Wall clock time and date at job start Wed Apr 1 2020 04:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46761 * 124.35031 * 2 1 4 4 C 1.54486 * 105.47489 * 162.98287 * 3 2 1 5 5 C 1.54626 * 101.76397 * 25.41308 * 4 3 2 6 6 C 1.52999 * 110.48756 * 216.52487 * 5 4 3 7 7 C 1.50703 * 109.46944 * 180.02562 * 6 5 4 8 8 C 1.38235 * 120.00292 * 89.99931 * 7 6 5 9 9 C 1.38230 * 119.99899 * 179.97438 * 8 7 6 10 10 C 1.38235 * 120.00326 * 359.95697 * 9 8 7 11 11 C 1.38234 * 119.99814 * 359.97438 * 10 9 8 12 12 C 1.38234 * 119.99503 * 269.97223 * 7 6 5 13 13 C 1.50706 * 110.48460 * 94.01393 * 5 4 3 14 14 O 1.20821 * 120.00119 * 1.83862 * 13 5 4 15 15 O 1.34228 * 119.99788 * 181.84373 * 13 5 4 16 16 C 1.45202 * 116.99773 * 180.02562 * 15 13 5 17 17 C 1.52998 * 109.46894 * 179.97438 * 16 15 13 18 18 C 1.53001 * 109.46914 * 179.97438 * 17 16 15 19 19 C 1.50707 * 109.47307 * 179.97438 * 18 17 16 20 20 H 1.08003 * 119.99710 * 359.97438 * 19 18 17 21 21 C 1.37869 * 120.00389 * 180.02562 * 19 18 17 22 22 N 1.31521 * 119.99925 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00399 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46724 * 59.99750 * 23 21 19 25 25 H 1.48494 * 109.47473 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47082 * 299.99947 * 23 21 19 27 27 C 1.34420 * 124.34962 * 179.97438 * 2 1 3 28 28 O 1.21281 * 124.94010 * 0.44539 * 27 2 1 29 29 H 1.08994 * 109.47153 * 90.00106 * 1 2 3 30 30 H 1.09006 * 109.47451 * 210.00480 * 1 2 3 31 31 H 1.09005 * 109.47197 * 330.00081 * 1 2 3 32 32 H 1.09001 * 110.24807 * 43.98285 * 3 2 1 33 33 H 1.09003 * 110.24765 * 281.98305 * 3 2 1 34 34 H 1.08998 * 110.96694 * 267.29567 * 4 3 2 35 35 H 1.08999 * 110.96708 * 143.53286 * 4 3 2 36 36 H 1.08992 * 109.47214 * 60.00082 * 6 5 4 37 37 H 1.08996 * 109.46710 * 299.99849 * 6 5 4 38 38 H 1.08001 * 119.99730 * 359.97438 * 8 7 6 39 39 H 1.08000 * 120.00376 * 179.97438 * 9 8 7 40 40 H 1.08000 * 120.00616 * 179.72578 * 10 9 8 41 41 H 1.08001 * 120.00299 * 179.97438 * 11 10 9 42 42 H 1.07997 * 120.00455 * 0.02562 * 12 7 6 43 43 H 1.08999 * 109.46938 * 299.98928 * 16 15 13 44 44 H 1.08990 * 109.47460 * 59.99532 * 16 15 13 45 45 H 1.08994 * 109.47499 * 299.99550 * 17 16 15 46 46 H 1.09004 * 109.47281 * 59.99900 * 17 16 15 47 47 H 1.09001 * 109.47478 * 299.99801 * 18 17 16 48 48 H 1.08999 * 109.47322 * 59.99718 * 18 17 16 49 49 H 0.96993 * 120.00131 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7010 0.7487 0.4357 5 6 3.6898 -0.7379 0.0102 6 6 4.4517 -1.5914 1.0260 7 6 4.4270 -3.0336 0.5893 8 6 5.4276 -3.5256 -0.2277 9 6 5.4051 -4.8486 -0.6278 10 6 4.3825 -5.6798 -0.2102 11 6 3.3827 -5.1880 0.6080 12 6 3.4039 -3.8644 1.0063 13 6 4.2868 -0.8975 -1.3643 14 8 4.7194 0.0662 -1.9507 15 8 4.3378 -2.1104 -1.9370 16 6 4.9268 -2.1895 -3.2619 17 6 4.8977 -3.6402 -3.7471 18 6 5.5177 -3.7234 -5.1434 19 6 5.4896 -5.1525 -5.6212 20 1 5.0717 -5.9242 -4.9917 21 6 5.9983 -5.4749 -6.8614 22 7 6.5077 -4.5352 -7.6278 23 14 5.9642 -7.2462 -7.4533 24 1 4.5589 -7.7231 -7.5069 25 1 6.5658 -7.3270 -8.8085 26 1 6.7401 -8.0967 -6.5153 27 6 2.2234 -1.1098 0.0005 28 8 1.7945 -2.2442 -0.0067 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.8984 1.9383 0.7102 33 1 2.3306 1.6429 -1.0004 34 1 3.8268 0.8448 1.5141 35 1 4.4754 1.3010 -0.0966 36 1 3.9800 -1.4995 2.0043 37 1 5.4844 -1.2482 1.0868 38 1 6.2268 -2.8764 -0.5534 39 1 6.1866 -5.2330 -1.2665 40 1 4.3625 -6.7123 -0.5263 41 1 2.5835 -5.8373 0.9340 42 1 2.6222 -3.4800 1.6446 43 1 4.3580 -1.5644 -3.9502 44 1 5.9586 -1.8406 -3.2223 45 1 5.4666 -4.2651 -3.0588 46 1 3.8659 -3.9895 -3.7867 47 1 4.9484 -3.0986 -5.8317 48 1 6.5494 -3.3740 -5.1043 49 1 6.8652 -4.7619 -8.5004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845209709.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:25 Heat of formation + Delta-G solvation = -91.435631 kcal Electronic energy + Delta-G solvation = -31870.607468 eV Core-core repulsion = 27762.814468 eV Total energy + Delta-G solvation = -4107.792999 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.67962 -39.59959 -38.74590 -36.91198 -36.18559 -34.75503 -33.89907 -31.69938 -31.52544 -30.48867 -28.81050 -27.25029 -27.07115 -25.26159 -23.92611 -22.56620 -22.30478 -21.18046 -20.92689 -20.29169 -19.32764 -17.80365 -17.04405 -16.71633 -16.60594 -16.30603 -16.12078 -15.61713 -15.01838 -14.82467 -14.60174 -14.44968 -14.09143 -14.03091 -13.77196 -13.47690 -13.21360 -12.98158 -12.91636 -12.71127 -12.49710 -12.34702 -12.31573 -12.07768 -12.06052 -11.87425 -11.65994 -11.57848 -10.92900 -10.75425 -10.69370 -10.65163 -10.50500 -10.41561 -10.33647 -9.83651 -9.65510 -9.45846 -9.13926 -9.00282 -8.36902 -8.33233 -8.26635 -6.00521 -4.03039 1.68317 1.85509 2.00950 2.37131 2.68632 2.99293 3.34479 3.38510 3.41533 3.82005 4.00589 4.12305 4.42140 4.46348 4.61033 4.78583 4.90933 4.95281 5.02703 5.05741 5.16154 5.20010 5.34493 5.35450 5.41402 5.43843 5.47828 5.48851 5.56628 5.61260 5.63306 5.65844 5.87786 6.02210 6.06385 6.18306 6.35652 6.42922 6.52706 6.62074 6.74301 6.85593 6.87716 6.91061 6.95742 7.06092 7.40261 7.64027 7.75483 7.87422 7.92480 7.98278 8.40055 9.03035 9.60985 11.10981 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012943 B = 0.003300 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.857906 B = 8483.336838 C = 9408.087531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.626 5.626 3 C 0.101 3.899 4 C -0.122 4.122 5 C -0.086 4.086 6 C -0.052 4.052 7 C -0.102 4.102 8 C -0.075 4.075 9 C -0.121 4.121 10 C -0.110 4.110 11 C -0.133 4.133 12 C -0.064 4.064 13 C 0.477 3.523 14 O -0.506 6.506 15 O -0.323 6.323 16 C 0.065 3.935 17 C -0.107 4.107 18 C 0.025 3.975 19 C -0.518 4.518 20 H 0.057 0.943 21 C 0.057 3.943 22 N -0.896 5.896 23 Si 0.893 3.107 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.276 1.276 27 C 0.527 3.473 28 O -0.484 6.484 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.111 0.889 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.108 0.892 39 H 0.121 0.879 40 H 0.115 0.885 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.062 0.938 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.057 0.943 47 H 0.017 0.983 48 H 0.018 0.982 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.136 11.570 22.601 26.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.362 5.362 3 C -0.022 4.022 4 C -0.159 4.159 5 C -0.091 4.091 6 C -0.089 4.089 7 C -0.103 4.103 8 C -0.093 4.093 9 C -0.139 4.139 10 C -0.128 4.128 11 C -0.151 4.151 12 C -0.082 4.082 13 C 0.319 3.681 14 O -0.395 6.395 15 O -0.238 6.238 16 C -0.008 4.008 17 C -0.145 4.145 18 C -0.012 4.012 19 C -0.557 4.557 20 H 0.075 0.925 21 C -0.144 4.144 22 N -0.535 5.535 23 Si 0.721 3.279 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.202 1.202 27 C 0.312 3.688 28 O -0.356 6.356 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.115 0.885 35 H 0.130 0.870 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.126 0.874 39 H 0.139 0.861 40 H 0.133 0.867 41 H 0.130 0.870 42 H 0.131 0.869 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.076 0.924 47 H 0.035 0.965 48 H 0.036 0.964 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.250 11.231 22.191 26.204 hybrid contribution -0.072 -0.646 -0.849 1.069 sum -8.322 10.586 21.342 25.235 Atomic orbital electron populations 1.21554 0.77479 1.03119 1.02188 1.48147 1.06676 1.07169 1.74158 1.22161 0.90103 0.87379 1.02595 1.22790 0.98118 0.91965 1.03032 1.21364 0.95831 0.98936 0.92966 1.20431 1.00491 0.91621 0.96395 1.19374 0.96601 0.93964 1.00316 1.20745 0.97586 0.95222 0.95743 1.21024 0.99185 0.93845 0.99797 1.21087 0.94652 0.99639 0.97400 1.20952 0.98710 0.95707 0.99738 1.20742 0.95658 0.92943 0.98893 1.22499 0.76444 0.82208 0.86955 1.90641 1.44726 1.40479 1.63620 1.86809 1.73009 1.30268 1.33703 1.23536 0.97399 1.01218 0.78666 1.21791 1.02060 0.90766 0.99843 1.19042 0.95827 0.97491 0.88814 1.21128 1.39644 0.93393 1.01491 0.92500 1.25013 0.95304 0.97313 0.96765 1.69956 1.40496 1.32498 1.10540 0.86633 0.78366 0.85072 0.77810 1.20201 1.21298 1.20158 1.20071 0.87270 0.84819 0.76646 1.90798 1.77241 1.20077 1.47497 0.92445 0.90472 0.90927 0.89717 0.90535 0.88498 0.87031 0.89489 0.89498 0.87379 0.86113 0.86679 0.86989 0.86920 0.91916 0.91609 0.91631 0.92386 0.96490 0.96365 0.92903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.76 10.96 59.84 0.66 1.42 16 2 N -0.63 -6.30 3.33 -180.29 -0.60 -6.90 16 3 C 0.10 0.76 7.35 -3.12 -0.02 0.74 16 4 C -0.12 -0.96 6.04 -25.10 -0.15 -1.12 16 5 C -0.09 -1.01 0.61 -155.67 -0.09 -1.10 16 6 C -0.05 -0.54 4.41 -27.88 -0.12 -0.67 16 7 C -0.10 -1.39 3.87 -104.62 -0.40 -1.79 16 8 C -0.07 -1.09 6.70 -39.59 -0.27 -1.36 16 9 C -0.12 -1.85 8.56 -39.59 -0.34 -2.19 16 10 C -0.11 -1.62 10.05 -39.58 -0.40 -2.02 16 11 C -0.13 -1.89 10.05 -39.58 -0.40 -2.29 16 12 C -0.06 -0.90 7.21 -39.58 -0.29 -1.18 16 13 C 0.48 7.41 6.42 36.01 0.23 7.64 16 14 O -0.51 -8.56 15.21 -18.75 -0.29 -8.84 16 15 O -0.32 -5.69 6.15 -39.25 -0.24 -5.93 16 16 C 0.06 1.24 5.47 37.16 0.20 1.44 16 17 C -0.11 -2.31 5.53 -26.73 -0.15 -2.46 16 18 C 0.03 0.66 4.97 -27.88 -0.14 0.52 16 19 C -0.52 -14.78 9.11 -34.44 -0.31 -15.10 16 20 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 21 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 22 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 23 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 C 0.53 6.88 6.72 -10.86 -0.07 6.80 16 28 O -0.48 -7.74 13.35 5.56 0.07 -7.67 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.64 7.93 -51.93 -0.41 0.23 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.10 0.50 7.91 -51.93 -0.41 0.08 16 35 H 0.11 0.94 6.94 -51.93 -0.36 0.58 16 36 H 0.09 0.73 8.09 -51.93 -0.42 0.31 16 37 H 0.09 0.78 8.08 -51.93 -0.42 0.36 16 38 H 0.11 1.53 7.93 -52.49 -0.42 1.11 16 39 H 0.12 1.83 7.64 -52.49 -0.40 1.43 16 40 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 41 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 42 H 0.11 1.48 7.15 -52.49 -0.38 1.11 16 43 H 0.06 1.23 8.13 -51.93 -0.42 0.81 16 44 H 0.07 1.23 8.13 -51.93 -0.42 0.81 16 45 H 0.07 1.36 6.07 -51.93 -0.32 1.05 16 46 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 47 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 48 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 394.83 15.07 5.95 5.95 Total: -1.00 -34.41 394.83 -9.27 -43.68 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -7.72 Total: 0.37 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -2.16 Total: -11.14 kcal Atomic # 7 Polarization: -33.40 SS G_CDS: 0.14 Total: -33.26 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.45 Total: -22.44 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.41 -9.27 -43.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845209709.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.759 kcal (2) G-P(sol) polarization free energy of solvation -34.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds