Wall clock time and date at job start Wed Apr 1 2020 04:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.47194 * 119.78612 * 2 1 4 4 C 1.52997 * 108.66490 * 251.97031 * 3 2 1 5 5 C 1.51777 * 110.87782 * 273.53871 * 4 3 2 6 6 C 1.52095 * 113.95858 * 66.98332 * 5 4 3 7 7 C 1.53061 * 110.57841 * 293.39202 * 6 5 4 8 8 H 1.09000 * 109.62951 * 204.54779 * 7 6 5 9 9 C 1.52994 * 109.63465 * 324.94718 * 7 6 5 10 10 O 1.45201 * 109.47038 * 270.95365 * 9 7 6 11 11 C 1.34229 * 117.00167 * 180.02562 * 10 9 7 12 12 O 1.20829 * 119.99876 * 359.97438 * 11 10 9 13 13 C 1.50695 * 120.00342 * 180.02562 * 11 10 9 14 14 C 1.50697 * 109.47342 * 179.97438 * 13 11 10 15 15 C 1.37640 * 120.12928 * 265.02240 * 14 13 11 16 16 C 1.38615 * 120.24762 * 179.97438 * 15 14 13 17 17 C 1.38653 * 120.50194 * 0.02562 * 16 15 14 18 18 C 1.37594 * 120.24891 * 359.67206 * 17 16 15 19 19 C 1.40706 * 120.12898 * 85.00145 * 14 13 11 20 20 C 1.41389 * 120.24022 * 0.02562 * 19 14 13 21 21 H 1.08003 * 120.00497 * 334.48098 * 20 19 14 22 22 C 1.39944 * 120.00048 * 154.20091 * 20 19 14 23 23 N 1.30831 * 119.99672 * 343.04673 * 22 20 19 24 24 Si 1.86800 * 120.00305 * 163.04544 * 22 20 19 25 25 H 1.48500 * 109.47060 * 94.51630 * 24 22 20 26 26 H 1.48506 * 109.46796 * 214.51605 * 24 22 20 27 27 H 1.48498 * 109.47067 * 334.51367 * 24 22 20 28 28 C 1.33376 * 119.78406 * 179.97438 * 2 1 3 29 29 O 1.21281 * 119.89003 * 359.69728 * 28 2 1 30 30 H 1.08998 * 109.47401 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46756 * 300.02055 * 1 2 3 32 32 H 1.08996 * 109.47409 * 60.02081 * 1 2 3 33 33 H 1.08995 * 109.60232 * 11.72440 * 3 2 1 34 34 H 1.08997 * 109.60587 * 132.21878 * 3 2 1 35 35 H 1.09002 * 109.19438 * 33.90051 * 4 3 2 36 36 H 1.09001 * 109.18958 * 153.22258 * 4 3 2 37 37 H 1.08998 * 108.60945 * 188.12124 * 5 4 3 38 38 H 1.09004 * 108.61287 * 306.02007 * 5 4 3 39 39 H 1.08995 * 109.52375 * 172.97303 * 6 5 4 40 40 H 1.09003 * 109.08228 * 53.52462 * 6 5 4 41 41 H 1.09008 * 109.47040 * 150.95695 * 9 7 6 42 42 H 1.08996 * 109.47576 * 30.95197 * 9 7 6 43 43 H 1.09003 * 109.47163 * 60.00092 * 13 11 10 44 44 H 1.08999 * 109.47403 * 299.99741 * 13 11 10 45 45 H 1.07995 * 119.87622 * 359.95573 * 15 14 13 46 46 H 1.08005 * 119.74639 * 180.02562 * 16 15 14 47 47 H 1.08005 * 119.87603 * 179.97438 * 17 16 15 48 48 H 1.08006 * 120.12631 * 180.31728 * 18 17 16 49 49 H 0.97002 * 120.00038 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1961 1.2775 0.0000 4 6 2.8287 1.4796 -1.3783 5 6 4.1868 0.8061 -1.4542 6 6 4.1281 -0.7121 -1.3844 7 6 3.6416 -1.1689 -0.0069 8 1 4.0012 -2.1785 0.1921 9 6 4.1681 -0.2146 1.0668 10 8 5.4654 -0.6747 1.5292 11 6 6.0684 0.0572 2.4792 12 8 5.5302 1.0496 2.9099 13 6 7.4170 -0.3583 3.0080 14 6 7.8696 0.6242 4.0571 15 6 8.6935 1.6718 3.7130 16 6 9.1109 2.5772 4.6760 17 6 8.7054 2.4392 5.9947 18 6 7.8769 1.4032 6.3602 19 6 7.4515 0.4745 5.3923 20 6 6.6053 -0.5978 5.7574 21 1 5.9552 -1.0476 5.0215 22 6 6.6144 -1.0803 7.0710 23 7 7.6093 -0.7874 7.8686 24 14 5.2061 -2.1425 7.6858 25 1 5.5591 -3.5756 7.5223 26 1 4.9588 -1.8541 9.1214 27 1 3.9809 -1.8419 6.9024 28 6 2.1275 -1.1576 0.0005 29 8 1.5151 -2.2044 0.0065 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5142 0.8899 32 1 -0.3634 0.5135 -0.8901 33 1 1.5053 2.0943 0.2086 34 1 2.9766 1.2521 0.7604 35 1 2.1744 1.0535 -2.1389 36 1 2.9477 2.5469 -1.5650 37 1 4.6650 1.0921 -2.3910 38 1 4.8000 1.1654 -0.6277 39 1 5.1202 -1.1239 -1.5694 40 1 3.4406 -1.0776 -2.1472 41 1 3.4713 -0.1905 1.9047 42 1 4.2662 0.7864 0.6468 43 1 8.1382 -0.3748 2.1909 44 1 7.3440 -1.3527 3.4484 45 1 9.0161 1.7885 2.6890 46 1 9.7570 3.3965 4.3969 47 1 9.0371 3.1503 6.7368 48 1 7.5581 1.3004 7.3870 49 1 7.6155 -1.1215 8.7792 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851562121.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:31 Heat of formation + Delta-G solvation = -102.175038 kcal Electronic energy + Delta-G solvation = -31024.125238 eV Core-core repulsion = 26915.866543 eV Total energy + Delta-G solvation = -4108.258695 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.26285 -41.19452 -39.43662 -38.36379 -37.26628 -35.83670 -35.53192 -33.59501 -32.67915 -31.38072 -30.08606 -29.00013 -27.70630 -26.88637 -25.71392 -24.73798 -23.07043 -22.81015 -21.26777 -20.74845 -20.11171 -19.09929 -18.59249 -18.35275 -17.69641 -17.63558 -17.16862 -16.80061 -16.48844 -16.22952 -15.68619 -15.46482 -15.30447 -15.23151 -14.85804 -14.65814 -14.40124 -14.28093 -14.09113 -13.80867 -13.59638 -13.43909 -13.39540 -13.00445 -12.94696 -12.78882 -12.77538 -12.67790 -12.63485 -12.53354 -12.16042 -11.87867 -11.82947 -11.65750 -11.41468 -11.34040 -11.25798 -11.09905 -11.04557 -10.81336 -9.78818 -9.24668 -9.21388 -8.64462 -6.33595 0.90715 1.08297 1.33493 1.34296 1.36915 1.43806 1.50802 1.80114 2.00837 2.16651 2.75200 3.25759 3.44277 3.58561 3.71062 3.79006 3.90470 3.98895 4.07877 4.21195 4.23933 4.28612 4.34962 4.37770 4.45397 4.54482 4.58863 4.59287 4.69420 4.71310 4.77095 4.79833 4.86736 4.93326 4.98992 5.02787 5.12137 5.16864 5.19918 5.34901 5.38416 5.40260 5.45080 5.52256 5.75058 6.01873 6.13319 6.20323 6.21230 6.39147 6.70646 6.91676 6.95379 6.96183 7.07743 8.32196 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011625 B = 0.003293 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.069483 B = 8500.012916 C = 9962.013451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.605 5.605 3 C 0.071 3.929 4 C -0.132 4.132 5 C -0.137 4.137 6 C -0.102 4.102 7 C -0.101 4.101 8 H 0.109 0.891 9 C 0.048 3.952 10 O -0.358 6.358 11 C 0.467 3.533 12 O -0.527 6.527 13 C -0.043 4.043 14 C -0.200 4.200 15 C -0.082 4.082 16 C -0.240 4.240 17 C -0.112 4.112 18 C -0.193 4.193 19 C 0.099 3.901 20 C -0.488 4.488 21 H 0.067 0.933 22 C 0.042 3.958 23 N -0.820 5.820 24 Si 0.964 3.036 25 H -0.258 1.258 26 H -0.264 1.264 27 H -0.271 1.271 28 C 0.520 3.480 29 O -0.588 6.588 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.113 0.887 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.064 0.936 39 H 0.093 0.907 40 H 0.073 0.927 41 H 0.048 0.952 42 H 0.124 0.876 43 H 0.129 0.871 44 H 0.103 0.897 45 H 0.124 0.876 46 H 0.119 0.881 47 H 0.107 0.893 48 H 0.095 0.905 49 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.096 3.724 -18.241 20.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.336 5.336 3 C -0.050 4.050 4 C -0.170 4.170 5 C -0.174 4.174 6 C -0.140 4.140 7 C -0.122 4.122 8 H 0.127 0.873 9 C -0.024 4.024 10 O -0.275 6.275 11 C 0.311 3.689 12 O -0.415 6.415 13 C -0.080 4.080 14 C -0.201 4.201 15 C -0.100 4.100 16 C -0.259 4.259 17 C -0.131 4.131 18 C -0.212 4.212 19 C 0.097 3.903 20 C -0.517 4.517 21 H 0.085 0.915 22 C -0.173 4.173 23 N -0.446 5.446 24 Si 0.785 3.215 25 H -0.182 1.182 26 H -0.188 1.188 27 H -0.195 1.195 28 C 0.308 3.692 29 O -0.469 6.469 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.132 0.868 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.121 0.879 37 H 0.111 0.889 38 H 0.082 0.918 39 H 0.111 0.889 40 H 0.092 0.908 41 H 0.066 0.934 42 H 0.141 0.859 43 H 0.147 0.853 44 H 0.121 0.879 45 H 0.142 0.858 46 H 0.137 0.863 47 H 0.125 0.875 48 H 0.113 0.887 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.532 3.462 -17.889 20.119 hybrid contribution -0.786 -0.534 1.088 1.444 sum -9.318 2.928 -16.801 19.434 Atomic orbital electron populations 1.21890 0.78158 1.03647 1.03340 1.47847 1.08077 1.06404 1.71275 1.22745 0.97984 0.84732 0.99559 1.21767 0.96330 1.02920 0.96007 1.21423 0.98124 0.93985 1.03864 1.21364 1.03105 0.97063 0.92440 1.21593 0.90574 1.02380 0.97683 0.87282 1.24075 0.82047 1.00135 0.96181 1.86516 1.33964 1.54253 1.52807 1.24361 0.88216 0.80695 0.75585 1.90621 1.65995 1.27696 1.57212 1.20018 0.89691 1.00353 0.97954 1.19445 1.05874 1.00806 0.93986 1.20772 0.96928 0.93772 0.98554 1.20748 1.08677 1.03169 0.93282 1.20981 0.98110 0.97481 0.96481 1.21276 1.03913 0.96531 0.99481 1.17697 0.89795 0.91299 0.91480 1.19619 1.21051 1.15251 0.95797 0.91478 1.26555 0.97472 0.96889 0.96388 1.69866 1.28696 1.38108 1.07974 0.85469 0.78699 0.78989 0.78307 1.18203 1.18839 1.19531 1.20447 0.90143 0.83496 0.75078 1.90684 1.70369 1.33187 1.52654 0.91455 0.90716 0.89412 0.86829 0.89834 0.90723 0.87923 0.88916 0.91764 0.88854 0.90824 0.93408 0.85868 0.85332 0.87910 0.85828 0.86302 0.87535 0.88650 0.90201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.18 10.59 127.77 1.35 2.53 16 2 N -0.60 -12.26 2.85 -846.08 -2.41 -14.67 16 3 C 0.07 1.08 5.84 86.25 0.50 1.58 16 4 C -0.13 -1.49 5.74 30.19 0.17 -1.31 16 5 C -0.14 -1.82 5.19 29.89 0.16 -1.67 16 6 C -0.10 -1.70 5.51 30.32 0.17 -1.53 16 7 C -0.10 -2.39 2.85 -11.29 -0.03 -2.42 16 8 H 0.11 2.83 8.08 -2.39 -0.02 2.81 16 9 C 0.05 1.31 3.05 71.98 0.22 1.53 16 10 O -0.36 -11.43 10.18 -51.40 -0.52 -11.96 16 11 C 0.47 17.83 7.59 71.23 0.54 18.37 16 12 O -0.53 -23.50 15.78 21.95 0.35 -23.15 16 13 C -0.04 -1.63 5.29 29.10 0.15 -1.47 16 14 C -0.20 -9.19 4.43 -19.40 -0.09 -9.28 16 15 C -0.08 -3.45 9.66 22.22 0.21 -3.24 16 16 C -0.24 -10.23 10.05 22.46 0.23 -10.00 16 17 C -0.11 -5.28 10.02 22.22 0.22 -5.06 16 18 C -0.19 -10.33 8.68 22.73 0.20 -10.13 16 19 C 0.10 5.32 5.56 -21.29 -0.12 5.20 16 20 C -0.49 -26.22 8.15 23.46 0.19 -26.03 16 21 H 0.07 3.55 6.67 -2.91 -0.02 3.54 16 22 C 0.04 2.16 5.15 85.26 0.44 2.60 16 23 N -0.82 -43.12 11.01 21.83 0.24 -42.88 16 24 Si 0.96 39.72 29.59 68.60 2.03 41.75 16 25 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 26 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 27 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 28 C 0.52 13.85 6.19 88.10 0.54 14.40 16 29 O -0.59 -20.24 16.35 -3.03 -0.05 -20.29 16 30 H 0.07 1.42 6.85 -2.39 -0.02 1.40 16 31 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.11 1.20 7.96 -2.39 -0.02 1.18 16 34 H 0.08 1.62 3.62 -2.39 -0.01 1.61 16 35 H 0.07 0.83 8.05 -2.39 -0.02 0.81 16 36 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.06 1.03 5.55 -2.38 -0.01 1.02 16 39 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.07 1.18 7.87 -2.39 -0.02 1.16 16 41 H 0.05 1.50 7.57 -2.38 -0.02 1.48 16 42 H 0.12 2.88 2.79 -2.39 -0.01 2.87 16 43 H 0.13 3.76 8.05 -2.39 -0.02 3.74 16 44 H 0.10 4.01 7.05 -2.39 -0.02 3.99 16 45 H 0.12 4.20 8.06 -2.91 -0.02 4.18 16 46 H 0.12 4.25 8.06 -2.91 -0.02 4.23 16 47 H 0.11 4.43 8.06 -2.91 -0.02 4.41 16 48 H 0.10 5.38 6.25 -2.91 -0.02 5.37 16 49 H 0.29 13.70 8.30 -92.71 -0.77 12.93 16 Total: -1.00 -70.83 386.16 5.67 -65.16 By element: Atomic # 1 Polarization: 31.00 SS G_CDS: 0.97 Total: 31.97 kcal Atomic # 6 Polarization: -31.00 SS G_CDS: 5.07 Total: -25.93 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: -2.17 Total: -57.55 kcal Atomic # 8 Polarization: -55.17 SS G_CDS: -0.23 Total: -55.40 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.75 kcal Total: -70.83 5.67 -65.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851562121.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.012 kcal (2) G-P(sol) polarization free energy of solvation -70.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds