Wall clock time and date at job start Wed Apr 1 2020 03:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08993 * 109.46855 * 2 1 4 4 O 1.45195 * 109.46869 * 120.00109 * 2 1 3 5 5 C 1.34716 * 117.00029 * 270.00039 * 4 2 1 6 6 O 1.21465 * 119.99740 * 0.02562 * 5 4 2 7 7 C 1.47726 * 120.00008 * 180.02562 * 5 4 2 8 8 C 1.39377 * 119.88525 * 6.25852 * 7 5 4 9 9 C 1.37934 * 119.60200 * 179.97438 * 8 7 5 10 10 C 1.38089 * 119.93404 * 0.11505 * 9 8 7 11 11 C 1.39028 * 120.87384 * 0.03952 * 10 9 8 12 12 C 1.37413 * 119.77163 * 359.75309 * 11 10 9 13 13 C 1.50609 * 122.63709 * 180.36571 * 12 11 10 14 14 C 1.52732 * 110.60582 * 342.25723 * 13 12 11 15 15 C 1.53335 * 108.35991 * 51.02618 * 14 13 12 16 16 C 1.50656 * 117.69143 * 179.39103 * 11 10 9 17 17 C 1.50696 * 109.47051 * 240.00044 * 2 1 3 18 18 O 1.21287 * 119.99863 * 258.45121 * 17 2 1 19 19 N 1.34770 * 120.00242 * 78.45274 * 17 2 1 20 20 C 1.46505 * 119.99879 * 355.04105 * 19 17 2 21 21 C 1.46498 * 120.00557 * 175.04315 * 19 17 2 22 22 C 1.50700 * 109.47175 * 89.99729 * 21 19 17 23 23 H 1.08000 * 120.00345 * 0.02562 * 22 21 19 24 24 C 1.37880 * 120.00022 * 180.02562 * 22 21 19 25 25 N 1.31511 * 120.00378 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99983 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47401 * 59.99619 * 26 24 22 28 28 H 1.48495 * 109.47357 * 179.97438 * 26 24 22 29 29 H 1.48508 * 109.46974 * 299.99734 * 26 24 22 30 30 H 1.08995 * 109.47248 * 307.01753 * 1 2 3 31 31 H 1.09000 * 109.46807 * 67.02204 * 1 2 3 32 32 H 1.08999 * 109.46882 * 187.01405 * 1 2 3 33 33 H 1.08003 * 120.20189 * 359.94122 * 8 7 5 34 34 H 1.08006 * 120.02748 * 180.08832 * 9 8 7 35 35 H 1.08002 * 119.56177 * 180.02562 * 10 9 8 36 36 H 1.09005 * 109.24675 * 221.96999 * 13 12 11 37 37 H 1.09000 * 109.24920 * 102.55623 * 13 12 11 38 38 H 1.08993 * 109.68862 * 291.30888 * 14 13 12 39 39 H 1.08996 * 109.68421 * 170.73749 * 14 13 12 40 40 H 1.08999 * 109.68586 * 49.91647 * 15 14 13 41 41 H 1.08996 * 109.68304 * 170.47201 * 15 14 13 42 42 H 1.08998 * 109.25197 * 42.24394 * 16 11 10 43 43 H 1.09000 * 109.25603 * 282.82258 * 16 11 10 44 44 H 1.09000 * 109.46824 * 94.32760 * 20 19 17 45 45 H 1.09005 * 109.47367 * 214.32236 * 20 19 17 46 46 H 1.08998 * 109.47154 * 334.33134 * 20 19 17 47 47 H 1.09003 * 109.47663 * 210.00041 * 21 19 17 48 48 H 1.08998 * 109.47253 * 330.00168 * 21 19 17 49 49 H 0.96992 * 120.00793 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2178 0.0667 2.2851 6 8 1.9969 1.2607 2.2544 7 6 2.7101 -0.5617 3.5281 8 6 3.0869 -1.9036 3.5258 9 6 3.5461 -2.4843 4.6896 10 6 3.6276 -1.7362 5.8475 11 6 3.2510 -0.3980 5.8602 12 6 2.7958 0.1937 4.7065 13 6 2.3788 1.6396 4.6451 14 6 2.1163 2.1834 6.0480 15 6 3.3283 1.8549 6.9280 16 6 3.3558 0.3465 7.1657 17 6 2.0324 -0.7104 -1.2304 18 8 2.4328 -1.8524 -1.1503 19 7 2.0367 -0.0767 -2.4199 20 6 1.4536 1.2620 -2.5387 21 6 2.6245 -0.7264 -3.5940 22 6 1.5655 -1.5260 -4.3084 23 1 0.5556 -1.5476 -3.9264 24 6 1.8860 -2.2299 -5.4498 25 7 3.1158 -2.2041 -5.9149 26 14 0.5731 -3.2204 -6.3358 27 1 -0.5223 -2.3156 -6.7679 28 1 1.1689 -3.8791 -7.5259 29 1 0.0290 -4.2534 -5.4181 30 1 -0.3633 0.6187 0.8205 31 1 -0.3633 0.4012 -0.9461 32 1 -0.3633 -1.0200 0.1255 33 1 3.0191 -2.4854 2.6184 34 1 3.8413 -3.5233 4.6953 35 1 3.9885 -2.1969 6.7552 36 1 1.4696 1.7265 4.0501 37 1 3.1715 2.2226 4.1761 38 1 1.2239 1.7146 6.4625 39 1 1.9773 3.2635 6.0031 40 1 4.2434 2.1636 6.4226 41 1 3.2415 2.3754 7.8816 42 1 4.2899 0.0774 7.6589 43 1 2.5190 0.0684 7.8063 44 1 2.2363 2.0112 -2.4187 45 1 0.9931 1.3720 -3.5206 46 1 0.6978 1.3991 -1.7654 47 1 3.0233 0.0321 -4.2676 48 1 3.4289 -1.3902 -3.2773 49 1 3.3414 -2.6995 -6.7176 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837834447.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:23 Heat of formation + Delta-G solvation = -118.116343 kcal Electronic energy + Delta-G solvation = -30322.608870 eV Core-core repulsion = 26213.658909 eV Total energy + Delta-G solvation = -4108.949962 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.18439 -41.07517 -40.17668 -37.72664 -37.01024 -36.70974 -34.89012 -33.72133 -32.97462 -31.25897 -30.14179 -29.65605 -27.66427 -26.28264 -25.52165 -24.57606 -23.90225 -23.57527 -21.87375 -20.55322 -20.26346 -18.97701 -18.71362 -18.26965 -17.51125 -17.34869 -17.14802 -16.75603 -16.50112 -16.23211 -16.16428 -15.88297 -14.99163 -14.89927 -14.81353 -14.59432 -14.56295 -14.28732 -13.96775 -13.77620 -13.63481 -13.60669 -13.46308 -13.35911 -13.13563 -13.03700 -12.86316 -12.72850 -12.64006 -12.49836 -12.47110 -12.20769 -12.04301 -11.94779 -11.75372 -11.69969 -11.25666 -10.89527 -10.66523 -10.64544 -9.95600 -9.60557 -9.55898 -8.24287 -6.38875 -0.39074 0.31439 1.17542 1.36252 1.39295 1.40905 1.47686 1.59194 2.29178 2.41584 2.67166 3.05647 3.35168 3.46101 3.63052 3.66465 3.74213 3.80009 4.00113 4.06090 4.12433 4.20605 4.22112 4.36745 4.37630 4.49389 4.55752 4.62401 4.62905 4.67489 4.77629 4.83449 4.89689 4.93471 4.95914 5.03333 5.05552 5.09913 5.13504 5.16622 5.24619 5.31232 5.34535 5.44744 5.47303 5.49225 5.62075 5.75439 5.89318 6.01562 6.47836 6.60223 6.69066 7.16876 7.33833 8.83201 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.021666 B = 0.002290 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.046874 B =12223.810851 C =12929.702948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.082 3.918 3 H 0.120 0.880 4 O -0.341 6.341 5 C 0.502 3.498 6 O -0.511 6.511 7 C -0.154 4.154 8 C -0.076 4.076 9 C -0.136 4.136 10 C -0.074 4.074 11 C -0.097 4.097 12 C -0.022 4.022 13 C -0.085 4.085 14 C -0.119 4.119 15 C -0.121 4.121 16 C -0.076 4.076 17 C 0.500 3.500 18 O -0.575 6.575 19 N -0.601 5.601 20 C 0.064 3.936 21 C 0.260 3.740 22 C -0.543 4.543 23 H 0.056 0.944 24 C 0.007 3.993 25 N -0.928 5.928 26 Si 0.969 3.031 27 H -0.258 1.258 28 H -0.278 1.278 29 H -0.278 1.278 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.064 0.936 33 H 0.124 0.876 34 H 0.154 0.846 35 H 0.164 0.836 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.059 0.941 41 H 0.089 0.911 42 H 0.096 0.904 43 H 0.092 0.908 44 H 0.072 0.928 45 H 0.078 0.922 46 H 0.096 0.904 47 H 0.032 0.968 48 H -0.002 1.002 49 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.519 9.135 28.862 30.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.024 3.976 3 H 0.138 0.862 4 O -0.258 6.258 5 C 0.349 3.651 6 O -0.402 6.402 7 C -0.155 4.155 8 C -0.095 4.095 9 C -0.154 4.154 10 C -0.092 4.092 11 C -0.097 4.097 12 C -0.022 4.022 13 C -0.122 4.122 14 C -0.157 4.157 15 C -0.158 4.158 16 C -0.112 4.112 17 C 0.287 3.713 18 O -0.455 6.455 19 N -0.333 5.333 20 C -0.077 4.077 21 C 0.139 3.861 22 C -0.581 4.581 23 H 0.074 0.926 24 C -0.192 4.192 25 N -0.568 5.568 26 Si 0.793 3.207 27 H -0.183 1.183 28 H -0.203 1.203 29 H -0.204 1.204 30 H 0.112 0.888 31 H 0.119 0.881 32 H 0.083 0.917 33 H 0.142 0.858 34 H 0.172 0.828 35 H 0.181 0.819 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.077 0.923 41 H 0.108 0.892 42 H 0.114 0.886 43 H 0.111 0.889 44 H 0.090 0.910 45 H 0.097 0.903 46 H 0.114 0.886 47 H 0.050 0.950 48 H 0.016 0.984 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.269 8.856 28.677 30.099 hybrid contribution -0.257 -0.774 -1.537 1.740 sum -2.526 8.082 27.140 28.430 Atomic orbital electron populations 1.22228 0.89793 1.04213 1.05488 1.22557 0.97563 0.96900 0.80629 0.86199 1.86681 1.77124 1.41996 1.19959 1.21705 0.74174 0.85088 0.84111 1.90743 1.49614 1.15927 1.83952 1.19207 1.09617 0.95824 0.90834 1.21570 0.94859 0.93130 0.99907 1.21388 1.00327 1.01764 0.91913 1.21869 0.95290 0.92906 0.99127 1.19951 0.99495 0.94942 0.95289 1.19893 0.95130 0.96297 0.90907 1.20761 1.02289 0.90389 0.98759 1.21636 0.98964 1.01400 0.93683 1.21593 0.97951 0.95579 1.00716 1.20556 1.04175 0.94359 0.92136 1.20633 0.79151 0.86500 0.85057 1.90663 1.49043 1.19494 1.86263 1.48082 1.57966 1.18709 1.08533 1.22213 0.99299 0.81605 1.04623 1.18849 0.93133 0.92320 0.81761 1.21636 0.96307 1.30408 1.09791 0.92616 1.25875 0.97951 0.97399 0.97970 1.70036 1.19938 1.43116 1.23693 0.85451 0.78969 0.78731 0.77567 1.18281 1.20331 1.20387 0.88771 0.88073 0.91667 0.85761 0.82806 0.81865 0.90156 0.91098 0.91333 0.90462 0.92267 0.89228 0.88592 0.88944 0.90955 0.90284 0.88587 0.95018 0.98436 0.92324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.37 9.15 71.98 0.66 -3.72 16 2 C 0.08 2.79 2.14 29.85 0.06 2.86 16 3 H 0.12 3.66 6.47 -2.39 -0.02 3.64 16 4 O -0.34 -12.32 8.73 -50.07 -0.44 -12.76 16 5 C 0.50 15.91 7.77 70.33 0.55 16.46 16 6 O -0.51 -16.09 12.35 19.95 0.25 -15.84 16 7 C -0.15 -4.21 5.88 -20.01 -0.12 -4.32 16 8 C -0.08 -1.93 9.61 22.47 0.22 -1.72 16 9 C -0.14 -2.47 10.03 22.16 0.22 -2.24 16 10 C -0.07 -1.06 9.60 22.42 0.22 -0.85 16 11 C -0.10 -1.60 5.73 -19.88 -0.11 -1.71 16 12 C -0.02 -0.49 5.77 -19.60 -0.11 -0.60 16 13 C -0.09 -1.79 4.19 29.73 0.12 -1.67 16 14 C -0.12 -1.66 5.98 30.62 0.18 -1.48 16 15 C -0.12 -1.28 5.98 30.62 0.18 -1.10 16 16 C -0.08 -0.75 5.67 29.74 0.17 -0.58 16 17 C 0.50 22.50 6.95 87.66 0.61 23.11 16 18 O -0.58 -32.00 16.23 15.02 0.24 -31.75 16 19 N -0.60 -26.44 2.86 -851.13 -2.43 -28.87 16 20 C 0.06 1.97 9.87 127.77 1.26 3.23 16 21 C 0.26 14.29 5.14 85.63 0.44 14.73 16 22 C -0.54 -31.56 9.39 25.60 0.24 -31.32 16 23 H 0.06 3.18 7.81 -2.91 -0.02 3.16 16 24 C 0.01 0.41 5.46 84.66 0.46 0.88 16 25 N -0.93 -56.54 13.29 21.45 0.28 -56.26 16 26 Si 0.97 45.16 29.54 68.60 2.03 47.18 16 27 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 28 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 29 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 30 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.10 2.46 6.01 -2.39 -0.01 2.45 16 32 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.12 3.53 7.61 -2.91 -0.02 3.51 16 34 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 35 H 0.16 1.14 8.05 -2.91 -0.02 1.12 16 36 H 0.08 1.97 6.02 -2.38 -0.01 1.95 16 37 H 0.07 1.63 7.99 -2.39 -0.02 1.61 16 38 H 0.07 0.90 8.10 -2.39 -0.02 0.88 16 39 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.06 0.73 8.10 -2.39 -0.02 0.71 16 41 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.10 0.61 8.12 -2.39 -0.02 0.59 16 43 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.07 1.90 8.14 -2.39 -0.02 1.89 16 45 H 0.08 2.44 8.10 -2.38 -0.02 2.42 16 46 H 0.10 2.31 4.46 -2.39 -0.01 2.30 16 47 H 0.03 1.74 8.07 -2.39 -0.02 1.72 16 48 H 0.00 -0.16 7.50 -2.39 -0.02 -0.18 16 49 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -78.61 396.25 6.14 -72.47 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 0.95 Total: 15.88 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: 5.25 Total: 9.95 kcal Atomic # 7 Polarization: -82.99 SS G_CDS: -2.15 Total: -85.13 kcal Atomic # 8 Polarization: -60.41 SS G_CDS: 0.05 Total: -60.35 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -78.61 6.14 -72.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837834447.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.644 kcal (2) G-P(sol) polarization free energy of solvation -78.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds