Wall clock time and date at job start Wed Apr 1 2020 04:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 120.00166 * 2 1 4 4 C 1.52998 * 109.47244 * 124.99946 * 3 2 1 5 5 C 1.52992 * 109.47141 * 180.02562 * 4 3 2 6 6 H 1.09003 * 109.47289 * 54.99735 * 5 4 3 7 7 N 1.46506 * 109.47048 * 294.99859 * 5 4 3 8 8 C 1.34772 * 120.00007 * 155.00372 * 7 5 4 9 9 O 1.21280 * 120.00365 * 359.97438 * 8 7 5 10 10 C 1.50700 * 119.99888 * 180.02562 * 8 7 5 11 11 C 1.50697 * 109.47423 * 179.97438 * 10 8 7 12 12 C 1.37631 * 120.12850 * 264.99960 * 11 10 8 13 13 C 1.38616 * 120.25169 * 179.69932 * 12 11 10 14 14 C 1.38662 * 120.49608 * 0.02562 * 13 12 11 15 15 C 1.37597 * 120.25313 * 0.02562 * 14 13 12 16 16 C 1.40701 * 120.12469 * 84.71974 * 11 10 8 17 17 C 1.41393 * 120.24450 * 0.25794 * 16 11 10 18 18 H 1.07997 * 120.00169 * 334.04500 * 17 16 11 19 19 C 1.39956 * 119.99910 * 154.03819 * 17 16 11 20 20 N 1.30823 * 119.99664 * 343.66847 * 19 17 16 21 21 Si 1.86795 * 119.99774 * 163.66669 * 19 17 16 22 22 H 1.48500 * 109.47179 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46832 * 120.00304 * 21 19 17 24 24 H 1.48500 * 109.47145 * 240.00294 * 21 19 17 25 25 C 1.50703 * 109.47289 * 175.00037 * 5 4 3 26 26 O 1.20828 * 120.00233 * 119.99995 * 25 5 4 27 27 O 1.34228 * 119.99683 * 299.99653 * 25 5 4 28 28 C 1.45199 * 116.99995 * 180.02562 * 27 25 5 29 29 C 1.53000 * 109.47374 * 180.02562 * 28 27 25 30 30 H 1.07999 * 120.00282 * 180.02562 * 1 2 3 31 31 H 1.08000 * 119.99605 * 0.02562 * 1 2 3 32 32 H 1.08000 * 119.99605 * 179.97438 * 2 1 3 33 33 H 1.08998 * 109.46991 * 4.99877 * 3 2 1 34 34 H 1.09000 * 109.46873 * 245.00094 * 3 2 1 35 35 H 1.09001 * 109.46953 * 59.99591 * 4 3 2 36 36 H 1.09008 * 109.47121 * 299.99602 * 4 3 2 37 37 H 0.96998 * 119.99643 * 334.99785 * 7 5 4 38 38 H 1.09008 * 109.47369 * 59.99170 * 10 8 7 39 39 H 1.08996 * 109.47173 * 299.99833 * 10 8 7 40 40 H 1.08000 * 119.88148 * 359.72294 * 12 11 10 41 41 H 1.07995 * 119.75521 * 180.02562 * 13 12 11 42 42 H 1.08005 * 119.87501 * 179.97438 * 14 13 12 43 43 H 1.07996 * 120.13440 * 179.97438 * 15 14 13 44 44 H 0.97005 * 119.99322 * 179.97438 * 20 19 17 45 45 H 1.09003 * 109.46530 * 299.99681 * 28 27 25 46 46 H 1.08995 * 109.47447 * 59.99586 * 28 27 25 47 47 H 1.08995 * 109.47378 * 59.99290 * 29 28 27 48 48 H 1.08995 * 109.47347 * 180.02562 * 29 28 27 49 49 H 1.09007 * 109.46471 * 299.99577 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 6 3.7996 2.6583 1.1820 6 1 3.0911 3.4866 1.1821 7 7 4.6419 2.7364 -0.0142 8 6 5.0050 3.9378 -0.5054 9 8 4.6342 4.9542 0.0426 10 6 5.8709 4.0182 -1.7361 11 6 6.1298 5.4636 -2.0748 12 6 5.3352 6.1110 -2.9933 13 6 5.5671 7.4423 -3.3021 14 6 6.6003 8.1366 -2.6914 15 6 7.4081 7.5093 -1.7708 16 6 7.1811 6.1582 -1.4487 17 6 8.0037 5.5036 -0.5032 18 1 7.6217 4.6602 0.0527 19 6 9.3130 5.9486 -0.2877 20 7 9.8862 6.7402 -1.1574 21 14 10.2419 5.4123 1.2416 22 1 9.3779 4.5236 2.0594 23 1 11.4697 4.6782 0.8429 24 1 10.6169 6.6083 2.0379 25 6 4.6661 2.7381 2.4124 26 8 5.8641 2.8489 2.3016 27 8 4.1067 2.6861 3.6315 28 6 5.0020 2.7692 4.7716 29 6 4.1888 2.6930 6.0654 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5399 0.9353 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3587 2.1316 0.0895 34 1 2.6213 1.4025 -0.9314 35 1 3.7400 0.5065 1.0921 36 1 2.4773 1.2357 2.1131 37 1 4.9382 1.9235 -0.4526 38 1 5.3622 3.5353 -2.5706 39 1 6.8184 3.5136 -1.5474 40 1 4.5276 5.5799 -3.4752 41 1 4.9384 7.9425 -4.0238 42 1 6.7723 9.1735 -2.9398 43 1 8.2125 8.0518 -1.2966 44 1 10.7935 7.0490 -1.0078 45 1 5.7100 1.9411 4.7386 46 1 5.5456 3.7134 4.7388 47 1 3.6456 1.7487 6.0980 48 1 4.8609 2.7559 6.9212 49 1 3.4806 3.5210 6.0985 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837026245.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:31 Heat of formation + Delta-G solvation = -99.049343 kcal Electronic energy + Delta-G solvation = -30545.738736 eV Core-core repulsion = 26437.615581 eV Total energy + Delta-G solvation = -4108.123154 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.64353 -39.13956 -37.48362 -36.58185 -36.31350 -34.18399 -33.54141 -32.06878 -31.67135 -30.79014 -29.38181 -27.68121 -26.35137 -24.87479 -23.58098 -22.41875 -21.23977 -20.85206 -20.39112 -20.00247 -19.32366 -17.67811 -17.11510 -16.76017 -16.62164 -16.29360 -15.70633 -15.42814 -15.27361 -14.49212 -14.38262 -14.25124 -14.04439 -13.57592 -13.50146 -13.35189 -13.11678 -12.90040 -12.83527 -12.51039 -12.32428 -12.15514 -11.75807 -11.69126 -11.65170 -11.48959 -11.23020 -11.16365 -11.11386 -10.99444 -10.89821 -10.59645 -10.52404 -10.38588 -10.29939 -9.61088 -9.42080 -9.31255 -9.22568 -9.08393 -8.90582 -7.25504 -7.22283 -6.66418 -4.25712 2.01472 2.35279 2.51249 2.84797 3.03150 3.14223 3.25843 3.33375 3.39865 3.57913 4.04366 4.33707 4.62253 4.72268 4.73709 4.82704 4.90021 4.93098 5.05950 5.11215 5.18419 5.27599 5.46578 5.55596 5.59441 5.65295 5.65866 5.77848 5.80982 5.84837 5.92596 6.06749 6.17982 6.32997 6.37840 6.45228 6.49685 6.51853 6.56351 6.60265 6.85931 7.18057 7.36140 7.48806 7.70261 7.83106 7.88923 7.99254 8.16146 8.20027 8.39060 8.73490 8.81112 9.00382 9.08885 10.27702 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008607 B = 0.003872 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3252.536915 B = 7228.831626 C = 9569.346372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.152 4.152 3 C -0.094 4.094 4 C -0.115 4.115 5 C 0.161 3.839 6 H 0.124 0.876 7 N -0.724 5.724 8 C 0.522 3.478 9 O -0.515 6.515 10 C -0.068 4.068 11 C -0.183 4.183 12 C -0.080 4.080 13 C -0.242 4.242 14 C -0.107 4.107 15 C -0.160 4.160 16 C 0.129 3.871 17 C -0.452 4.452 18 H 0.078 0.922 19 C 0.078 3.922 20 N -0.796 5.796 21 Si 0.898 3.102 22 H -0.257 1.257 23 H -0.275 1.275 24 H -0.273 1.273 25 C 0.443 3.557 26 O -0.483 6.483 27 O -0.362 6.362 28 C 0.060 3.940 29 C -0.150 4.150 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.108 0.892 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.402 0.598 38 H 0.077 0.923 39 H 0.098 0.902 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.116 0.884 44 H 0.278 0.722 45 H 0.067 0.933 46 H 0.070 0.930 47 H 0.065 0.935 48 H 0.077 0.923 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.571 -14.016 7.032 20.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.170 4.170 3 C -0.131 4.131 4 C -0.153 4.153 5 C 0.053 3.947 6 H 0.142 0.858 7 N -0.380 5.380 8 C 0.311 3.689 9 O -0.388 6.388 10 C -0.108 4.108 11 C -0.185 4.185 12 C -0.099 4.099 13 C -0.261 4.261 14 C -0.125 4.125 15 C -0.179 4.179 16 C 0.127 3.873 17 C -0.482 4.482 18 H 0.096 0.904 19 C -0.139 4.139 20 N -0.422 5.422 21 Si 0.722 3.278 22 H -0.180 1.180 23 H -0.201 1.201 24 H -0.198 1.198 25 C 0.282 3.718 26 O -0.368 6.368 27 O -0.279 6.279 28 C -0.014 4.014 29 C -0.207 4.207 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.126 0.874 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.109 0.891 37 H 0.237 0.763 38 H 0.096 0.904 39 H 0.116 0.884 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.103 0.897 43 H 0.134 0.866 44 H 0.089 0.911 45 H 0.086 0.914 46 H 0.089 0.911 47 H 0.084 0.916 48 H 0.096 0.904 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.212 -13.083 7.383 19.360 hybrid contribution 0.952 -0.511 0.645 1.259 sum -11.260 -13.595 8.029 19.392 Atomic orbital electron populations 1.23874 0.96009 1.01858 1.01438 1.22937 0.96027 0.98351 0.99654 1.20772 0.98046 0.95745 0.98551 1.21767 0.98164 0.94703 1.00640 1.20371 0.91230 1.01594 0.81525 0.85849 1.46001 1.54717 1.09819 1.27440 1.21355 0.79410 0.82069 0.86085 1.90683 1.53271 1.34589 1.60274 1.20246 0.99110 0.98148 0.93269 1.19027 1.03129 0.92957 1.03361 1.20283 0.97251 0.94492 0.97825 1.20285 1.03026 0.95486 1.07306 1.20669 0.96199 0.97544 0.98119 1.21293 1.00793 0.94974 1.00848 1.17353 0.89638 0.90995 0.89341 1.19588 0.95983 1.13928 1.18708 0.90395 1.25868 0.98096 0.93559 0.96423 1.69839 1.13457 1.26808 1.32069 0.86404 0.79355 0.79555 0.82450 1.18047 1.20065 1.19821 1.24491 0.89031 0.73202 0.85100 1.90746 1.16251 1.42930 1.86829 1.86467 1.42250 1.84057 1.15106 1.22997 0.92259 1.02693 0.83457 1.21788 1.00972 1.03300 0.94647 0.88640 0.88495 0.87365 0.90843 0.90128 0.90633 0.89068 0.76300 0.90448 0.88367 0.89774 0.89723 0.89657 0.86605 0.91126 0.91441 0.91135 0.91628 0.90399 0.91443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.39 14.32 29.01 0.42 -0.98 16 2 C -0.15 -1.12 9.52 -36.03 -0.34 -1.46 16 3 C -0.09 -0.76 5.54 -27.88 -0.15 -0.92 16 4 C -0.11 -1.01 4.70 -26.74 -0.13 -1.14 16 5 C 0.16 2.12 2.48 -69.08 -0.17 1.95 16 6 H 0.12 1.73 7.58 -51.93 -0.39 1.34 16 7 N -0.72 -10.52 4.06 -54.93 -0.22 -10.75 16 8 C 0.52 10.26 7.28 -10.99 -0.08 10.18 16 9 O -0.52 -12.43 15.70 5.56 0.09 -12.35 16 10 C -0.07 -1.35 5.18 -29.04 -0.15 -1.50 16 11 C -0.18 -4.48 4.43 -103.92 -0.46 -4.94 16 12 C -0.08 -1.87 9.66 -39.66 -0.38 -2.26 16 13 C -0.24 -5.73 10.05 -39.29 -0.39 -6.12 16 14 C -0.11 -2.67 10.02 -39.66 -0.40 -3.07 16 15 C -0.16 -4.40 8.69 -38.87 -0.34 -4.73 16 16 C 0.13 3.56 5.56 -106.82 -0.59 2.97 16 17 C -0.45 -12.51 8.15 -37.74 -0.31 -12.82 16 18 H 0.08 2.18 6.67 -52.49 -0.35 1.83 16 19 C 0.08 2.05 5.16 -17.34 -0.09 1.96 16 20 N -0.80 -21.29 10.97 55.55 0.61 -20.68 16 21 Si 0.90 20.20 29.59 -169.99 -5.03 15.17 16 22 H -0.26 -6.01 7.11 56.52 0.40 -5.61 16 23 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 24 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 25 C 0.44 7.07 7.29 36.01 0.26 7.33 16 26 O -0.48 -9.73 16.07 -18.75 -0.30 -10.03 16 27 O -0.36 -4.98 10.03 -39.25 -0.39 -5.37 16 28 C 0.06 0.73 6.19 37.16 0.23 0.96 16 29 C -0.15 -1.26 10.29 37.16 0.38 -0.88 16 30 H 0.10 0.58 8.06 -52.49 -0.42 0.16 16 31 H 0.10 0.68 7.84 -52.49 -0.41 0.27 16 32 H 0.11 0.70 8.06 -52.49 -0.42 0.27 16 33 H 0.07 0.62 7.79 -51.93 -0.40 0.22 16 34 H 0.08 0.67 7.75 -51.93 -0.40 0.27 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 0.75 7.99 -51.92 -0.42 0.33 16 37 H 0.40 4.56 8.60 -40.82 -0.35 4.21 16 38 H 0.08 1.24 8.05 -51.92 -0.42 0.82 16 39 H 0.10 1.98 7.07 -51.93 -0.37 1.61 16 40 H 0.08 1.70 8.06 -52.49 -0.42 1.28 16 41 H 0.08 1.77 8.06 -52.49 -0.42 1.35 16 42 H 0.09 1.91 8.06 -52.48 -0.42 1.49 16 43 H 0.12 3.28 6.22 -52.49 -0.33 2.96 16 44 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 45 H 0.07 0.79 8.13 -51.93 -0.42 0.37 16 46 H 0.07 0.96 8.13 -51.93 -0.42 0.53 16 47 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 49 H 0.07 0.57 8.14 -51.92 -0.42 0.14 16 LS Contribution 415.23 15.07 6.26 6.26 Total: -1.00 -34.48 415.23 -9.32 -43.80 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -7.62 Total: 9.44 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -2.70 Total: -15.48 kcal Atomic # 7 Polarization: -31.81 SS G_CDS: 0.39 Total: -31.43 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -0.61 Total: -27.75 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.03 Total: 15.17 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -34.48 -9.32 -43.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837026245.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.253 kcal (2) G-P(sol) polarization free energy of solvation -34.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds