si 0.935 3.065 21 H -0.291 1.291 22 H -0.263 1.263 23 H -0.281 1.281 24 C -0.046 4.046 25 C -0.124 4.124 26 C -0.126 4.126 27 C -0.147 4.147 28 C -0.129 4.129 29 C -0.144 4.144 30 C 0.120 3.880 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.086 0.914 37 H 0.133 0.867 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.101 0.899 41 H 0.091 0.909 42 H 0.253 0.747 43 H 0.118 0.882 44 H 0.142 0.858 45 H 0.144 0.856 46 H 0.130 0.870 47 H 0.090 0.910 48 H 0.061 0.939 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.312 -2.503 -8.627 24.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.022 4.022 3 O -0.266 6.266 4 C 0.325 3.675 5 O -0.429 6.429 6 C -0.110 4.110 7 H 0.160 0.840 8 C -0.138 4.138 9 C -0.028 4.028 10 N -0.369 5.369 11 C 0.315 3.685 12 O -0.435 6.435 13 C -0.144 4.144 14 C 0.062 3.938 15 H 0.036 0.964 16 C -0.521 4.521 17 H 0.066 0.934 18 C -0.181 4.181 19 N -0.558 5.558 20 Si 0.762 3.238 21 H -0.217 1.217 22 H -0.188 1.188 23 H -0.207 1.207 24 C -0.046 4.046 25 C -0.142 4.142 26 C -0.143 4.143 27 C -0.164 4.164 28 C -0.147 4.147 29 C -0.162 4.162 30 C -0.003 4.003 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.116 0.884 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.104 0.896 37 H 0.151 0.849 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.120 0.880 41 H 0.109 0.891 42 H 0.061 0.939 43 H 0.136 0.864 44 H 0.160 0.840 45 H 0.161 0.839 46 H 0.148 0.852 47 H 0.109 0.891 48 H 0.079 0.921 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -22.407 -3.081 -8.197 24.057 hybrid contribution 1.117 -0.688 1.477 1.975 sum -21.290 -3.769 -6.721 22.642 Atomic orbital electron populations 1.21819 0.90090 1.04353 1.03955 1.23331 0.97260 0.79131 1.02521 1.86501 1.23035 1.33697 1.83383 1.23431 0.80965 0.91880 0.71178 1.90699 1.61335 1.44189 1.46659 1.22137 0.93715 0.90633 1.04466 0.83971 1.22688 1.00208 0.97405 0.93539 1.22360 0.85648 0.98916 0.95858 1.48648 1.16032 1.22588 1.49611 1.20925 0.79725 0.86897 0.81001 1.90764 1.46839 1.66918 1.38939 1.21604 1.00109 0.92917 0.99728 1.17606 0.91741 0.90877 0.93556 0.96410 1.20956 0.93558 1.44185 0.93417 0.93352 1.25547 0.96279 0.95330 1.00983 1.70062 1.00903 1.46885 1.37996 0.85967 0.76581 0.79145 0.82088 1.21693 1.18784 1.20724 1.20523 0.94252 0.97485 0.92358 1.21047 1.00759 0.92728 0.99659 1.21380 0.98244 0.98052 0.96674 1.21262 0.96791 0.98249 1.00146 1.21270 1.00232 0.93132 1.00063 1.21087 0.98412 0.98551 0.98164 1.21840 0.92687 0.86882 0.98894 0.91227 0.90800 0.88414 0.91228 0.91704 0.89577 0.84924 0.88797 0.89595 0.88050 0.89069 0.93852 0.86354 0.83991 0.83873 0.85196 0.89134 0.92052 0.92514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 10.29 71.98 0.74 -0.41 16 2 C 0.05 0.73 6.19 71.98 0.45 1.17 16 3 O -0.35 -6.19 10.22 -51.42 -0.53 -6.71 16 4 C 0.48 10.65 7.27 71.24 0.52 11.17 16 5 O -0.54 -16.02 15.47 21.98 0.34 -15.68 16 6 C -0.09 -1.75 3.54 -10.15 -0.04 -1.79 16 7 H 0.14 2.27 8.14 -2.39 -0.02 2.25 16 8 C -0.10 -1.34 6.41 31.78 0.20 -1.13 16 9 C 0.09 1.74 6.48 86.73 0.56 2.30 16 10 N -0.63 -19.69 3.33 -811.82 -2.70 -22.39 16 11 C 0.52 22.20 7.60 87.66 0.67 22.87 16 12 O -0.56 -30.86 15.24 -3.04 -0.05 -30.90 16 13 C -0.10 -4.04 4.14 29.85 0.12 -3.91 16 14 C 0.08 4.06 1.65 -12.28 -0.02 4.04 16 15 H 0.02 1.06 7.02 -2.39 -0.02 1.04 16 16 C -0.48 -26.93 6.36 25.60 0.16 -26.77 16 17 H 0.05 2.63 7.82 -2.91 -0.02 2.61 16 18 C 0.02 1.00 5.45 84.65 0.46 1.46 16 19 N -0.92 -57.85 12.89 21.44 0.28 -57.58 16 20 Si 0.94 47.15 29.54 68.60 2.03 49.18 16 21 H -0.29 -14.64 7.11 99.48 0.71 -13.93 16 22 H -0.26 -12.45 7.11 99.48 0.71 -11.75 16 23 H -0.28 -14.17 7.11 99.48 0.71 -13.46 16 24 C -0.05 -2.04 4.77 -19.86 -0.09 -2.13 16 25 C -0.12 -4.74 8.86 22.27 0.20 -4.55 16 26 C -0.13 -3.99 10.05 22.27 0.22 -3.77 16 27 C -0.15 -4.50 10.05 22.27 0.22 -4.27 16 28 C -0.13 -4.53 10.05 22.27 0.22 -4.31 16 29 C -0.14 -6.22 9.67 22.27 0.22 -6.01 16 30 C 0.12 3.62 6.03 86.85 0.52 4.14 16 31 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.07 1.01 8.13 -2.39 -0.02 0.99 16 35 H 0.06 1.00 8.13 -2.38 -0.02 0.98 16 36 H 0.09 1.10 8.03 -2.39 -0.02 1.08 16 37 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.10 3.42 7.79 -2.39 -0.02 3.40 16 41 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 42 H 0.25 15.43 8.31 -92.70 -0.77 14.66 16 43 H 0.12 4.31 7.77 -2.91 -0.02 4.29 16 44 H 0.14 3.47 8.06 -2.91 -0.02 3.44 16 45 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 46 H 0.13 3.82 8.06 -2.91 -0.02 3.80 16 47 H 0.09 4.20 7.95 -2.91 -0.02 4.17 16 48 H 0.06 2.02 7.40 -2.39 -0.02 2.00 16 49 H 0.06 2.00 8.04 -2.39 -0.02 1.98 16 Total: -1.00 -82.66 408.57 5.64 -77.03 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 0.93 Total: 18.94 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: 5.34 Total: -11.89 kcal Atomic # 7 Polarization: -77.54 SS G_CDS: -2.42 Total: -79.96 kcal Atomic # 8 Polarization: -53.07 SS G_CDS: -0.23 Total: -53.30 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.18 kcal Total: -82.66 5.64 -77.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834866574.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.671 kcal (2) G-P(sol) polarization free energy of solvation -82.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds