Wall clock time and date at job start Wed Apr 1 2020 04:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46495 * 109.46948 * 2 1 4 4 C 1.46506 * 120.00093 * 270.00054 * 3 2 1 5 5 C 1.50699 * 109.47044 * 270.00236 * 4 3 2 6 6 H 1.07997 * 120.00177 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99855 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99917 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 119.99805 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47548 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.46992 * 120.00092 * 9 7 5 12 12 H 1.48509 * 109.47102 * 239.99794 * 9 7 5 13 13 C 1.34781 * 119.99807 * 90.00415 * 3 2 1 14 14 O 1.21285 * 119.99364 * 179.97438 * 13 3 2 15 15 C 1.50695 * 120.00145 * 359.97438 * 13 3 2 16 16 O 1.45194 * 109.47314 * 180.02562 * 15 13 3 17 17 C 1.34223 * 117.00212 * 179.97438 * 16 15 13 18 18 O 1.20825 * 120.00155 * 0.02562 * 17 16 15 19 19 C 1.50709 * 120.00007 * 179.97438 * 17 16 15 20 20 H 1.08994 * 115.54828 * 34.33493 * 19 17 16 21 21 C 1.53077 * 117.49180 * 248.60316 * 19 17 16 22 22 C 1.52997 * 117.49633 * 180.02562 * 19 17 16 23 23 H 1.09006 * 117.50039 * 359.97191 * 22 19 17 24 24 C 1.50706 * 117.49945 * 214.97956 * 22 19 17 25 25 C 1.38260 * 119.99684 * 300.08974 * 24 22 19 26 26 C 1.38214 * 119.99662 * 180.02562 * 25 24 22 27 27 C 1.38256 * 120.00160 * 359.97438 * 26 25 24 28 28 C 1.38211 * 120.00062 * 0.26318 * 27 26 25 29 29 C 1.50693 * 120.00162 * 179.71972 * 28 27 26 30 30 C 1.38212 * 120.00275 * 120.10447 * 24 22 19 31 31 H 1.09007 * 109.46476 * 299.99540 * 1 2 3 32 32 H 1.08991 * 109.47295 * 59.99646 * 1 2 3 33 33 H 1.08996 * 109.46829 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.46775 * 240.00007 * 2 1 3 35 35 H 1.09001 * 109.47387 * 120.00427 * 2 1 3 36 36 H 1.08997 * 109.46639 * 30.00318 * 4 3 2 37 37 H 1.08995 * 109.46667 * 150.00345 * 4 3 2 38 38 H 0.97003 * 119.99867 * 180.02562 * 8 7 5 39 39 H 1.09004 * 109.47300 * 59.99606 * 15 13 3 40 40 H 1.09001 * 109.46827 * 300.00090 * 15 13 3 41 41 H 1.08997 * 117.51171 * 145.03862 * 21 19 17 42 42 H 1.08995 * 117.49995 * 0.02562 * 21 19 17 43 43 H 1.07997 * 119.99889 * 359.97438 * 25 24 22 44 44 H 1.07999 * 119.99762 * 179.97438 * 26 25 24 45 45 H 1.08002 * 119.99676 * 179.97438 * 27 26 25 46 46 H 1.09001 * 109.47236 * 89.99259 * 29 28 27 47 47 H 1.09000 * 109.47285 * 209.99452 * 29 28 27 48 48 H 1.08993 * 109.47149 * 329.99947 * 29 28 27 49 49 H 1.08004 * 119.99477 * 0.02562 * 30 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3426 1.2302 -1.0963 7 6 4.1493 2.3906 -2.8775 8 7 3.3496 3.1275 -3.6171 9 14 5.9133 2.0964 -3.4171 10 1 6.6007 1.2404 -2.4172 11 1 5.9202 1.4184 -4.7382 12 1 6.6215 3.3973 -3.5247 13 6 2.2430 2.0165 1.1673 14 8 2.6477 3.1598 1.1672 15 6 1.9914 1.3063 2.4723 16 8 2.3055 2.1959 3.5759 17 6 2.1336 1.7125 4.8163 18 8 1.7343 0.5832 4.9746 19 6 2.4397 2.5781 6.0115 20 1 2.2277 3.6402 5.8893 21 6 3.6435 2.1913 6.8743 22 6 2.2238 1.9692 7.3984 23 1 1.8600 0.9428 7.4464 24 6 1.7344 2.8840 8.4914 25 6 2.4838 3.9869 8.8569 26 6 2.0352 4.8256 9.8598 27 6 0.8369 4.5620 10.4971 28 6 0.0903 3.4567 10.1351 29 6 -1.2127 3.1658 10.8340 30 6 0.5367 2.6203 9.1288 31 1 -0.3632 0.5138 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 1.8934 -0.5139 -0.8900 35 1 1.8935 -0.5139 0.8899 36 1 1.5817 1.6877 -2.0283 37 1 2.0955 3.1410 -1.1383 38 1 3.6757 3.5180 -4.4430 39 1 2.6213 0.4185 2.5302 40 1 0.9433 1.0125 2.5299 41 1 4.2239 2.9992 7.3199 42 1 4.2139 1.3114 6.5769 43 1 3.4200 4.1926 8.3594 44 1 2.6208 5.6869 10.1456 45 1 0.4867 5.2171 11.2810 46 1 -2.0270 3.6618 10.3058 47 1 -1.3878 2.0900 10.8433 48 1 -1.1659 3.5352 11.8584 49 1 -0.0483 1.7583 8.8436 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860337737.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:36 Heat of formation + Delta-G solvation = -74.707177 kcal Electronic energy + Delta-G solvation = -28906.468362 eV Core-core repulsion = 24799.400763 eV Total energy + Delta-G solvation = -4107.067599 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.89169 -39.90694 -38.98775 -37.37338 -36.10217 -35.30734 -32.88337 -32.84605 -31.23412 -30.19504 -29.30345 -27.28572 -26.75393 -25.04875 -23.90035 -23.08981 -22.59326 -22.37878 -20.75369 -19.86118 -18.66989 -18.14292 -17.09273 -16.81465 -16.64325 -16.35433 -16.08268 -15.58639 -15.30376 -15.22944 -14.63397 -14.33120 -14.26202 -14.12594 -13.65380 -13.48277 -13.41715 -13.12349 -12.87955 -12.67214 -12.57755 -12.39483 -12.24860 -12.11382 -12.07146 -11.65904 -11.63747 -11.30017 -11.25369 -11.05353 -10.94951 -10.87785 -10.84499 -10.63974 -10.57352 -10.52296 -10.15943 -9.65558 -9.08013 -9.01308 -8.85419 -8.46249 -7.76495 -6.07057 -4.11850 0.92947 1.06402 1.98691 2.37608 3.22767 3.24475 3.28706 3.36607 3.40922 3.67227 3.82400 4.18163 4.33261 4.42035 4.43967 4.52923 4.58593 4.75719 4.78285 4.85468 4.87648 4.99741 5.08738 5.14346 5.19946 5.24204 5.27716 5.30285 5.35060 5.38378 5.47153 5.57403 5.59639 5.65198 5.71920 5.73333 5.81143 5.98391 6.14877 6.17827 6.25049 6.29161 6.33865 6.43613 6.67564 6.98450 7.38591 7.46060 7.67905 7.89213 8.19180 8.28368 8.83466 8.98279 9.53240 11.01135 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017803 B = 0.001873 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.370529 B =14942.042969 C =15677.791581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 N -0.592 5.592 4 C 0.247 3.753 5 C -0.528 4.528 6 H 0.059 0.941 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.507 3.493 14 O -0.518 6.518 15 C 0.049 3.951 16 O -0.323 6.323 17 C 0.492 3.508 18 O -0.512 6.512 19 C -0.152 4.152 20 H 0.140 0.860 21 C -0.139 4.139 22 C -0.082 4.082 23 H 0.129 0.871 24 C -0.051 4.051 25 C -0.123 4.123 26 C -0.113 4.113 27 C -0.123 4.123 28 C -0.085 4.085 29 C -0.115 4.115 30 C -0.108 4.108 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.064 0.936 36 H 0.036 0.964 37 H 0.045 0.955 38 H 0.263 0.737 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.115 0.885 42 H 0.109 0.891 43 H 0.126 0.874 44 H 0.123 0.877 45 H 0.121 0.879 46 H 0.071 0.929 47 H 0.067 0.933 48 H 0.066 0.934 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.746 -3.010 27.410 28.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.326 5.326 4 C 0.129 3.871 5 C -0.567 4.567 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.208 1.208 13 C 0.291 3.709 14 O -0.394 6.394 15 C -0.028 4.028 16 O -0.237 6.237 17 C 0.336 3.664 18 O -0.401 6.401 19 C -0.171 4.171 20 H 0.158 0.842 21 C -0.175 4.175 22 C -0.100 4.100 23 H 0.147 0.853 24 C -0.051 4.051 25 C -0.141 4.141 26 C -0.131 4.131 27 C -0.141 4.141 28 C -0.085 4.085 29 C -0.172 4.172 30 C -0.126 4.126 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.082 0.918 36 H 0.054 0.946 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.133 0.867 42 H 0.127 0.873 43 H 0.144 0.856 44 H 0.141 0.859 45 H 0.139 0.861 46 H 0.090 0.910 47 H 0.086 0.914 48 H 0.085 0.915 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.656 -2.623 27.214 28.139 hybrid contribution 0.863 -0.310 -0.611 1.102 sum -5.793 -2.934 26.603 27.384 Atomic orbital electron populations 1.22235 0.96531 1.01694 1.02421 1.21511 0.93758 0.83957 1.03022 1.48211 1.63828 1.13398 1.07123 1.19339 0.96499 0.93723 0.77556 1.21467 0.96854 1.31991 1.06360 0.92325 1.24939 0.97941 0.94867 0.96372 1.69940 1.35633 1.33348 1.14346 0.86426 0.84522 0.78083 0.78292 1.19794 1.20951 1.20842 1.19703 0.79750 0.87157 0.84285 1.90720 1.44446 1.17502 1.86727 1.22993 1.02725 0.92645 0.84420 1.86552 1.78153 1.44881 1.14127 1.22551 0.73912 0.85905 0.84072 1.90647 1.42772 1.19932 1.86746 1.21845 1.07162 1.00728 0.87371 0.84237 1.23245 0.90249 1.04277 0.99756 1.21189 0.99196 0.99808 0.89766 0.85284 1.19047 0.94912 0.95159 0.95963 1.21091 1.00187 0.94720 0.98081 1.21120 0.96350 0.99344 0.96260 1.21061 0.95213 0.97291 1.00563 1.19915 0.96899 0.95158 0.96555 1.20802 0.94151 1.02339 0.99903 1.20881 0.95645 1.00009 0.96090 0.93150 0.91764 0.91890 0.89396 0.91773 0.94607 0.93692 0.92722 0.88645 0.88717 0.86653 0.87270 0.85648 0.85865 0.86121 0.91047 0.91437 0.91536 0.85822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 10.24 37.16 0.38 -1.89 16 2 C 0.10 1.61 5.93 -4.04 -0.02 1.58 16 3 N -0.59 -12.46 2.46 -175.05 -0.43 -12.89 16 4 C 0.25 6.41 5.16 -5.19 -0.03 6.38 16 5 C -0.53 -14.89 9.39 -34.44 -0.32 -15.21 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16 9 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 C 0.51 10.82 7.75 -10.99 -0.09 10.74 16 14 O -0.52 -13.48 16.08 -14.11 -0.23 -13.71 16 15 C 0.05 0.82 4.50 36.00 0.16 0.98 16 16 O -0.32 -5.50 9.75 -45.88 -0.45 -5.95 16 17 C 0.49 7.06 7.74 36.01 0.28 7.34 16 18 O -0.51 -7.93 16.01 -18.75 -0.30 -8.23 16 19 C -0.15 -1.65 5.94 -91.73 -0.54 -2.20 16 20 H 0.14 1.43 8.14 -51.93 -0.42 1.00 16 21 C -0.14 -1.18 9.56 -26.71 -0.26 -1.44 16 22 C -0.08 -0.76 5.55 -91.79 -0.51 -1.27 16 23 H 0.13 1.25 7.67 -51.93 -0.40 0.85 16 24 C -0.05 -0.46 5.61 -104.62 -0.59 -1.04 16 25 C -0.12 -1.00 9.30 -39.58 -0.37 -1.37 16 26 C -0.11 -0.85 10.05 -39.58 -0.40 -1.25 16 27 C -0.12 -0.92 9.70 -39.58 -0.38 -1.31 16 28 C -0.09 -0.67 5.88 -104.63 -0.62 -1.29 16 29 C -0.12 -0.65 10.01 36.00 0.36 -0.29 16 30 C -0.11 -0.94 9.39 -39.58 -0.37 -1.31 16 31 H 0.05 0.65 7.22 -51.93 -0.37 0.27 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 1.42 8.07 -51.93 -0.42 1.00 16 35 H 0.06 0.85 6.44 -51.93 -0.33 0.52 16 36 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 37 H 0.05 1.32 7.42 -51.93 -0.39 0.93 16 38 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.10 1.42 7.39 -51.93 -0.38 1.03 16 40 H 0.09 1.37 7.18 -51.93 -0.37 0.99 16 41 H 0.12 0.76 6.18 -51.93 -0.32 0.44 16 42 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.13 0.84 6.03 -52.49 -0.32 0.52 16 44 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 45 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 46 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 47 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 48 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 49 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 LS Contribution 414.45 15.07 6.25 6.25 Total: -1.00 -34.82 414.45 -10.34 -45.17 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -7.49 Total: -0.54 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -3.41 Total: -1.21 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.31 Total: -38.57 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -0.97 Total: -27.89 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -34.82 -10.34 -45.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860337737.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.540 kcal (2) G-P(sol) polarization free energy of solvation -34.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds