Wall clock time and date at job start Wed Apr 1 2020 04:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47037 * 2 1 4 4 C 1.46509 * 120.00134 * 270.00551 * 3 2 1 5 5 C 1.50703 * 109.46480 * 269.99948 * 4 3 2 6 6 H 1.07994 * 120.00246 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99464 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00086 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99882 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47345 * 89.99187 * 9 7 5 11 11 H 1.48498 * 109.47422 * 209.99590 * 9 7 5 12 12 H 1.48501 * 109.47258 * 329.99734 * 9 7 5 13 13 C 1.34774 * 120.00158 * 90.00185 * 3 2 1 14 14 O 1.21284 * 120.00570 * 180.02562 * 13 3 2 15 15 C 1.50703 * 120.00019 * 359.97438 * 13 3 2 16 16 O 1.45193 * 109.47256 * 180.02562 * 15 13 3 17 17 C 1.34236 * 117.00269 * 180.02562 * 16 15 13 18 18 O 1.20826 * 119.99280 * 359.97438 * 17 16 15 19 19 C 1.50690 * 120.00510 * 179.97438 * 17 16 15 20 20 H 1.09007 * 115.55011 * 34.27667 * 19 17 16 21 21 C 1.53000 * 117.50063 * 248.60878 * 19 17 16 22 22 C 1.53002 * 60.02940 * 252.49714 * 21 19 17 23 23 H 1.09000 * 117.49996 * 107.50493 * 22 21 19 24 24 C 1.50706 * 117.49668 * 252.51929 * 22 21 19 25 25 C 1.38258 * 120.00033 * 8.61157 * 24 22 21 26 26 C 1.38206 * 120.00001 * 180.02562 * 25 24 22 27 27 C 1.38265 * 119.99860 * 359.95765 * 26 25 24 28 28 C 1.38202 * 120.00041 * 0.02562 * 27 26 25 29 29 C 1.38218 * 119.99840 * 188.33779 * 24 22 21 30 30 C 1.50696 * 119.99883 * 359.97438 * 29 24 22 31 31 H 1.09002 * 109.47201 * 299.99425 * 1 2 3 32 32 H 1.08999 * 109.47821 * 59.99939 * 1 2 3 33 33 H 1.09003 * 109.47149 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47201 * 240.00575 * 2 1 3 35 35 H 1.08995 * 109.47414 * 120.00356 * 2 1 3 36 36 H 1.08997 * 109.46797 * 29.99388 * 4 3 2 37 37 H 1.08995 * 109.47058 * 150.00172 * 4 3 2 38 38 H 0.97004 * 120.00025 * 180.02562 * 8 7 5 39 39 H 1.09000 * 109.46495 * 59.99803 * 15 13 3 40 40 H 1.08996 * 109.47131 * 300.00640 * 15 13 3 41 41 H 1.09002 * 117.49833 * 359.97438 * 21 19 17 42 42 H 1.09002 * 117.49953 * 144.99860 * 21 19 17 43 43 H 1.07998 * 119.99982 * 359.97438 * 25 24 22 44 44 H 1.08000 * 120.00495 * 179.97438 * 26 25 24 45 45 H 1.08005 * 119.99287 * 180.02562 * 27 26 25 46 46 H 1.08004 * 119.99791 * 179.97438 * 28 27 26 47 47 H 1.08999 * 109.47477 * 90.00276 * 30 29 24 48 48 H 1.09001 * 109.46858 * 210.00314 * 30 29 24 49 49 H 1.09004 * 109.47412 * 329.99658 * 30 29 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2623 2.0719 -1.2688 5 6 3.6856 1.8351 -1.7038 6 1 4.3427 1.2309 -1.0959 7 6 4.1492 2.3906 -2.8775 8 7 3.3491 3.1267 -3.6176 9 14 5.9136 2.0977 -3.4165 10 1 5.9775 0.8769 -4.2597 11 1 6.3925 3.2654 -4.1990 12 1 6.7735 1.9178 -2.2193 13 6 2.2429 2.0165 1.1672 14 8 2.6467 3.1602 1.1672 15 6 1.9913 1.3063 2.4723 16 8 2.3053 2.1960 3.5759 17 6 2.1343 1.7124 4.8163 18 8 1.7350 0.5830 4.9746 19 6 2.4404 2.5777 6.0114 20 1 2.2286 3.6400 5.8893 21 6 3.6444 2.1921 6.8732 22 6 2.2251 1.9688 7.3992 23 1 1.8620 0.9422 7.4478 24 6 1.7362 2.8838 8.4923 25 6 2.4864 3.9859 8.8584 26 6 2.0383 4.8248 9.8612 27 6 0.8393 4.5623 10.4976 28 6 0.0891 3.4609 10.1314 29 6 0.5349 2.6245 9.1249 30 6 -0.2861 1.4270 8.7211 31 1 -0.3634 0.5137 0.8900 32 1 -0.3635 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5137 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 1.5815 1.6877 -2.0284 37 1 2.0954 3.1411 -1.1384 38 1 3.6752 3.5172 -4.4435 39 1 2.6211 0.4186 2.5301 40 1 0.9432 1.0125 2.5298 41 1 4.2149 1.3121 6.5759 42 1 4.2246 3.0006 7.3180 43 1 3.4231 4.1908 8.3613 44 1 2.6245 5.6855 10.1475 45 1 0.4889 5.2182 11.2810 46 1 -0.8473 3.2557 10.6289 47 1 0.0071 0.5661 9.3219 48 1 -1.3428 1.6399 8.8827 49 1 -0.1165 1.2089 7.6667 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850044545.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:32 Heat of formation + Delta-G solvation = -90.089038 kcal Electronic energy + Delta-G solvation = -29235.995764 eV Core-core repulsion = 25128.261157 eV Total energy + Delta-G solvation = -4107.734606 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.00311 -40.90509 -40.38247 -38.20796 -37.18244 -36.93141 -34.94858 -33.73240 -31.80886 -31.59972 -30.72503 -28.58436 -27.79285 -26.09525 -24.93874 -24.75016 -24.08040 -22.33691 -21.84038 -20.94765 -20.26458 -19.20713 -18.66220 -18.10363 -17.91427 -17.67169 -17.28173 -17.01151 -16.35542 -16.15581 -15.93400 -15.78110 -15.14782 -14.94435 -14.74547 -14.71476 -14.52948 -14.20807 -13.95100 -13.91556 -13.62347 -13.46431 -13.29805 -13.17539 -13.08202 -13.07053 -12.88613 -12.69254 -12.51929 -12.24366 -12.14352 -12.07996 -11.97504 -11.82154 -11.74286 -11.73116 -11.62908 -11.47419 -10.75867 -10.65117 -9.67776 -9.56530 -9.42116 -8.24087 -6.38594 0.31217 0.49311 0.93171 1.20532 1.36470 1.39557 1.49624 1.59503 2.28827 2.42255 2.56620 3.00580 3.05888 3.39302 3.45004 3.52920 3.66248 3.80995 3.93263 3.93652 3.99236 4.06142 4.13380 4.18038 4.23737 4.36373 4.45564 4.57240 4.63184 4.68795 4.76805 4.79962 4.84664 4.87386 4.92901 4.96864 5.01323 5.05428 5.16354 5.17373 5.22843 5.31515 5.34554 5.52898 5.60052 5.64246 5.73712 5.78273 6.02984 6.12681 6.49413 6.62466 6.70417 7.19417 7.35185 8.83367 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017587 B = 0.001985 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.727154 B =14100.476351 C =14910.791201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.595 5.595 4 C 0.263 3.737 5 C -0.545 4.545 6 H 0.054 0.946 7 C 0.007 3.993 8 N -0.927 5.927 9 Si 0.969 3.031 10 H -0.262 1.262 11 H -0.281 1.281 12 H -0.273 1.273 13 C 0.499 3.501 14 O -0.578 6.578 15 C 0.062 3.938 16 O -0.346 6.346 17 C 0.493 3.507 18 O -0.524 6.524 19 C -0.169 4.169 20 H 0.142 0.858 21 C -0.125 4.125 22 C -0.071 4.071 23 H 0.125 0.875 24 C -0.074 4.074 25 C -0.122 4.122 26 C -0.132 4.132 27 C -0.122 4.122 28 C -0.130 4.130 29 C -0.088 4.088 30 C -0.119 4.119 31 H 0.056 0.944 32 H 0.044 0.956 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.098 0.902 36 H 0.030 0.970 37 H -0.001 1.001 38 H 0.268 0.732 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.112 0.888 42 H 0.137 0.863 43 H 0.138 0.862 44 H 0.141 0.859 45 H 0.142 0.858 46 H 0.138 0.862 47 H 0.080 0.920 48 H 0.076 0.924 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.963 -4.993 28.633 29.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.327 5.327 4 C 0.142 3.858 5 C -0.583 4.583 6 H 0.073 0.927 7 C -0.192 4.192 8 N -0.567 5.567 9 Si 0.793 3.207 10 H -0.187 1.187 11 H -0.206 1.206 12 H -0.198 1.198 13 C 0.286 3.714 14 O -0.458 6.458 15 C -0.015 4.015 16 O -0.262 6.262 17 C 0.338 3.662 18 O -0.413 6.413 19 C -0.188 4.188 20 H 0.160 0.840 21 C -0.162 4.162 22 C -0.089 4.089 23 H 0.143 0.857 24 C -0.074 4.074 25 C -0.139 4.139 26 C -0.150 4.150 27 C -0.140 4.140 28 C -0.147 4.147 29 C -0.088 4.088 30 C -0.176 4.176 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.117 0.883 34 H 0.101 0.899 35 H 0.116 0.884 36 H 0.048 0.952 37 H 0.017 0.983 38 H 0.077 0.923 39 H 0.136 0.864 40 H 0.139 0.861 41 H 0.130 0.870 42 H 0.155 0.845 43 H 0.156 0.844 44 H 0.159 0.841 45 H 0.159 0.841 46 H 0.156 0.844 47 H 0.098 0.902 48 H 0.095 0.905 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.903 -4.660 28.445 29.422 hybrid contribution 0.636 0.164 -1.072 1.257 sum -5.268 -4.496 27.372 28.235 Atomic orbital electron populations 1.22178 0.94339 1.03809 1.01813 1.21870 0.95550 0.80952 1.04439 1.48211 1.63551 1.15270 1.05660 1.18798 0.95652 0.91640 0.79734 1.21693 0.97774 1.32208 1.06637 0.92726 1.25869 1.02480 0.94422 0.96434 1.70048 1.37795 1.34036 1.14772 0.85397 0.78880 0.78220 0.78197 1.18729 1.20642 1.19813 1.20547 0.78360 0.86654 0.85860 1.90681 1.47158 1.20177 1.87756 1.22843 1.04692 0.92045 0.81905 1.86564 1.78776 1.45682 1.15155 1.23110 0.73218 0.86172 0.83684 1.90626 1.43448 1.20550 1.86688 1.21929 1.09737 1.00405 0.86710 0.84003 1.23430 0.89909 1.04895 0.97918 1.21164 0.99557 0.99552 0.88609 0.85742 1.19012 0.95334 0.96147 0.96895 1.21315 1.00422 0.94203 0.97979 1.21423 0.97016 1.00095 0.96464 1.21490 0.94922 0.97469 1.00150 1.21294 1.00933 0.95194 0.97323 1.19986 0.94694 0.97774 0.96326 1.20870 0.99527 0.95441 1.01733 0.92503 0.93675 0.88329 0.89910 0.88402 0.95196 0.98290 0.92346 0.86360 0.86099 0.86998 0.84508 0.84389 0.84125 0.84052 0.84402 0.90172 0.90502 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.02 10.24 71.98 0.74 -3.28 16 2 C 0.09 2.82 5.93 86.38 0.51 3.34 16 3 N -0.59 -25.36 2.46 -826.16 -2.03 -27.38 16 4 C 0.26 14.18 5.16 85.63 0.44 14.62 16 5 C -0.54 -31.41 9.39 25.60 0.24 -31.17 16 6 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 7 C 0.01 0.41 5.46 84.66 0.46 0.87 16 8 N -0.93 -56.05 13.29 21.45 0.28 -55.77 16 9 Si 0.97 44.94 29.54 68.60 2.03 46.97 16 10 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 12 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 13 C 0.50 21.64 7.75 87.66 0.68 22.32 16 14 O -0.58 -31.42 16.08 15.76 0.25 -31.17 16 15 C 0.06 1.97 4.50 71.24 0.32 2.29 16 16 O -0.35 -11.66 9.75 -45.12 -0.44 -12.10 16 17 C 0.49 13.67 7.74 71.23 0.55 14.22 16 18 O -0.52 -15.29 16.01 21.97 0.35 -14.94 16 19 C -0.17 -3.55 5.94 -11.52 -0.07 -3.61 16 20 H 0.14 2.87 8.14 -2.38 -0.02 2.85 16 21 C -0.13 -1.94 9.56 30.60 0.29 -1.65 16 22 C -0.07 -1.25 4.66 -11.51 -0.05 -1.30 16 23 H 0.12 2.34 6.45 -2.39 -0.02 2.33 16 24 C -0.07 -1.26 5.61 -19.86 -0.11 -1.37 16 25 C -0.12 -1.81 9.30 22.27 0.21 -1.61 16 26 C -0.13 -1.76 10.05 22.27 0.22 -1.53 16 27 C -0.12 -1.58 10.05 22.27 0.22 -1.35 16 28 C -0.13 -1.83 9.70 22.27 0.22 -1.62 16 29 C -0.09 -1.45 5.88 -19.87 -0.12 -1.57 16 30 C -0.12 -1.71 9.33 71.23 0.66 -1.05 16 31 H 0.06 1.33 7.22 -2.39 -0.02 1.31 16 32 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.08 2.59 8.07 -2.39 -0.02 2.57 16 35 H 0.10 2.30 6.44 -2.39 -0.02 2.29 16 36 H 0.03 1.63 8.07 -2.39 -0.02 1.61 16 37 H 0.00 -0.06 7.42 -2.39 -0.02 -0.08 16 38 H 0.27 15.15 8.31 -92.70 -0.77 14.38 16 39 H 0.12 3.22 7.39 -2.39 -0.02 3.20 16 40 H 0.12 3.20 7.18 -2.39 -0.02 3.18 16 41 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.14 1.49 6.18 -2.39 -0.01 1.48 16 43 H 0.14 1.58 6.02 -2.91 -0.02 1.57 16 44 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 45 H 0.14 1.16 8.06 -2.91 -0.02 1.13 16 46 H 0.14 1.40 8.06 -2.91 -0.02 1.37 16 47 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.08 0.91 8.09 -2.39 -0.02 0.89 16 49 H 0.06 1.02 6.66 -2.39 -0.02 1.01 16 Total: -1.00 -78.20 410.87 6.82 -71.38 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 0.95 Total: 16.47 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: 5.42 Total: 6.53 kcal Atomic # 7 Polarization: -81.41 SS G_CDS: -1.74 Total: -83.15 kcal Atomic # 8 Polarization: -58.37 SS G_CDS: 0.16 Total: -58.21 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -78.20 6.82 -71.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850044545.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.708 kcal (2) G-P(sol) polarization free energy of solvation -78.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds