Wall clock time and date at job start Wed Apr 1 2020 04:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46495 * 109.46948 * 2 1 4 4 C 1.46506 * 120.00093 * 270.00054 * 3 2 1 5 5 C 1.50699 * 109.47044 * 270.00236 * 4 3 2 6 6 H 1.07997 * 120.00177 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99855 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99917 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 119.99805 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47548 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.46992 * 120.00092 * 9 7 5 12 12 H 1.48509 * 109.47102 * 239.99794 * 9 7 5 13 13 C 1.34781 * 119.99807 * 90.00415 * 3 2 1 14 14 O 1.21285 * 119.99364 * 179.97438 * 13 3 2 15 15 C 1.50695 * 120.00145 * 359.97438 * 13 3 2 16 16 O 1.45194 * 109.47314 * 180.02562 * 15 13 3 17 17 C 1.34223 * 117.00212 * 179.97438 * 16 15 13 18 18 O 1.20825 * 120.00155 * 0.02562 * 17 16 15 19 19 C 1.50709 * 120.00007 * 179.97438 * 17 16 15 20 20 H 1.08994 * 115.54828 * 34.33493 * 19 17 16 21 21 C 1.53077 * 117.49180 * 248.60316 * 19 17 16 22 22 C 1.52997 * 117.49633 * 180.02562 * 19 17 16 23 23 H 1.09006 * 117.50039 * 359.97191 * 22 19 17 24 24 C 1.50706 * 117.49945 * 214.97956 * 22 19 17 25 25 C 1.38260 * 119.99684 * 300.08974 * 24 22 19 26 26 C 1.38214 * 119.99662 * 180.02562 * 25 24 22 27 27 C 1.38256 * 120.00160 * 359.97438 * 26 25 24 28 28 C 1.38211 * 120.00062 * 0.26318 * 27 26 25 29 29 C 1.50693 * 120.00162 * 179.71972 * 28 27 26 30 30 C 1.38212 * 120.00275 * 120.10447 * 24 22 19 31 31 H 1.09007 * 109.46476 * 299.99540 * 1 2 3 32 32 H 1.08991 * 109.47295 * 59.99646 * 1 2 3 33 33 H 1.08996 * 109.46829 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.46775 * 240.00007 * 2 1 3 35 35 H 1.09001 * 109.47387 * 120.00427 * 2 1 3 36 36 H 1.08997 * 109.46639 * 30.00318 * 4 3 2 37 37 H 1.08995 * 109.46667 * 150.00345 * 4 3 2 38 38 H 0.97003 * 119.99867 * 180.02562 * 8 7 5 39 39 H 1.09004 * 109.47300 * 59.99606 * 15 13 3 40 40 H 1.09001 * 109.46827 * 300.00090 * 15 13 3 41 41 H 1.08997 * 117.51171 * 145.03862 * 21 19 17 42 42 H 1.08995 * 117.49995 * 0.02562 * 21 19 17 43 43 H 1.07997 * 119.99889 * 359.97438 * 25 24 22 44 44 H 1.07999 * 119.99762 * 179.97438 * 26 25 24 45 45 H 1.08002 * 119.99676 * 179.97438 * 27 26 25 46 46 H 1.09001 * 109.47236 * 89.99259 * 29 28 27 47 47 H 1.09000 * 109.47285 * 209.99452 * 29 28 27 48 48 H 1.08993 * 109.47149 * 329.99947 * 29 28 27 49 49 H 1.08004 * 119.99477 * 0.02562 * 30 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3426 1.2302 -1.0963 7 6 4.1493 2.3906 -2.8775 8 7 3.3496 3.1275 -3.6171 9 14 5.9133 2.0964 -3.4171 10 1 6.6007 1.2404 -2.4172 11 1 5.9202 1.4184 -4.7382 12 1 6.6215 3.3973 -3.5247 13 6 2.2430 2.0165 1.1673 14 8 2.6477 3.1598 1.1672 15 6 1.9914 1.3063 2.4723 16 8 2.3055 2.1959 3.5759 17 6 2.1336 1.7125 4.8163 18 8 1.7343 0.5832 4.9746 19 6 2.4397 2.5781 6.0115 20 1 2.2277 3.6402 5.8893 21 6 3.6435 2.1913 6.8743 22 6 2.2238 1.9692 7.3984 23 1 1.8600 0.9428 7.4464 24 6 1.7344 2.8840 8.4914 25 6 2.4838 3.9869 8.8569 26 6 2.0352 4.8256 9.8598 27 6 0.8369 4.5620 10.4971 28 6 0.0903 3.4567 10.1351 29 6 -1.2127 3.1658 10.8340 30 6 0.5367 2.6203 9.1288 31 1 -0.3632 0.5138 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 1.8934 -0.5139 -0.8900 35 1 1.8935 -0.5139 0.8899 36 1 1.5817 1.6877 -2.0283 37 1 2.0955 3.1410 -1.1383 38 1 3.6757 3.5180 -4.4430 39 1 2.6213 0.4185 2.5302 40 1 0.9433 1.0125 2.5299 41 1 4.2239 2.9992 7.3199 42 1 4.2139 1.3114 6.5769 43 1 3.4200 4.1926 8.3594 44 1 2.6208 5.6869 10.1456 45 1 0.4867 5.2171 11.2810 46 1 -2.0270 3.6618 10.3058 47 1 -1.3878 2.0900 10.8433 48 1 -1.1659 3.5352 11.8584 49 1 -0.0483 1.7583 8.8436 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860337737.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:35 Heat of formation + Delta-G solvation = -91.975122 kcal Electronic energy + Delta-G solvation = -28907.217156 eV Core-core repulsion = 24799.400763 eV Total energy + Delta-G solvation = -4107.816393 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.99118 -40.85586 -40.35601 -38.30609 -37.24527 -36.95276 -34.95089 -33.41190 -31.89204 -31.73662 -30.75280 -28.59409 -27.75602 -26.15859 -24.81287 -24.54203 -24.08053 -23.01405 -21.73733 -20.59589 -20.24250 -19.21035 -18.66620 -18.09715 -17.94972 -17.67959 -17.39575 -17.00517 -16.31309 -16.18443 -15.98310 -15.79158 -15.05254 -14.91342 -14.72240 -14.64428 -14.55243 -14.22528 -13.99601 -13.94569 -13.62684 -13.47222 -13.30386 -13.20038 -13.07387 -13.00521 -12.87131 -12.70436 -12.52744 -12.27476 -12.24678 -12.08335 -11.91208 -11.82442 -11.78596 -11.70550 -11.63246 -11.48366 -10.76091 -10.66168 -9.66800 -9.56578 -9.45398 -8.24404 -6.38884 0.30750 0.48394 0.92676 1.20112 1.36257 1.38774 1.50309 1.59252 2.28643 2.41986 2.55635 2.99930 3.05710 3.38802 3.43470 3.52292 3.65754 3.81217 3.93214 3.93469 4.00723 4.06994 4.13171 4.16626 4.24593 4.36120 4.51110 4.52700 4.57008 4.67986 4.79858 4.83557 4.86654 4.88782 4.92715 4.99923 5.00842 5.01334 5.16125 5.16507 5.22225 5.31953 5.34346 5.52954 5.58407 5.66750 5.71027 5.78153 6.02826 6.12089 6.49096 6.62189 6.70441 7.19214 7.35006 8.83283 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017803 B = 0.001873 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.370529 B =14942.042969 C =15677.791581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.594 5.594 4 C 0.262 3.738 5 C -0.545 4.545 6 H 0.055 0.945 7 C 0.008 3.992 8 N -0.927 5.927 9 Si 0.969 3.031 10 H -0.267 1.267 11 H -0.268 1.268 12 H -0.282 1.282 13 C 0.499 3.501 14 O -0.578 6.578 15 C 0.061 3.939 16 O -0.346 6.346 17 C 0.493 3.507 18 O -0.525 6.525 19 C -0.169 4.169 20 H 0.143 0.857 21 C -0.124 4.124 22 C -0.071 4.071 23 H 0.123 0.877 24 C -0.065 4.065 25 C -0.132 4.132 26 C -0.120 4.120 27 C -0.130 4.130 28 C -0.095 4.095 29 C -0.115 4.115 30 C -0.125 4.125 31 H 0.056 0.944 32 H 0.044 0.956 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.030 0.970 37 H -0.001 1.001 38 H 0.268 0.732 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.138 0.862 42 H 0.112 0.888 43 H 0.139 0.861 44 H 0.143 0.857 45 H 0.139 0.861 46 H 0.074 0.926 47 H 0.070 0.930 48 H 0.078 0.922 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.205 -4.293 29.310 30.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.327 5.327 4 C 0.141 3.859 5 C -0.583 4.583 6 H 0.073 0.927 7 C -0.192 4.192 8 N -0.567 5.567 9 Si 0.793 3.207 10 H -0.191 1.191 11 H -0.194 1.194 12 H -0.208 1.208 13 C 0.286 3.714 14 O -0.458 6.458 15 C -0.015 4.015 16 O -0.261 6.261 17 C 0.338 3.662 18 O -0.415 6.415 19 C -0.188 4.188 20 H 0.161 0.839 21 C -0.160 4.160 22 C -0.089 4.089 23 H 0.141 0.859 24 C -0.065 4.065 25 C -0.149 4.149 26 C -0.137 4.137 27 C -0.148 4.148 28 C -0.095 4.095 29 C -0.171 4.171 30 C -0.143 4.143 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.117 0.883 34 H 0.101 0.899 35 H 0.116 0.884 36 H 0.048 0.952 37 H 0.017 0.983 38 H 0.077 0.923 39 H 0.136 0.864 40 H 0.139 0.861 41 H 0.156 0.844 42 H 0.130 0.870 43 H 0.157 0.843 44 H 0.160 0.840 45 H 0.157 0.843 46 H 0.093 0.907 47 H 0.089 0.911 48 H 0.097 0.903 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.145 -3.964 29.131 30.035 hybrid contribution 0.630 0.097 -1.145 1.310 sum -5.515 -3.868 27.987 28.786 Atomic orbital electron populations 1.22178 0.94341 1.03805 1.01813 1.21873 0.95549 0.80964 1.04437 1.48209 1.63548 1.15260 1.05657 1.18804 0.95661 0.91660 0.79738 1.21733 0.97792 1.32145 1.06653 0.92697 1.25862 1.02457 0.94423 0.96413 1.70054 1.37713 1.34066 1.14828 0.85348 0.78911 0.78011 0.78410 1.19107 1.19356 1.20786 1.20540 0.78365 0.86647 0.85847 1.90681 1.47136 1.20189 1.87753 1.22846 1.04689 0.92057 0.81919 1.86561 1.78738 1.45692 1.15145 1.23131 0.73177 0.86161 0.83718 1.90628 1.43515 1.20637 1.86702 1.21935 1.09765 1.00427 0.86655 0.83887 1.23430 0.89851 1.04910 0.97809 1.21139 0.99731 0.99383 0.88664 0.85926 1.19112 0.95417 0.95707 0.96218 1.21309 1.00705 0.94527 0.98393 1.21428 0.96603 0.99790 0.95917 1.21379 0.95176 0.97363 1.00890 1.20212 0.97770 0.95140 0.96419 1.20837 0.93153 1.02732 1.00385 1.21062 0.95914 1.00569 0.96733 0.92524 0.93651 0.88337 0.89900 0.88422 0.95182 0.98258 0.92347 0.86358 0.86122 0.84421 0.86994 0.84348 0.83963 0.84288 0.90744 0.91077 0.90315 0.85646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.04 10.24 71.98 0.74 -3.30 16 2 C 0.09 2.83 5.93 86.38 0.51 3.34 16 3 N -0.59 -25.38 2.46 -826.14 -2.03 -27.41 16 4 C 0.26 14.17 5.16 85.63 0.44 14.61 16 5 C -0.54 -31.45 9.39 25.60 0.24 -31.21 16 6 H 0.05 3.13 7.81 -2.91 -0.02 3.11 16 7 C 0.01 0.44 5.46 84.66 0.46 0.90 16 8 N -0.93 -56.05 13.29 21.45 0.28 -55.76 16 9 Si 0.97 44.98 29.54 68.60 2.03 47.00 16 10 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 11 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 12 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 13 C 0.50 21.67 7.75 87.65 0.68 22.35 16 14 O -0.58 -31.42 16.08 15.75 0.25 -31.16 16 15 C 0.06 1.97 4.50 71.23 0.32 2.29 16 16 O -0.35 -11.68 9.75 -44.99 -0.44 -12.12 16 17 C 0.49 13.75 7.74 71.24 0.55 14.31 16 18 O -0.53 -15.58 16.01 21.97 0.35 -15.23 16 19 C -0.17 -3.53 5.94 -11.51 -0.07 -3.60 16 20 H 0.14 2.86 8.14 -2.39 -0.02 2.84 16 21 C -0.12 -1.90 9.56 30.61 0.29 -1.60 16 22 C -0.07 -1.25 5.55 -11.55 -0.06 -1.31 16 23 H 0.12 2.30 7.67 -2.38 -0.02 2.28 16 24 C -0.06 -1.10 5.61 -19.86 -0.11 -1.21 16 25 C -0.13 -1.95 9.30 22.27 0.21 -1.74 16 26 C -0.12 -1.59 10.05 22.27 0.22 -1.37 16 27 C -0.13 -1.73 9.70 22.27 0.22 -1.52 16 28 C -0.10 -1.39 5.88 -19.87 -0.12 -1.51 16 29 C -0.11 -1.14 10.01 71.23 0.71 -0.42 16 30 C -0.12 -2.09 9.39 22.27 0.21 -1.88 16 31 H 0.06 1.33 7.22 -2.38 -0.02 1.31 16 32 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.08 2.60 8.07 -2.38 -0.02 2.58 16 35 H 0.10 2.31 6.44 -2.39 -0.02 2.30 16 36 H 0.03 1.63 8.07 -2.39 -0.02 1.61 16 37 H 0.00 -0.04 7.42 -2.39 -0.02 -0.06 16 38 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 39 H 0.12 3.24 7.39 -2.39 -0.02 3.22 16 40 H 0.12 3.22 7.18 -2.39 -0.02 3.20 16 41 H 0.14 1.47 6.18 -2.39 -0.01 1.46 16 42 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.14 1.56 6.03 -2.91 -0.02 1.54 16 44 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 45 H 0.14 1.25 8.06 -2.91 -0.02 1.22 16 46 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.07 0.64 8.09 -2.39 -0.02 0.62 16 48 H 0.08 0.58 8.08 -2.39 -0.02 0.56 16 49 H 0.13 1.92 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -78.43 414.45 6.84 -71.59 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 0.95 Total: 15.98 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: 5.45 Total: 7.11 kcal Atomic # 7 Polarization: -81.43 SS G_CDS: -1.74 Total: -83.18 kcal Atomic # 8 Polarization: -58.68 SS G_CDS: 0.17 Total: -58.51 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -78.43 6.84 -71.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860337737.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.388 kcal (2) G-P(sol) polarization free energy of solvation -78.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds