Wall clock time and date at job start Wed Apr 1 2020 04:25:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 O 1.45202 * 109.46996 * 2 1
4 4 C 1.34229 * 116.99741 * 180.02562 * 3 2 1
5 5 O 1.20829 * 120.00039 * 359.97438 * 4 3 2
6 6 C 1.50700 * 119.99757 * 179.97438 * 4 3 2
7 7 H 1.08994 * 110.05945 * 329.77422 * 6 4 3
8 8 C 1.54265 * 110.03249 * 208.35695 * 6 4 3
9 9 C 1.54885 * 104.19659 * 217.10846 * 8 6 4
10 10 C 1.54886 * 102.75162 * 37.94194 * 9 8 6
11 11 C 1.53882 * 110.03012 * 91.19281 * 6 4 3
12 12 H 1.08996 * 110.06899 * 238.58809 * 11 6 4
13 13 N 1.46497 * 110.03383 * 359.97438 * 11 6 4
14 14 C 1.34773 * 120.00106 * 209.31363 * 13 11 6
15 15 O 1.21283 * 119.99516 * 0.02562 * 14 13 11
16 16 C 1.50693 * 120.00261 * 179.97438 * 14 13 11
17 17 C 1.50702 * 109.47439 * 179.97438 * 16 14 13
18 18 C 1.37633 * 120.13227 * 265.02588 * 17 16 14
19 19 C 1.38616 * 120.25081 * 179.97438 * 18 17 16
20 20 C 1.38653 * 120.50098 * 359.97438 * 19 18 17
21 21 C 1.37603 * 120.24663 * 0.02562 * 20 19 18
22 22 C 1.40698 * 120.12288 * 85.00415 * 17 16 14
23 23 C 1.41399 * 120.24622 * 0.04459 * 22 17 16
24 24 H 1.07999 * 119.99862 * 331.58985 * 23 22 17
25 25 C 1.39938 * 120.00063 * 151.59674 * 23 22 17
26 26 N 1.30827 * 119.99886 * 347.00435 * 25 23 22
27 27 Si 1.86800 * 120.00176 * 167.00721 * 25 23 22
28 28 H 1.48498 * 109.46980 * 59.99935 * 27 25 23
29 29 H 1.48507 * 109.47273 * 179.97438 * 27 25 23
30 30 H 1.48494 * 109.47034 * 299.99474 * 27 25 23
31 31 H 1.08993 * 109.47086 * 60.00092 * 1 2 3
32 32 H 1.09002 * 109.47149 * 180.02562 * 1 2 3
33 33 H 1.09005 * 109.47081 * 300.00408 * 1 2 3
34 34 H 1.08995 * 109.46895 * 239.99596 * 2 1 3
35 35 H 1.09002 * 109.46954 * 119.99331 * 2 1 3
36 36 H 1.08996 * 110.48546 * 98.42486 * 8 6 4
37 37 H 1.09003 * 110.59899 * 335.84359 * 8 6 4
38 38 H 1.09003 * 110.75462 * 279.62514 * 9 8 6
39 39 H 1.09007 * 110.91362 * 156.33034 * 9 8 6
40 40 H 1.09000 * 110.48561 * 203.38150 * 10 9 8
41 41 H 1.09002 * 110.59999 * 80.79128 * 10 9 8
42 42 H 0.96997 * 119.99849 * 29.31275 * 13 11 6
43 43 H 1.09006 * 109.46826 * 60.00465 * 16 14 13
44 44 H 1.09004 * 109.47531 * 300.00428 * 16 14 13
45 45 H 1.08002 * 119.87697 * 359.97438 * 18 17 16
46 46 H 1.07996 * 119.74652 * 179.97438 * 19 18 17
47 47 H 1.07995 * 119.87942 * 180.27661 * 20 19 18
48 48 H 1.08000 * 120.12213 * 180.02562 * 21 20 19
49 49 H 0.97009 * 120.00034 * 180.02562 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0140 1.3690 0.0000
4 6 3.3447 1.5448 -0.0005
5 8 4.0807 0.5866 -0.0005
6 6 3.9207 2.9374 -0.0012
7 1 3.2459 3.6208 -0.5165
8 6 5.3010 2.9381 -0.6900
9 6 6.1353 3.9517 0.1319
10 6 5.6624 3.6867 1.5828
11 6 4.1505 3.4134 1.4441
12 1 3.5871 4.3276 1.6308
13 7 3.7399 2.3703 2.3872
14 6 3.2889 2.7084 3.6115
15 8 3.2226 3.8762 3.9321
16 6 2.8660 1.6355 4.5815
17 6 2.4069 2.2734 5.8673
18 6 3.2836 2.4179 6.9184
19 6 2.8641 3.0048 8.1021
20 6 1.5594 3.4529 8.2416
21 6 0.6657 3.3188 7.2039
22 6 1.0804 2.7239 5.9977
23 6 0.1707 2.5803 4.9248
24 1 0.5328 2.5711 3.9074
25 6 -1.1989 2.4503 5.1813
26 7 -1.6164 2.2067 6.3970
27 14 -2.4308 2.6246 3.7879
28 1 -2.1596 1.5923 2.7555
29 1 -3.8063 2.4446 4.3179
30 1 -2.3058 3.9749 3.1828
31 1 -0.3633 0.5138 -0.8899
32 1 -0.3633 -1.0277 0.0005
33 1 -0.3633 0.5139 0.8900
34 1 1.8933 -0.5139 -0.8899
35 1 1.8933 -0.5137 0.8901
36 1 5.2107 3.2684 -1.7248
37 1 5.7525 1.9470 -0.6451
38 1 5.9061 4.9741 -0.1684
39 1 7.2018 3.7507 0.0304
40 1 5.8359 4.5635 2.2067
41 1 6.1706 2.8169 1.9990
42 1 3.7926 1.4364 2.1306
43 1 3.7100 0.9762 4.7846
44 1 2.0488 1.0573 4.1502
45 1 4.3023 2.0728 6.8207
46 1 3.5587 3.1137 8.9218
47 1 1.2445 3.9127 9.1666
48 1 -0.3499 3.6689 7.3146
49 1 -2.5658 2.1162 6.5747
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000836971124.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:25:45
Heat of formation + Delta-G solvation = -137.212972 kcal
Electronic energy + Delta-G solvation = -31443.944886 eV
Core-core repulsion = 27334.166832 eV
Total energy + Delta-G solvation = -4109.778054 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.177 amu
Computer time = 1.27 seconds
Orbital eigenvalues (eV)
-42.18087 -40.75681 -39.41636 -38.59752 -37.45194 -35.47926 -34.71217 -33.39576
-32.76462 -31.34674 -30.52419 -29.46197 -27.85421 -26.74189 -24.86011 -23.16045
-22.84039 -22.56961 -21.68155 -21.14423 -20.75593 -19.07417 -18.88880 -18.38862
-17.88946 -17.33362 -17.25100 -16.50623 -16.28504 -16.19609 -16.04308 -15.46851
-15.32280 -15.10563 -14.90916 -14.45635 -14.36506 -14.34389 -13.79899 -13.62353
-13.38646 -13.33225 -13.06313 -12.88578 -12.80764 -12.76188 -12.67155 -12.55108
-12.52509 -12.45147 -12.11538 -12.08745 -11.98298 -11.62291 -11.54939 -11.47002
-11.33672 -11.22860 -11.03969 -10.80909 -10.12380 -9.21114 -9.16071 -8.56588
-6.30252 0.97868 1.00132 1.12826 1.35007 1.45663 1.52947 1.60887
1.74999 2.20557 2.23451 2.80311 3.37001 3.37985 3.66001 3.73119
3.97541 4.01379 4.06422 4.11562 4.24570 4.30840 4.32784 4.35096
4.36552 4.39794 4.51145 4.57119 4.69237 4.70088 4.75090 4.77233
4.86842 4.96103 4.99913 5.06453 5.09385 5.15366 5.17437 5.19947
5.36252 5.36456 5.44496 5.49686 5.53925 5.77118 6.03027 6.16087
6.20493 6.42314 6.44549 6.61459 6.73757 7.00109 7.10542 7.31729
8.39775
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.009389 B = 0.004474 C = 0.003356
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2981.652721 B = 6256.649207 C = 8342.402821
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C 0.055 3.945
3 O -0.363 6.363
4 C 0.471 3.529
5 O -0.525 6.525
6 C -0.095 4.095
7 H 0.131 0.869
8 C -0.107 4.107
9 C -0.109 4.109
10 C -0.133 4.133
11 C 0.147 3.853
12 H 0.089 0.911
13 N -0.730 5.730
14 C 0.524 3.476
15 O -0.561 6.561
16 C -0.071 4.071
17 C -0.185 4.185
18 C -0.093 4.093
19 C -0.238 4.238
20 C -0.118 4.118
21 C -0.187 4.187
22 C 0.098 3.902
23 C -0.481 4.481
24 H 0.067 0.933
25 C 0.037 3.963
26 N -0.830 5.830
27 Si 0.966 3.034
28 H -0.249 1.249
29 H -0.267 1.267
30 H -0.270 1.270
31 H 0.074 0.926
32 H 0.102 0.898
33 H 0.048 0.952
34 H 0.084 0.916
35 H 0.067 0.933
36 H 0.101 0.899
37 H 0.078 0.922
38 H 0.088 0.912
39 H 0.091 0.909
40 H 0.067 0.933
41 H 0.068 0.932
42 H 0.399 0.601
43 H 0.106 0.894
44 H 0.092 0.908
45 H 0.114 0.886
46 H 0.116 0.884
47 H 0.107 0.893
48 H 0.097 0.903
49 H 0.285 0.715
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.878 -2.749 -17.057 19.425
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.018 4.018
3 O -0.280 6.280
4 C 0.315 3.685
5 O -0.414 6.414
6 C -0.115 4.115
7 H 0.149 0.851
8 C -0.145 4.145
9 C -0.147 4.147
10 C -0.172 4.172
11 C 0.043 3.957
12 H 0.107 0.893
13 N -0.386 5.386
14 C 0.312 3.688
15 O -0.439 6.439
16 C -0.111 4.111
17 C -0.187 4.187
18 C -0.111 4.111
19 C -0.257 4.257
20 C -0.136 4.136
21 C -0.207 4.207
22 C 0.095 3.905
23 C -0.511 4.511
24 H 0.086 0.914
25 C -0.177 4.177
26 N -0.457 5.457
27 Si 0.787 3.213
28 H -0.172 1.172
29 H -0.192 1.192
30 H -0.195 1.195
31 H 0.093 0.907
32 H 0.121 0.879
33 H 0.067 0.933
34 H 0.102 0.898
35 H 0.085 0.915
36 H 0.120 0.880
37 H 0.096 0.904
38 H 0.106 0.894
39 H 0.110 0.890
40 H 0.086 0.914
41 H 0.087 0.913
42 H 0.236 0.764
43 H 0.124 0.876
44 H 0.110 0.890
45 H 0.132 0.868
46 H 0.134 0.866
47 H 0.125 0.875
48 H 0.115 0.885
49 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges 8.775 -2.287 -16.687 18.992
hybrid contribution -0.994 -0.472 -0.008 1.100
sum 7.781 -2.759 -16.695 18.625
Atomic orbital electron populations
1.21859 0.91728 1.04334 1.03128 1.23264 0.96335 0.79208 1.02984
1.86593 1.24443 1.33833 1.83103 1.23787 0.80647 0.92965 0.71059
1.90649 1.60649 1.43557 1.46543 1.22256 1.00615 0.90713 0.97866
0.85134 1.22462 0.90440 1.01517 1.00073 1.22441 1.00568 0.99795
0.91871 1.22793 0.93073 1.02083 0.99229 1.21685 0.97206 0.91449
0.85407 0.89318 1.46322 1.67460 1.10108 1.14670 1.21032 0.75018
0.90396 0.82353 1.90654 1.54241 1.21509 1.77452 1.20272 1.01985
0.96147 0.92681 1.19501 0.95385 1.08386 0.95446 1.20719 0.97790
0.99045 0.93526 1.20719 0.96222 1.09971 0.98804 1.20964 0.94373
1.00386 0.97880 1.21304 0.99009 1.04720 0.95665 1.17712 0.91798
0.88018 0.92929 1.19536 0.91791 1.46032 0.93781 0.91445 1.26621
1.00790 0.91541 0.98738 1.69868 1.17576 1.35480 1.22777 0.85497
0.76939 0.79933 0.78936 1.17226 1.19162 1.19548 0.90695 0.87950
0.93309 0.89768 0.91468 0.88017 0.90383 0.89353 0.89043 0.91381
0.91320 0.76428 0.87595 0.89019 0.86761 0.86586 0.87541 0.88477
0.90461
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.07 10.29 71.98 0.74 -2.33 16
2 C 0.06 1.22 6.19 71.98 0.45 1.66 16
3 O -0.36 -9.47 10.22 -51.41 -0.53 -10.00 16
4 C 0.47 11.61 5.00 71.24 0.36 11.96 16
5 O -0.52 -14.19 14.85 21.95 0.33 -13.87 16
6 C -0.09 -1.92 3.40 -10.81 -0.04 -1.96 16
7 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16
8 C -0.11 -1.62 6.30 31.67 0.20 -1.42 16
9 C -0.11 -1.54 6.91 31.88 0.22 -1.32 16
10 C -0.13 -2.89 6.54 31.67 0.21 -2.68 16
11 C 0.15 3.84 3.30 45.72 0.15 3.99 16
12 H 0.09 2.68 7.43 -2.39 -0.02 2.66 16
13 N -0.73 -22.75 4.54 -439.11 -1.99 -24.74 16
14 C 0.52 20.99 7.45 87.66 0.65 21.64 16
15 O -0.56 -27.27 15.62 -3.04 -0.05 -27.31 16
16 C -0.07 -2.89 5.19 29.10 0.15 -2.74 16
17 C -0.19 -9.14 4.43 -19.41 -0.09 -9.23 16
18 C -0.09 -4.26 9.66 22.22 0.21 -4.05 16
19 C -0.24 -10.97 10.05 22.46 0.23 -10.74 16
20 C -0.12 -5.85 10.02 22.22 0.22 -5.63 16
21 C -0.19 -10.48 8.66 22.73 0.20 -10.28 16
22 C 0.10 5.43 5.54 -21.29 -0.12 5.31 16
23 C -0.48 -26.34 8.09 23.46 0.19 -26.15 16
24 H 0.07 3.63 6.75 -2.91 -0.02 3.61 16
25 C 0.04 1.91 5.21 85.25 0.44 2.35 16
26 N -0.83 -44.44 10.94 21.82 0.24 -44.20 16
27 Si 0.97 39.16 29.58 68.60 2.03 41.19 16
28 H -0.25 -9.31 7.11 99.48 0.71 -8.61 16
29 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16
30 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16
31 H 0.07 1.33 8.14 -2.39 -0.02 1.32 16
32 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16
33 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16
34 H 0.08 1.57 8.13 -2.39 -0.02 1.55 16
35 H 0.07 1.53 8.13 -2.39 -0.02 1.51 16
36 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16
37 H 0.08 1.39 6.86 -2.39 -0.02 1.37 16
38 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16
39 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16
40 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16
41 H 0.07 1.57 8.05 -2.39 -0.02 1.55 16
42 H 0.40 11.53 6.35 -92.71 -0.59 10.94 16
43 H 0.11 3.54 8.05 -2.38 -0.02 3.53 16
44 H 0.09 3.76 7.10 -2.39 -0.02 3.74 16
45 H 0.11 4.47 8.06 -2.91 -0.02 4.45 16
46 H 0.12 4.55 8.06 -2.91 -0.02 4.53 16
47 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16
48 H 0.10 5.67 6.28 -2.91 -0.02 5.65 16
49 H 0.28 13.91 8.30 -92.70 -0.77 13.14 16
Total: -1.00 -70.12 400.05 4.77 -65.35
By element:
Atomic # 1 Polarization: 44.82 SS G_CDS: 0.37 Total: 45.20 kcal
Atomic # 6 Polarization: -35.99 SS G_CDS: 4.38 Total: -31.62 kcal
Atomic # 7 Polarization: -67.18 SS G_CDS: -1.75 Total: -68.94 kcal
Atomic # 8 Polarization: -50.93 SS G_CDS: -0.25 Total: -51.18 kcal
Atomic # 14 Polarization: 39.16 SS G_CDS: 2.03 Total: 41.19 kcal
Total: -70.12 4.77 -65.35 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000836971124.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -71.867 kcal
(2) G-P(sol) polarization free energy of solvation -70.121 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.988 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.775 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.346 kcal
(6) G-S(sol) free energy of system = (1) + (5) -137.213 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.27 seconds