Wall clock time and date at job start Wed Apr 1 2020 04:25:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 O 1.45202 * 109.46996 * 2 1
4 4 C 1.34229 * 116.99741 * 180.02562 * 3 2 1
5 5 O 1.20829 * 120.00039 * 359.97438 * 4 3 2
6 6 C 1.50700 * 119.99757 * 179.97438 * 4 3 2
7 7 H 1.08994 * 110.05945 * 329.77422 * 6 4 3
8 8 C 1.54265 * 110.03249 * 208.35695 * 6 4 3
9 9 C 1.54885 * 104.19659 * 217.10846 * 8 6 4
10 10 C 1.54886 * 102.75162 * 37.94194 * 9 8 6
11 11 C 1.53882 * 110.03012 * 91.19281 * 6 4 3
12 12 H 1.08996 * 110.06899 * 238.58809 * 11 6 4
13 13 N 1.46497 * 110.03383 * 359.97438 * 11 6 4
14 14 C 1.34773 * 120.00106 * 209.31363 * 13 11 6
15 15 O 1.21283 * 119.99516 * 0.02562 * 14 13 11
16 16 C 1.50693 * 120.00261 * 179.97438 * 14 13 11
17 17 C 1.50702 * 109.47439 * 179.97438 * 16 14 13
18 18 C 1.37633 * 120.13227 * 265.02588 * 17 16 14
19 19 C 1.38616 * 120.25081 * 179.97438 * 18 17 16
20 20 C 1.38653 * 120.50098 * 359.97438 * 19 18 17
21 21 C 1.37603 * 120.24663 * 0.02562 * 20 19 18
22 22 C 1.40698 * 120.12288 * 85.00415 * 17 16 14
23 23 C 1.41399 * 120.24622 * 0.04459 * 22 17 16
24 24 H 1.07999 * 119.99862 * 331.58985 * 23 22 17
25 25 C 1.39938 * 120.00063 * 151.59674 * 23 22 17
26 26 N 1.30827 * 119.99886 * 347.00435 * 25 23 22
27 27 Si 1.86800 * 120.00176 * 167.00721 * 25 23 22
28 28 H 1.48498 * 109.46980 * 59.99935 * 27 25 23
29 29 H 1.48507 * 109.47273 * 179.97438 * 27 25 23
30 30 H 1.48494 * 109.47034 * 299.99474 * 27 25 23
31 31 H 1.08993 * 109.47086 * 60.00092 * 1 2 3
32 32 H 1.09002 * 109.47149 * 180.02562 * 1 2 3
33 33 H 1.09005 * 109.47081 * 300.00408 * 1 2 3
34 34 H 1.08995 * 109.46895 * 239.99596 * 2 1 3
35 35 H 1.09002 * 109.46954 * 119.99331 * 2 1 3
36 36 H 1.08996 * 110.48546 * 98.42486 * 8 6 4
37 37 H 1.09003 * 110.59899 * 335.84359 * 8 6 4
38 38 H 1.09003 * 110.75462 * 279.62514 * 9 8 6
39 39 H 1.09007 * 110.91362 * 156.33034 * 9 8 6
40 40 H 1.09000 * 110.48561 * 203.38150 * 10 9 8
41 41 H 1.09002 * 110.59999 * 80.79128 * 10 9 8
42 42 H 0.96997 * 119.99849 * 29.31275 * 13 11 6
43 43 H 1.09006 * 109.46826 * 60.00465 * 16 14 13
44 44 H 1.09004 * 109.47531 * 300.00428 * 16 14 13
45 45 H 1.08002 * 119.87697 * 359.97438 * 18 17 16
46 46 H 1.07996 * 119.74652 * 179.97438 * 19 18 17
47 47 H 1.07995 * 119.87942 * 180.27661 * 20 19 18
48 48 H 1.08000 * 120.12213 * 180.02562 * 21 20 19
49 49 H 0.97009 * 120.00034 * 180.02562 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0140 1.3690 0.0000
4 6 3.3447 1.5448 -0.0005
5 8 4.0807 0.5866 -0.0005
6 6 3.9207 2.9374 -0.0012
7 1 3.2459 3.6208 -0.5165
8 6 5.3010 2.9381 -0.6900
9 6 6.1353 3.9517 0.1319
10 6 5.6624 3.6867 1.5828
11 6 4.1505 3.4134 1.4441
12 1 3.5871 4.3276 1.6308
13 7 3.7399 2.3703 2.3872
14 6 3.2889 2.7084 3.6115
15 8 3.2226 3.8762 3.9321
16 6 2.8660 1.6355 4.5815
17 6 2.4069 2.2734 5.8673
18 6 3.2836 2.4179 6.9184
19 6 2.8641 3.0048 8.1021
20 6 1.5594 3.4529 8.2416
21 6 0.6657 3.3188 7.2039
22 6 1.0804 2.7239 5.9977
23 6 0.1707 2.5803 4.9248
24 1 0.5328 2.5711 3.9074
25 6 -1.1989 2.4503 5.1813
26 7 -1.6164 2.2067 6.3970
27 14 -2.4308 2.6246 3.7879
28 1 -2.1596 1.5923 2.7555
29 1 -3.8063 2.4446 4.3179
30 1 -2.3058 3.9749 3.1828
31 1 -0.3633 0.5138 -0.8899
32 1 -0.3633 -1.0277 0.0005
33 1 -0.3633 0.5139 0.8900
34 1 1.8933 -0.5139 -0.8899
35 1 1.8933 -0.5137 0.8901
36 1 5.2107 3.2684 -1.7248
37 1 5.7525 1.9470 -0.6451
38 1 5.9061 4.9741 -0.1684
39 1 7.2018 3.7507 0.0304
40 1 5.8359 4.5635 2.2067
41 1 6.1706 2.8169 1.9990
42 1 3.7926 1.4364 2.1306
43 1 3.7100 0.9762 4.7846
44 1 2.0488 1.0573 4.1502
45 1 4.3023 2.0728 6.8207
46 1 3.5587 3.1137 8.9218
47 1 1.2445 3.9127 9.1666
48 1 -0.3499 3.6689 7.3146
49 1 -2.5658 2.1162 6.5747
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000836971124.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:25:46
Heat of formation + Delta-G solvation = -121.332862 kcal
Electronic energy + Delta-G solvation = -31443.256273 eV
Core-core repulsion = 27334.166832 eV
Total energy + Delta-G solvation = -4109.089440 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.177 amu
Computer time = 1.14 seconds
Orbital eigenvalues (eV)
-41.13046 -39.31174 -38.01085 -37.08965 -36.39635 -33.56585 -33.37516 -31.87332
-31.63444 -29.64621 -29.41832 -28.15630 -26.31735 -24.89950 -23.92204 -22.20273
-21.23785 -20.87579 -20.66391 -19.80714 -19.35535 -17.85282 -17.25305 -17.00031
-16.77724 -16.19209 -15.45415 -15.34735 -15.04887 -14.72571 -14.49229 -14.21499
-14.06768 -13.56502 -13.44636 -13.27513 -12.97573 -12.94470 -12.55003 -12.42448
-12.07787 -11.87309 -11.71229 -11.67740 -11.59137 -11.50889 -11.27577 -11.18115
-11.10582 -10.97060 -10.93833 -10.85058 -10.65112 -10.60023 -10.47266 -10.37038
-9.45467 -9.34487 -9.16663 -9.14646 -8.78074 -7.27753 -7.22899 -6.67421
-4.31545 2.01324 2.53399 2.82126 2.99590 3.07351 3.10761 3.29284
3.31460 3.59092 3.96513 4.24417 4.28715 4.55609 4.71317 4.85443
4.89033 4.94381 5.12658 5.15735 5.18696 5.23407 5.33231 5.45967
5.53631 5.58689 5.66938 5.72905 5.79085 5.81698 5.95407 5.98240
6.04543 6.05390 6.13218 6.21692 6.31474 6.37488 6.45493 6.54076
6.74820 6.82651 7.13515 7.32739 7.45465 7.61178 7.67472 7.84877
7.96590 8.11225 8.15899 8.35604 8.68536 8.83991 8.95991 9.05036
10.26996
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.009389 B = 0.004474 C = 0.003356
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2981.652721 B = 6256.649207 C = 8342.402821
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C 0.062 3.938
3 O -0.349 6.349
4 C 0.474 3.526
5 O -0.511 6.511
6 C -0.098 4.098
7 H 0.113 0.887
8 C -0.115 4.115
9 C -0.120 4.120
10 C -0.135 4.135
11 C 0.156 3.844
12 H 0.108 0.892
13 N -0.745 5.745
14 C 0.519 3.481
15 O -0.516 6.516
16 C -0.071 4.071
17 C -0.178 4.178
18 C -0.083 4.083
19 C -0.236 4.236
20 C -0.109 4.109
21 C -0.155 4.155
22 C 0.130 3.870
23 C -0.457 4.457
24 H 0.073 0.927
25 C 0.076 3.924
26 N -0.800 5.800
27 Si 0.902 3.098
28 H -0.265 1.265
29 H -0.279 1.279
30 H -0.265 1.265
31 H 0.064 0.936
32 H 0.080 0.920
33 H 0.074 0.926
34 H 0.068 0.932
35 H 0.073 0.927
36 H 0.074 0.926
37 H 0.088 0.912
38 H 0.072 0.928
39 H 0.074 0.926
40 H 0.077 0.923
41 H 0.074 0.926
42 H 0.393 0.607
43 H 0.075 0.925
44 H 0.095 0.905
45 H 0.084 0.916
46 H 0.085 0.915
47 H 0.086 0.914
48 H 0.117 0.883
49 H 0.279 0.721
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.641 -2.217 -14.949 16.934
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.214 4.214
2 C -0.011 4.011
3 O -0.265 6.265
4 C 0.317 3.683
5 O -0.399 6.399
6 C -0.118 4.118
7 H 0.131 0.869
8 C -0.153 4.153
9 C -0.158 4.158
10 C -0.173 4.173
11 C 0.050 3.950
12 H 0.125 0.875
13 N -0.402 5.402
14 C 0.307 3.693
15 O -0.389 6.389
16 C -0.111 4.111
17 C -0.179 4.179
18 C -0.101 4.101
19 C -0.256 4.256
20 C -0.127 4.127
21 C -0.174 4.174
22 C 0.127 3.873
23 C -0.487 4.487
24 H 0.091 0.909
25 C -0.140 4.140
26 N -0.427 5.427
27 Si 0.727 3.273
28 H -0.190 1.190
29 H -0.204 1.204
30 H -0.189 1.189
31 H 0.083 0.917
32 H 0.098 0.902
33 H 0.093 0.907
34 H 0.086 0.914
35 H 0.091 0.909
36 H 0.093 0.907
37 H 0.106 0.894
38 H 0.091 0.909
39 H 0.093 0.907
40 H 0.096 0.904
41 H 0.093 0.907
42 H 0.228 0.772
43 H 0.093 0.907
44 H 0.113 0.887
45 H 0.102 0.898
46 H 0.103 0.897
47 H 0.104 0.896
48 H 0.135 0.865
49 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges 7.515 -1.724 -14.553 16.470
hybrid contribution -0.686 -0.604 -0.717 1.162
sum 6.829 -2.329 -15.270 16.889
Atomic orbital electron populations
1.21844 0.92406 1.03115 1.04025 1.23078 0.95730 0.79855 1.02479
1.86587 1.24066 1.32684 1.83182 1.23436 0.80871 0.92420 0.71556
1.90658 1.60457 1.42907 1.45895 1.22153 0.98859 0.91495 0.99322
0.86918 1.22456 0.92176 1.01829 0.98800 1.22447 0.99722 0.99035
0.94607 1.22836 0.94693 1.02800 0.97014 1.21462 0.96063 0.92851
0.84605 0.87450 1.46485 1.68988 1.09120 1.15624 1.21231 0.75273
0.91401 0.81354 1.90673 1.51919 1.20010 1.76339 1.20269 1.00995
0.95852 0.94001 1.19068 0.96027 1.09299 0.93550 1.20300 0.96478
0.99462 0.93863 1.20312 0.96288 1.11169 0.97799 1.20684 0.93965
1.00430 0.97638 1.21298 0.99152 1.02750 0.94206 1.17332 0.90246
0.87138 0.92560 1.19422 0.90697 1.44430 0.94131 0.90886 1.25848
0.99455 0.92418 0.96300 1.69802 1.16886 1.34988 1.20984 0.86467
0.79024 0.80065 0.81731 1.19020 1.20420 1.18914 0.91657 0.90157
0.90708 0.91380 0.90877 0.90682 0.89359 0.90886 0.90750 0.90385
0.90747 0.77168 0.90686 0.88686 0.89790 0.89664 0.89580 0.86531
0.91026
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.67 10.29 37.16 0.38 -1.28 16
2 C 0.06 0.72 6.19 37.16 0.23 0.95 16
3 O -0.35 -4.72 10.22 -39.26 -0.40 -5.12 16
4 C 0.47 6.16 5.00 36.01 0.18 6.34 16
5 O -0.51 -7.28 14.85 -18.75 -0.28 -7.56 16
6 C -0.10 -1.08 3.40 -90.65 -0.31 -1.39 16
7 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16
8 C -0.12 -1.04 6.30 -25.07 -0.16 -1.19 16
9 C -0.12 -1.02 6.91 -24.74 -0.17 -1.19 16
10 C -0.13 -1.55 6.54 -25.07 -0.16 -1.71 16
11 C 0.16 2.08 3.30 -66.81 -0.22 1.86 16
12 H 0.11 1.60 7.43 -51.93 -0.39 1.21 16
13 N -0.75 -11.72 4.54 -52.72 -0.24 -11.96 16
14 C 0.52 10.32 7.45 -10.99 -0.08 10.24 16
15 O -0.52 -12.23 15.62 5.56 0.09 -12.14 16
16 C -0.07 -1.45 5.19 -29.04 -0.15 -1.60 16
17 C -0.18 -4.33 4.43 -103.91 -0.46 -4.79 16
18 C -0.08 -1.94 9.66 -39.66 -0.38 -2.32 16
19 C -0.24 -5.56 10.05 -39.29 -0.39 -5.96 16
20 C -0.11 -2.68 10.02 -39.66 -0.40 -3.07 16
21 C -0.15 -4.16 8.66 -38.87 -0.34 -4.50 16
22 C 0.13 3.49 5.54 -106.82 -0.59 2.89 16
23 C -0.46 -12.05 8.09 -37.74 -0.31 -12.36 16
24 H 0.07 1.89 6.75 -52.49 -0.35 1.54 16
25 C 0.08 1.92 5.21 -17.34 -0.09 1.83 16
26 N -0.80 -20.75 10.94 55.55 0.61 -20.14 16
27 Si 0.90 18.83 29.58 -169.99 -5.03 13.81 16
28 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16
29 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16
30 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16
31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16
32 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16
33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16
34 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16
35 H 0.07 0.85 8.13 -51.93 -0.42 0.43 16
36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16
37 H 0.09 0.90 6.86 -51.93 -0.36 0.55 16
38 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16
39 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16
40 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16
41 H 0.07 0.89 8.05 -51.93 -0.42 0.48 16
42 H 0.39 5.80 6.35 -40.82 -0.26 5.54 16
43 H 0.07 1.31 8.05 -51.93 -0.42 0.89 16
44 H 0.10 1.91 7.10 -51.93 -0.37 1.55 16
45 H 0.08 1.74 8.06 -52.49 -0.42 1.31 16
46 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16
47 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16
48 H 0.12 3.22 6.28 -52.49 -0.33 2.89 16
49 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16
LS Contribution 400.05 15.07 6.03 6.03
Total: -1.00 -31.21 400.05 -10.17 -41.37
By element:
Atomic # 1 Polarization: 20.49 SS G_CDS: -7.52 Total: 12.97 kcal
Atomic # 6 Polarization: -13.85 SS G_CDS: -3.42 Total: -17.27 kcal
Atomic # 7 Polarization: -32.46 SS G_CDS: 0.37 Total: -32.10 kcal
Atomic # 8 Polarization: -24.22 SS G_CDS: -0.59 Total: -24.82 kcal
Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.81 kcal
Total LS contribution 6.03 Total: 6.03 kcal
Total: -31.21 -10.17 -41.37 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000836971124.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -79.958 kcal
(2) G-P(sol) polarization free energy of solvation -31.208 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.166 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.167 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.375 kcal
(6) G-S(sol) free energy of system = (1) + (5) -121.333 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.14 seconds