Wall clock time and date at job start Wed Apr 1 2020 04:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46761 * 124.35031 * 2 1 4 4 C 1.54486 * 105.47489 * 162.98287 * 3 2 1 5 5 C 1.54626 * 101.76397 * 25.41308 * 4 3 2 6 6 C 1.52999 * 110.48756 * 216.52487 * 5 4 3 7 7 C 1.50703 * 109.46944 * 180.02562 * 6 5 4 8 8 C 1.38235 * 120.00292 * 89.99931 * 7 6 5 9 9 C 1.38230 * 119.99899 * 179.97438 * 8 7 6 10 10 C 1.38235 * 120.00326 * 359.95697 * 9 8 7 11 11 C 1.38234 * 119.99814 * 359.97438 * 10 9 8 12 12 C 1.38234 * 119.99503 * 269.97223 * 7 6 5 13 13 C 1.50706 * 110.48460 * 94.01393 * 5 4 3 14 14 O 1.20821 * 120.00119 * 1.83862 * 13 5 4 15 15 O 1.34228 * 119.99788 * 181.84373 * 13 5 4 16 16 C 1.45202 * 116.99773 * 180.02562 * 15 13 5 17 17 C 1.52998 * 109.46894 * 179.97438 * 16 15 13 18 18 C 1.53001 * 109.46914 * 179.97438 * 17 16 15 19 19 C 1.50707 * 109.47307 * 179.97438 * 18 17 16 20 20 H 1.08003 * 119.99710 * 359.97438 * 19 18 17 21 21 C 1.37869 * 120.00389 * 180.02562 * 19 18 17 22 22 N 1.31521 * 119.99925 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00399 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46724 * 59.99750 * 23 21 19 25 25 H 1.48494 * 109.47473 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47082 * 299.99947 * 23 21 19 27 27 C 1.34420 * 124.34962 * 179.97438 * 2 1 3 28 28 O 1.21281 * 124.94010 * 0.44539 * 27 2 1 29 29 H 1.08994 * 109.47153 * 90.00106 * 1 2 3 30 30 H 1.09006 * 109.47451 * 210.00480 * 1 2 3 31 31 H 1.09005 * 109.47197 * 330.00081 * 1 2 3 32 32 H 1.09001 * 110.24807 * 43.98285 * 3 2 1 33 33 H 1.09003 * 110.24765 * 281.98305 * 3 2 1 34 34 H 1.08998 * 110.96694 * 267.29567 * 4 3 2 35 35 H 1.08999 * 110.96708 * 143.53286 * 4 3 2 36 36 H 1.08992 * 109.47214 * 60.00082 * 6 5 4 37 37 H 1.08996 * 109.46710 * 299.99849 * 6 5 4 38 38 H 1.08001 * 119.99730 * 359.97438 * 8 7 6 39 39 H 1.08000 * 120.00376 * 179.97438 * 9 8 7 40 40 H 1.08000 * 120.00616 * 179.72578 * 10 9 8 41 41 H 1.08001 * 120.00299 * 179.97438 * 11 10 9 42 42 H 1.07997 * 120.00455 * 0.02562 * 12 7 6 43 43 H 1.08999 * 109.46938 * 299.98928 * 16 15 13 44 44 H 1.08990 * 109.47460 * 59.99532 * 16 15 13 45 45 H 1.08994 * 109.47499 * 299.99550 * 17 16 15 46 46 H 1.09004 * 109.47281 * 59.99900 * 17 16 15 47 47 H 1.09001 * 109.47478 * 299.99801 * 18 17 16 48 48 H 1.08999 * 109.47322 * 59.99718 * 18 17 16 49 49 H 0.96993 * 120.00131 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7010 0.7487 0.4357 5 6 3.6898 -0.7379 0.0102 6 6 4.4517 -1.5914 1.0260 7 6 4.4270 -3.0336 0.5893 8 6 5.4276 -3.5256 -0.2277 9 6 5.4051 -4.8486 -0.6278 10 6 4.3825 -5.6798 -0.2102 11 6 3.3827 -5.1880 0.6080 12 6 3.4039 -3.8644 1.0063 13 6 4.2868 -0.8975 -1.3643 14 8 4.7194 0.0662 -1.9507 15 8 4.3378 -2.1104 -1.9370 16 6 4.9268 -2.1895 -3.2619 17 6 4.8977 -3.6402 -3.7471 18 6 5.5177 -3.7234 -5.1434 19 6 5.4896 -5.1525 -5.6212 20 1 5.0717 -5.9242 -4.9917 21 6 5.9983 -5.4749 -6.8614 22 7 6.5077 -4.5352 -7.6278 23 14 5.9642 -7.2462 -7.4533 24 1 4.5589 -7.7231 -7.5069 25 1 6.5658 -7.3270 -8.8085 26 1 6.7401 -8.0967 -6.5153 27 6 2.2234 -1.1098 0.0005 28 8 1.7945 -2.2442 -0.0067 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.8984 1.9383 0.7102 33 1 2.3306 1.6429 -1.0004 34 1 3.8268 0.8448 1.5141 35 1 4.4754 1.3010 -0.0966 36 1 3.9800 -1.4995 2.0043 37 1 5.4844 -1.2482 1.0868 38 1 6.2268 -2.8764 -0.5534 39 1 6.1866 -5.2330 -1.2665 40 1 4.3625 -6.7123 -0.5263 41 1 2.5835 -5.8373 0.9340 42 1 2.6222 -3.4800 1.6446 43 1 4.3580 -1.5644 -3.9502 44 1 5.9586 -1.8406 -3.2223 45 1 5.4666 -4.2651 -3.0588 46 1 3.8659 -3.9895 -3.7867 47 1 4.9484 -3.0986 -5.8317 48 1 6.5494 -3.3740 -5.1043 49 1 6.8652 -4.7619 -8.5004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845209709.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:24 Heat of formation + Delta-G solvation = -109.975515 kcal Electronic energy + Delta-G solvation = -31871.411417 eV Core-core repulsion = 27762.814468 eV Total energy + Delta-G solvation = -4108.596949 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.68443 -40.76270 -39.80934 -38.12047 -37.28912 -36.01381 -35.56366 -33.66513 -32.44510 -31.59406 -29.77525 -28.92428 -27.94985 -26.29180 -25.42012 -23.91777 -23.39785 -22.29777 -22.09309 -21.85141 -20.41175 -18.88908 -18.59504 -17.98978 -17.80897 -17.67286 -17.33416 -16.56193 -16.51920 -16.06611 -15.83894 -15.68431 -15.46839 -14.85027 -14.77584 -14.73457 -14.27485 -14.13761 -14.07624 -13.81859 -13.75609 -13.68194 -13.51621 -13.33962 -13.10160 -13.05816 -12.82057 -12.65654 -12.55177 -12.31009 -12.24004 -12.08406 -11.85910 -11.74131 -11.69322 -11.44777 -11.38330 -11.25616 -10.79759 -10.58322 -9.77941 -9.46917 -9.34746 -8.23136 -6.34339 0.59294 0.72892 0.86326 1.27310 1.38938 1.42088 1.50010 1.79080 1.99849 2.39660 2.97802 3.07099 3.10447 3.24357 3.54798 3.75680 3.91055 3.95437 4.00894 4.07114 4.16068 4.28950 4.29382 4.37136 4.38120 4.39284 4.50351 4.59154 4.64726 4.73505 4.76130 4.80237 4.84721 4.86046 4.93048 4.95513 5.03979 5.05311 5.29414 5.32542 5.37669 5.48891 5.50378 5.61373 5.74899 5.78062 5.81514 5.84863 5.94956 6.18126 6.31643 6.57712 6.80202 7.03098 7.34771 8.88923 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012943 B = 0.003300 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.857906 B = 8483.336838 C = 9408.087531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.622 5.622 3 C 0.096 3.904 4 C -0.113 4.113 5 C -0.083 4.083 6 C -0.052 4.052 7 C -0.103 4.103 8 C -0.086 4.086 9 C -0.139 4.139 10 C -0.125 4.125 11 C -0.143 4.143 12 C -0.068 4.068 13 C 0.471 3.529 14 O -0.522 6.522 15 O -0.330 6.330 16 C 0.076 3.924 17 C -0.089 4.089 18 C 0.031 3.969 19 C -0.541 4.541 20 H 0.060 0.940 21 C 0.002 3.998 22 N -0.932 5.932 23 Si 0.965 3.035 24 H -0.269 1.269 25 H -0.281 1.281 26 H -0.264 1.264 27 C 0.515 3.485 28 O -0.524 6.524 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.110 0.890 32 H 0.127 0.873 33 H 0.066 0.934 34 H 0.137 0.863 35 H 0.107 0.893 36 H 0.117 0.883 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.113 0.887 40 H 0.122 0.878 41 H 0.127 0.873 42 H 0.122 0.878 43 H 0.053 0.947 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.047 0.953 47 H -0.008 1.008 48 H 0.000 1.000 49 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.998 12.596 24.842 29.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.356 5.356 3 C -0.026 4.026 4 C -0.150 4.150 5 C -0.088 4.088 6 C -0.089 4.089 7 C -0.103 4.103 8 C -0.104 4.104 9 C -0.157 4.157 10 C -0.143 4.143 11 C -0.161 4.161 12 C -0.086 4.086 13 C 0.314 3.686 14 O -0.412 6.412 15 O -0.245 6.245 16 C 0.003 3.997 17 C -0.126 4.126 18 C -0.007 4.007 19 C -0.579 4.579 20 H 0.079 0.921 21 C -0.196 4.196 22 N -0.572 5.572 23 Si 0.789 3.211 24 H -0.194 1.194 25 H -0.207 1.207 26 H -0.189 1.189 27 C 0.301 3.699 28 O -0.399 6.399 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.128 0.872 32 H 0.145 0.855 33 H 0.084 0.916 34 H 0.155 0.845 35 H 0.126 0.874 36 H 0.135 0.865 37 H 0.123 0.877 38 H 0.126 0.874 39 H 0.131 0.869 40 H 0.140 0.860 41 H 0.145 0.855 42 H 0.140 0.860 43 H 0.071 0.929 44 H 0.087 0.913 45 H 0.091 0.909 46 H 0.066 0.934 47 H 0.010 0.990 48 H 0.018 0.982 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.125 12.304 24.452 28.854 hybrid contribution 0.143 -0.862 -1.537 1.767 sum -8.982 11.442 22.916 27.143 Atomic orbital electron populations 1.21735 0.76273 1.04583 1.02211 1.48340 1.07653 1.07197 1.72399 1.22411 0.89791 0.87043 1.03353 1.22934 0.98182 0.88568 1.05364 1.21526 0.94957 1.01953 0.90364 1.20591 1.01882 0.89238 0.97201 1.19684 0.95636 0.95688 0.99269 1.20841 0.98243 0.94968 0.96366 1.21098 0.99516 0.94636 1.00466 1.21247 0.94942 1.00118 0.97997 1.21215 0.98889 0.96400 0.99558 1.20937 0.95868 0.92862 0.98895 1.23376 0.75948 0.81046 0.88216 1.90630 1.45494 1.40641 1.64421 1.86818 1.73136 1.32042 1.32476 1.23113 0.97601 0.99127 0.79890 1.21443 1.00901 0.92765 0.97505 1.18901 0.94632 0.96219 0.90911 1.21530 1.39855 0.94436 1.02095 0.92130 1.25953 0.94628 1.02133 0.96844 1.70086 1.41209 1.34909 1.10999 0.85500 0.78805 0.79293 0.77484 1.19361 1.20652 1.18921 1.20357 0.88006 0.84985 0.76597 1.90772 1.77927 1.21660 1.49574 0.93159 0.91294 0.87203 0.85506 0.91599 0.84537 0.87445 0.86478 0.87677 0.87405 0.86924 0.85988 0.85536 0.85982 0.92856 0.91322 0.90878 0.93382 0.98985 0.98167 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.23 10.96 127.77 1.40 2.63 16 2 N -0.62 -10.90 3.33 -842.89 -2.81 -13.71 16 3 C 0.10 1.10 7.35 86.83 0.64 1.74 16 4 C -0.11 -1.37 6.04 31.65 0.19 -1.18 16 5 C -0.08 -1.77 0.61 -52.93 -0.03 -1.80 16 6 C -0.05 -0.95 4.41 29.85 0.13 -0.82 16 7 C -0.10 -2.67 3.87 -19.87 -0.08 -2.75 16 8 C -0.09 -2.53 6.70 22.27 0.15 -2.38 16 9 C -0.14 -4.39 8.56 22.27 0.19 -4.20 16 10 C -0.13 -3.77 10.05 22.27 0.22 -3.54 16 11 C -0.14 -4.03 10.05 22.27 0.22 -3.80 16 12 C -0.07 -1.83 7.21 22.27 0.16 -1.67 16 13 C 0.47 14.30 6.42 71.24 0.46 14.76 16 14 O -0.52 -17.40 15.21 21.98 0.33 -17.07 16 15 O -0.33 -11.72 6.15 -51.40 -0.32 -12.04 16 16 C 0.08 3.02 5.47 71.98 0.39 3.41 16 17 C -0.09 -3.97 5.53 30.59 0.17 -3.80 16 18 C 0.03 1.67 4.97 29.85 0.15 1.82 16 19 C -0.54 -31.58 9.11 25.60 0.23 -31.35 16 20 H 0.06 3.41 7.74 -2.91 -0.02 3.38 16 21 C 0.00 0.14 5.46 84.65 0.46 0.60 16 22 N -0.93 -57.51 13.29 21.45 0.28 -57.22 16 23 Si 0.97 45.07 29.54 68.60 2.03 47.09 16 24 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 25 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 26 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 27 C 0.52 12.55 6.72 87.90 0.59 13.14 16 28 O -0.52 -16.38 13.35 -3.03 -0.04 -16.42 16 29 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.07 1.04 7.93 -2.38 -0.02 1.02 16 31 H 0.11 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.14 0.62 7.91 -2.39 -0.02 0.60 16 35 H 0.11 1.48 6.94 -2.39 -0.02 1.46 16 36 H 0.12 1.48 8.09 -2.39 -0.02 1.46 16 37 H 0.10 1.56 8.08 -2.39 -0.02 1.54 16 38 H 0.11 3.08 7.93 -2.91 -0.02 3.05 16 39 H 0.11 3.60 7.64 -2.91 -0.02 3.58 16 40 H 0.12 3.35 8.06 -2.91 -0.02 3.33 16 41 H 0.13 3.07 8.06 -2.91 -0.02 3.05 16 42 H 0.12 3.04 7.15 -2.91 -0.02 3.02 16 43 H 0.05 2.18 8.13 -2.39 -0.02 2.16 16 44 H 0.07 2.65 8.13 -2.39 -0.02 2.63 16 45 H 0.07 3.15 6.07 -2.39 -0.01 3.13 16 46 H 0.05 2.22 8.14 -2.38 -0.02 2.20 16 47 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 48 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 49 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -76.86 394.83 6.07 -70.80 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: 0.93 Total: 17.76 kcal Atomic # 6 Polarization: -24.84 SS G_CDS: 5.65 Total: -19.18 kcal Atomic # 7 Polarization: -68.41 SS G_CDS: -2.52 Total: -70.93 kcal Atomic # 8 Polarization: -45.51 SS G_CDS: -0.02 Total: -45.53 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -76.86 6.07 -70.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845209709.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.179 kcal (2) G-P(sol) polarization free energy of solvation -76.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds