Wall clock time and date at job start Wed Apr 1 2020 04:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47037 * 2 1 4 4 C 1.46509 * 120.00134 * 270.00551 * 3 2 1 5 5 C 1.50703 * 109.46480 * 269.99948 * 4 3 2 6 6 H 1.07994 * 120.00246 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99464 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00086 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99882 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47345 * 89.99187 * 9 7 5 11 11 H 1.48498 * 109.47422 * 209.99590 * 9 7 5 12 12 H 1.48501 * 109.47258 * 329.99734 * 9 7 5 13 13 C 1.34774 * 120.00158 * 90.00185 * 3 2 1 14 14 O 1.21284 * 120.00570 * 180.02562 * 13 3 2 15 15 C 1.50703 * 120.00019 * 359.97438 * 13 3 2 16 16 O 1.45193 * 109.47256 * 180.02562 * 15 13 3 17 17 C 1.34236 * 117.00269 * 180.02562 * 16 15 13 18 18 O 1.20826 * 119.99280 * 359.97438 * 17 16 15 19 19 C 1.50690 * 120.00510 * 179.97438 * 17 16 15 20 20 H 1.09007 * 115.55011 * 34.27667 * 19 17 16 21 21 C 1.53000 * 117.50063 * 248.60878 * 19 17 16 22 22 C 1.53002 * 60.02940 * 252.49714 * 21 19 17 23 23 H 1.09000 * 117.49996 * 107.50493 * 22 21 19 24 24 C 1.50706 * 117.49668 * 252.51929 * 22 21 19 25 25 C 1.38258 * 120.00033 * 8.61157 * 24 22 21 26 26 C 1.38206 * 120.00001 * 180.02562 * 25 24 22 27 27 C 1.38265 * 119.99860 * 359.95765 * 26 25 24 28 28 C 1.38202 * 120.00041 * 0.02562 * 27 26 25 29 29 C 1.38218 * 119.99840 * 188.33779 * 24 22 21 30 30 C 1.50696 * 119.99883 * 359.97438 * 29 24 22 31 31 H 1.09002 * 109.47201 * 299.99425 * 1 2 3 32 32 H 1.08999 * 109.47821 * 59.99939 * 1 2 3 33 33 H 1.09003 * 109.47149 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47201 * 240.00575 * 2 1 3 35 35 H 1.08995 * 109.47414 * 120.00356 * 2 1 3 36 36 H 1.08997 * 109.46797 * 29.99388 * 4 3 2 37 37 H 1.08995 * 109.47058 * 150.00172 * 4 3 2 38 38 H 0.97004 * 120.00025 * 180.02562 * 8 7 5 39 39 H 1.09000 * 109.46495 * 59.99803 * 15 13 3 40 40 H 1.08996 * 109.47131 * 300.00640 * 15 13 3 41 41 H 1.09002 * 117.49833 * 359.97438 * 21 19 17 42 42 H 1.09002 * 117.49953 * 144.99860 * 21 19 17 43 43 H 1.07998 * 119.99982 * 359.97438 * 25 24 22 44 44 H 1.08000 * 120.00495 * 179.97438 * 26 25 24 45 45 H 1.08005 * 119.99287 * 180.02562 * 27 26 25 46 46 H 1.08004 * 119.99791 * 179.97438 * 28 27 26 47 47 H 1.08999 * 109.47477 * 90.00276 * 30 29 24 48 48 H 1.09001 * 109.46858 * 210.00314 * 30 29 24 49 49 H 1.09004 * 109.47412 * 329.99658 * 30 29 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2623 2.0719 -1.2688 5 6 3.6856 1.8351 -1.7038 6 1 4.3427 1.2309 -1.0959 7 6 4.1492 2.3906 -2.8775 8 7 3.3491 3.1267 -3.6176 9 14 5.9136 2.0977 -3.4165 10 1 5.9775 0.8769 -4.2597 11 1 6.3925 3.2654 -4.1990 12 1 6.7735 1.9178 -2.2193 13 6 2.2429 2.0165 1.1672 14 8 2.6467 3.1602 1.1672 15 6 1.9913 1.3063 2.4723 16 8 2.3053 2.1960 3.5759 17 6 2.1343 1.7124 4.8163 18 8 1.7350 0.5830 4.9746 19 6 2.4404 2.5777 6.0114 20 1 2.2286 3.6400 5.8893 21 6 3.6444 2.1921 6.8732 22 6 2.2251 1.9688 7.3992 23 1 1.8620 0.9422 7.4478 24 6 1.7362 2.8838 8.4923 25 6 2.4864 3.9859 8.8584 26 6 2.0383 4.8248 9.8612 27 6 0.8393 4.5623 10.4976 28 6 0.0891 3.4609 10.1314 29 6 0.5349 2.6245 9.1249 30 6 -0.2861 1.4270 8.7211 31 1 -0.3634 0.5137 0.8900 32 1 -0.3635 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5137 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 1.5815 1.6877 -2.0284 37 1 2.0954 3.1411 -1.1384 38 1 3.6752 3.5172 -4.4435 39 1 2.6211 0.4186 2.5301 40 1 0.9432 1.0125 2.5298 41 1 4.2149 1.3121 6.5759 42 1 4.2246 3.0006 7.3180 43 1 3.4231 4.1908 8.3613 44 1 2.6245 5.6855 10.1475 45 1 0.4889 5.2182 11.2810 46 1 -0.8473 3.2557 10.6289 47 1 0.0071 0.5661 9.3219 48 1 -1.3428 1.6399 8.8827 49 1 -0.1165 1.2089 7.6667 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850044545.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:33 Heat of formation + Delta-G solvation = -72.821465 kcal Electronic energy + Delta-G solvation = -29235.246986 eV Core-core repulsion = 25128.261157 eV Total energy + Delta-G solvation = -4106.985828 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.93389 -39.96179 -38.97869 -37.25141 -36.05786 -35.30920 -33.16409 -32.85365 -30.99977 -30.19616 -29.29186 -27.25703 -26.73935 -24.98785 -24.26450 -23.09064 -22.53934 -21.75005 -20.93083 -20.15035 -18.67554 -18.14994 -16.98150 -16.83325 -16.61610 -16.35782 -16.05926 -15.62450 -15.24048 -15.18729 -14.74205 -14.38484 -14.27806 -14.08426 -13.65445 -13.45003 -13.37187 -13.11708 -12.87844 -12.59741 -12.48904 -12.43411 -12.24805 -12.11836 -12.07063 -11.64143 -11.52493 -11.28176 -11.24730 -11.06216 -10.95582 -10.89234 -10.83405 -10.63288 -10.57811 -10.51857 -10.15874 -9.67410 -9.10114 -9.01166 -8.80776 -8.45945 -7.76780 -6.06890 -4.11770 0.93413 1.06900 1.98266 2.37427 3.23034 3.24879 3.29114 3.36024 3.40918 3.67525 3.82290 4.21773 4.32422 4.41908 4.43683 4.55485 4.59505 4.71774 4.79962 4.85554 4.88778 5.00051 5.13198 5.19556 5.21083 5.27734 5.30466 5.34434 5.35490 5.36163 5.54627 5.57178 5.58608 5.69734 5.71667 5.73797 5.88166 5.98000 6.17623 6.17764 6.20095 6.32444 6.34435 6.43353 6.68090 6.98328 7.38452 7.45765 7.67341 7.89164 8.19145 8.28230 8.83276 8.98054 9.53210 11.01244 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017587 B = 0.001985 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.727154 B =14100.476351 C =14910.791201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 N -0.592 5.592 4 C 0.248 3.752 5 C -0.528 4.528 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.507 3.493 14 O -0.518 6.518 15 C 0.049 3.951 16 O -0.323 6.323 17 C 0.492 3.508 18 O -0.512 6.512 19 C -0.152 4.152 20 H 0.140 0.860 21 C -0.139 4.139 22 C -0.082 4.082 23 H 0.131 0.869 24 C -0.057 4.057 25 C -0.113 4.113 26 C -0.124 4.124 27 C -0.118 4.118 28 C -0.120 4.120 29 C -0.072 4.072 30 C -0.122 4.122 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.064 0.936 36 H 0.036 0.964 37 H 0.045 0.955 38 H 0.264 0.736 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.109 0.891 42 H 0.115 0.885 43 H 0.126 0.874 44 H 0.123 0.877 45 H 0.121 0.879 46 H 0.122 0.878 47 H 0.072 0.928 48 H 0.067 0.933 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.441 -3.629 26.703 27.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.326 5.326 4 C 0.129 3.871 5 C -0.567 4.567 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.291 3.709 14 O -0.394 6.394 15 C -0.028 4.028 16 O -0.237 6.237 17 C 0.336 3.664 18 O -0.401 6.401 19 C -0.171 4.171 20 H 0.157 0.843 21 C -0.176 4.176 22 C -0.100 4.100 23 H 0.149 0.851 24 C -0.057 4.057 25 C -0.131 4.131 26 C -0.142 4.142 27 C -0.136 4.136 28 C -0.138 4.138 29 C -0.072 4.072 30 C -0.178 4.178 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.082 0.918 36 H 0.054 0.946 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.127 0.873 42 H 0.133 0.867 43 H 0.144 0.856 44 H 0.141 0.859 45 H 0.139 0.861 46 H 0.140 0.860 47 H 0.090 0.910 48 H 0.085 0.915 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.352 -3.236 26.499 27.441 hybrid contribution 0.850 -0.272 -0.537 1.041 sum -5.502 -3.508 25.962 26.770 Atomic orbital electron populations 1.22234 0.96530 1.01696 1.02422 1.21507 0.93760 0.83957 1.03019 1.48212 1.63828 1.13402 1.07129 1.19335 0.96485 0.93715 0.77546 1.21423 0.96841 1.32069 1.06358 0.92393 1.24940 0.97945 0.94856 0.96384 1.69930 1.35726 1.33302 1.14312 0.86479 0.84569 0.77681 0.78593 1.20629 1.21055 1.19879 1.19703 0.79752 0.87163 0.84286 1.90720 1.44462 1.17477 1.86723 1.22993 1.02716 0.92642 0.84426 1.86556 1.78170 1.44857 1.14127 1.22551 0.73909 0.85903 0.84067 1.90644 1.42788 1.19911 1.86750 1.21846 1.07173 1.00732 0.87365 0.84259 1.23245 0.90271 1.04267 0.99788 1.21218 0.99104 0.99964 0.89718 0.85118 1.18926 0.94722 0.95545 0.96538 1.21092 0.99927 0.94384 0.97683 1.21116 0.96669 0.99639 0.96736 1.21161 0.95087 0.97439 0.99913 1.21031 1.00166 0.95196 0.97441 1.19753 0.94482 0.97159 0.95804 1.20884 0.99005 0.95362 1.02566 0.93144 0.91771 0.91889 0.89399 0.91774 0.94616 0.93698 0.92666 0.88653 0.88718 0.87277 0.86681 0.85612 0.85942 0.86078 0.85975 0.90959 0.91452 0.90765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 10.24 37.16 0.38 -1.88 16 2 C 0.10 1.60 5.93 -4.05 -0.02 1.58 16 3 N -0.59 -12.43 2.46 -175.06 -0.43 -12.86 16 4 C 0.25 6.41 5.16 -5.19 -0.03 6.38 16 5 C -0.53 -14.87 9.39 -34.44 -0.32 -15.19 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 9 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.51 10.80 7.75 -10.99 -0.09 10.71 16 14 O -0.52 -13.46 16.08 -14.11 -0.23 -13.69 16 15 C 0.05 0.81 4.50 36.01 0.16 0.98 16 16 O -0.32 -5.47 9.75 -45.92 -0.45 -5.92 16 17 C 0.49 6.99 7.74 36.00 0.28 7.27 16 18 O -0.51 -7.79 16.01 -18.75 -0.30 -8.09 16 19 C -0.15 -1.65 5.94 -91.74 -0.54 -2.19 16 20 H 0.14 1.43 8.14 -51.93 -0.42 1.00 16 21 C -0.14 -1.19 9.56 -26.73 -0.26 -1.44 16 22 C -0.08 -0.76 4.66 -91.73 -0.43 -1.19 16 23 H 0.13 1.27 6.45 -51.93 -0.34 0.93 16 24 C -0.06 -0.52 5.61 -104.62 -0.59 -1.11 16 25 C -0.11 -0.93 9.30 -39.59 -0.37 -1.30 16 26 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 27 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 28 C -0.12 -0.94 9.70 -39.59 -0.38 -1.33 16 29 C -0.07 -0.63 5.88 -104.62 -0.62 -1.25 16 30 C -0.12 -0.92 9.33 36.00 0.34 -0.59 16 31 H 0.05 0.64 7.22 -51.93 -0.37 0.27 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 1.42 8.07 -51.93 -0.42 1.00 16 35 H 0.06 0.85 6.44 -51.93 -0.33 0.51 16 36 H 0.04 0.92 8.07 -51.93 -0.42 0.51 16 37 H 0.04 1.31 7.42 -51.93 -0.39 0.93 16 38 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.10 1.41 7.39 -51.93 -0.38 1.02 16 40 H 0.09 1.35 7.18 -51.93 -0.37 0.98 16 41 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.12 0.76 6.18 -51.93 -0.32 0.44 16 43 H 0.13 0.84 6.02 -52.49 -0.32 0.53 16 44 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 45 H 0.12 0.64 8.06 -52.48 -0.42 0.22 16 46 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 47 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 48 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 49 H 0.07 0.64 6.66 -51.93 -0.35 0.29 16 LS Contribution 410.87 15.07 6.19 6.19 Total: -1.00 -34.66 410.87 -10.23 -44.89 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -7.35 Total: -0.12 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -3.38 Total: -1.52 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.31 Total: -38.53 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -0.98 Total: -27.70 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.66 -10.23 -44.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850044545.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.933 kcal (2) G-P(sol) polarization free energy of solvation -34.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds