Wall clock time and date at job start Wed Apr 1 2020 04:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45206 * 109.47258 * 2 1 4 4 C 1.34225 * 117.00267 * 179.97438 * 3 2 1 5 5 O 1.20829 * 119.99801 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99813 * 179.97438 * 4 3 2 7 7 H 1.09002 * 110.42875 * 59.30560 * 6 4 3 8 8 C 1.54264 * 110.48570 * 296.75938 * 6 4 3 9 9 C 1.53875 * 106.59636 * 217.57861 * 8 6 4 10 10 C 1.54270 * 106.59978 * 359.97438 * 9 8 6 11 11 H 1.08997 * 110.49021 * 264.93363 * 10 9 8 12 12 C 1.50703 * 110.48719 * 142.28773 * 10 9 8 13 13 O 1.21282 * 119.99759 * 241.45843 * 12 10 9 14 14 N 1.34773 * 119.99740 * 61.45405 * 12 10 9 15 15 C 1.46502 * 120.00036 * 180.02562 * 14 12 10 16 16 C 1.50696 * 109.47378 * 179.97438 * 15 14 12 17 17 C 1.38630 * 119.75178 * 269.72231 * 16 15 14 18 18 C 1.37623 * 120.24925 * 179.76062 * 17 16 15 19 19 C 1.40714 * 119.74008 * 0.53355 * 18 17 16 20 20 C 1.41397 * 120.24120 * 179.73877 * 19 18 17 21 21 H 1.08004 * 119.99639 * 24.38298 * 20 19 18 22 22 C 1.39947 * 120.00473 * 204.37690 * 20 19 18 23 23 N 1.30825 * 119.99683 * 17.86897 * 22 20 19 24 24 Si 1.86794 * 120.00373 * 197.86702 * 22 20 19 25 25 H 1.48503 * 109.47309 * 90.00147 * 24 22 20 26 26 H 1.48497 * 109.47255 * 210.00262 * 24 22 20 27 27 H 1.48499 * 109.47249 * 329.99899 * 24 22 20 28 28 C 1.40714 * 119.51782 * 359.72637 * 19 18 17 29 29 C 1.37618 * 119.73934 * 359.97438 * 28 19 18 30 30 C 1.54889 * 110.48252 * 181.84181 * 6 4 3 31 31 H 1.09002 * 109.46732 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46822 * 299.99853 * 1 2 3 33 33 H 1.08994 * 109.47170 * 60.00469 * 1 2 3 34 34 H 1.09001 * 109.47282 * 239.99893 * 2 1 3 35 35 H 1.09001 * 109.47524 * 119.99591 * 2 1 3 36 36 H 1.08996 * 110.03639 * 336.85974 * 8 6 4 37 37 H 1.08997 * 110.03030 * 98.25256 * 8 6 4 38 38 H 1.08996 * 110.03334 * 119.28266 * 9 8 6 39 39 H 1.08998 * 110.03630 * 240.71882 * 9 8 6 40 40 H 0.96998 * 120.00520 * 359.97438 * 14 12 10 41 41 H 1.09006 * 109.47232 * 300.00358 * 15 14 12 42 42 H 1.09004 * 109.47295 * 59.99830 * 15 14 12 43 43 H 1.07995 * 119.87504 * 0.02562 * 17 16 15 44 44 H 1.07997 * 120.12672 * 180.23338 * 18 17 16 45 45 H 0.96995 * 119.99844 * 179.97438 * 23 22 20 46 46 H 1.07995 * 120.12958 * 179.97438 * 28 19 18 47 47 H 1.08007 * 119.87448 * 179.97438 * 29 28 19 48 48 H 1.09009 * 110.75590 * 275.06869 * 30 6 4 49 49 H 1.08998 * 110.75871 * 38.43842 * 30 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 0.0000 7 1 3.5838 3.4889 0.8779 8 6 3.5263 3.6843 -1.2910 9 6 4.7446 4.5315 -1.6982 10 6 5.8365 4.2704 -0.6401 11 1 5.8088 5.0373 0.1340 12 6 7.1968 4.2210 -1.2870 13 8 7.8603 3.2075 -1.2269 14 7 7.6758 5.3029 -1.9323 15 6 8.9978 5.2547 -2.5616 16 6 9.2937 6.5820 -3.2111 17 6 8.9329 6.7971 -4.5322 18 6 9.1938 8.0069 -5.1340 19 6 9.8394 9.0237 -4.4063 20 6 10.1176 10.2688 -5.0158 21 1 9.5263 10.6030 -5.8555 22 6 11.1589 11.0682 -4.5310 23 7 12.0853 10.5448 -3.7698 24 14 11.2262 12.8824 -4.9706 25 1 10.4827 13.6666 -3.9519 26 1 12.6413 13.3313 -5.0049 27 1 10.6082 13.0918 -6.3045 28 6 10.2060 8.7923 -3.0676 29 6 9.9296 7.5768 -2.4844 30 6 5.4679 2.8841 -0.0459 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5137 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 3.2890 2.9691 -2.0784 37 1 2.6685 4.3296 -1.1018 38 1 5.0985 4.2273 -2.6833 39 1 4.4785 5.5885 -1.7065 40 1 7.1449 6.1133 -1.9807 41 1 9.7532 5.0438 -1.8045 42 1 9.0120 4.4695 -3.3176 43 1 8.4414 6.0137 -5.0899 44 1 8.9085 8.1736 -6.1621 45 1 12.8073 11.0988 -3.4340 46 1 10.7023 9.5655 -2.5001 47 1 10.2103 7.3967 -1.4571 48 1 5.8804 2.7690 0.9566 49 1 5.8076 2.0804 -0.6991 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869061923.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:57 Heat of formation + Delta-G solvation = -149.596642 kcal Electronic energy + Delta-G solvation = -28763.575016 eV Core-core repulsion = 24653.259966 eV Total energy + Delta-G solvation = -4110.315050 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.83907 -40.91300 -39.50988 -38.36122 -37.43796 -36.29952 -35.06513 -32.80662 -32.22053 -31.19927 -30.77576 -29.83167 -28.45029 -25.71871 -24.74022 -23.25969 -22.89908 -22.66189 -21.81262 -21.05036 -20.75497 -19.23273 -19.00268 -18.17502 -17.78789 -17.25144 -17.12826 -16.79897 -16.76966 -15.97061 -15.85228 -15.52167 -15.21771 -14.99684 -14.91882 -14.44050 -14.32455 -14.22130 -13.82978 -13.74774 -13.56582 -13.32565 -13.18564 -13.01887 -12.90041 -12.88430 -12.75723 -12.51943 -12.38361 -12.23370 -12.21735 -12.10127 -11.92724 -11.67523 -11.53969 -11.48444 -11.32274 -11.27804 -11.05237 -10.77654 -10.00321 -9.39057 -9.27713 -8.66398 -6.36412 0.85107 1.12263 1.14107 1.39713 1.48936 1.52622 1.62972 1.68937 2.20467 2.38498 2.78185 3.27897 3.40276 3.67802 3.76467 3.98504 4.05260 4.07805 4.10976 4.23026 4.29440 4.31665 4.32536 4.33902 4.44949 4.47667 4.52947 4.62526 4.66021 4.82817 4.85484 4.90232 4.92482 5.05180 5.08326 5.14724 5.15330 5.20083 5.25586 5.30698 5.35826 5.43458 5.45640 5.53298 5.69000 5.91860 6.09194 6.20824 6.36625 6.67991 6.68516 6.69649 6.92420 7.01203 7.32143 8.30201 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.027304 B = 0.001630 C = 0.001589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.244173 B =17175.096755 C =17622.084166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.051 3.949 3 O -0.355 6.355 4 C 0.468 3.532 5 O -0.544 6.544 6 C -0.081 4.081 7 H 0.150 0.850 8 C -0.101 4.101 9 C -0.112 4.112 10 C -0.106 4.106 11 H 0.138 0.862 12 C 0.511 3.489 13 O -0.594 6.594 14 N -0.709 5.709 15 C 0.192 3.808 16 C -0.226 4.226 17 C -0.068 4.068 18 C -0.242 4.242 19 C 0.086 3.914 20 C -0.496 4.496 21 H 0.077 0.923 22 C 0.036 3.964 23 N -0.822 5.822 24 Si 0.982 3.018 25 H -0.261 1.261 26 H -0.270 1.270 27 H -0.258 1.258 28 C -0.190 4.190 29 C -0.082 4.082 30 C -0.089 4.089 31 H 0.097 0.903 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.112 0.888 38 H 0.058 0.942 39 H 0.108 0.892 40 H 0.412 0.588 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.114 0.886 44 H 0.098 0.902 45 H 0.289 0.711 46 H 0.101 0.899 47 H 0.104 0.896 48 H 0.078 0.922 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.845 -10.171 8.766 25.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 O -0.272 6.272 4 C 0.312 3.688 5 O -0.434 6.434 6 C -0.100 4.100 7 H 0.167 0.833 8 C -0.139 4.139 9 C -0.150 4.150 10 C -0.127 4.127 11 H 0.156 0.844 12 C 0.299 3.701 13 O -0.475 6.475 14 N -0.360 5.360 15 C 0.069 3.931 16 C -0.228 4.228 17 C -0.086 4.086 18 C -0.261 4.261 19 C 0.083 3.917 20 C -0.525 4.525 21 H 0.095 0.905 22 C -0.179 4.179 23 N -0.447 5.447 24 Si 0.803 3.197 25 H -0.185 1.185 26 H -0.195 1.195 27 H -0.182 1.182 28 C -0.210 4.210 29 C -0.101 4.101 30 C -0.127 4.127 31 H 0.115 0.885 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.131 0.869 38 H 0.076 0.924 39 H 0.126 0.874 40 H 0.248 0.752 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.132 0.868 44 H 0.116 0.884 45 H 0.100 0.900 46 H 0.119 0.881 47 H 0.122 0.878 48 H 0.097 0.903 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -20.956 -11.156 8.901 25.354 hybrid contribution 0.716 0.599 -0.367 1.003 sum -20.240 -10.556 8.534 24.370 Atomic orbital electron populations 1.21812 0.90186 1.04304 1.03897 1.23279 0.97244 0.79490 1.02268 1.86517 1.23800 1.33356 1.83520 1.24150 0.80623 0.93093 0.70916 1.90686 1.61333 1.44550 1.46817 1.22059 0.95053 0.88907 1.03999 0.83283 1.22072 0.99201 0.98523 0.94104 1.22170 0.92970 1.02673 0.97156 1.22286 0.90385 1.00139 0.99890 0.84433 1.21184 0.88756 0.82335 0.77847 1.90680 1.61660 1.33155 1.61979 1.46289 1.19204 1.15828 1.54634 1.19691 0.84094 0.94042 0.95266 1.19182 1.11914 0.96237 0.95473 1.20662 0.97915 0.95925 0.94145 1.21143 1.11170 0.94747 0.99087 1.18009 0.89229 0.92648 0.91802 1.19906 1.14580 1.02755 1.15287 0.90456 1.26766 0.93220 1.04958 0.92982 1.69874 1.08894 1.39110 1.26834 0.85203 0.78478 0.76128 0.79937 1.18532 1.19461 1.18178 1.21258 1.06664 0.97623 0.95425 1.20745 0.97743 0.93362 0.98238 1.22290 0.92412 0.96027 1.01975 0.88487 0.90948 0.91165 0.91902 0.91507 0.92154 0.86936 0.92360 0.87351 0.75209 0.92980 0.92685 0.86775 0.88379 0.90040 0.88131 0.87803 0.90315 0.92499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.29 71.98 0.74 -0.38 16 2 C 0.05 0.72 6.19 71.98 0.45 1.17 16 3 O -0.36 -6.13 10.21 -51.36 -0.52 -6.65 16 4 C 0.47 9.66 7.11 71.24 0.51 10.16 16 5 O -0.54 -15.62 15.49 21.96 0.34 -15.28 16 6 C -0.08 -1.21 3.35 -10.46 -0.04 -1.24 16 7 H 0.15 1.25 8.14 -2.39 -0.02 1.23 16 8 C -0.10 -1.23 6.36 31.32 0.20 -1.03 16 9 C -0.11 -1.58 6.30 31.32 0.20 -1.38 16 10 C -0.11 -1.95 3.26 -10.33 -0.03 -1.98 16 11 H 0.14 1.71 8.14 -2.39 -0.02 1.69 16 12 C 0.51 14.53 7.02 87.66 0.62 15.14 16 13 O -0.59 -22.57 15.76 -3.04 -0.05 -22.62 16 14 N -0.71 -19.88 5.49 -466.78 -2.56 -22.44 16 15 C 0.19 6.59 5.79 85.63 0.50 7.09 16 16 C -0.23 -8.91 5.27 -19.68 -0.10 -9.02 16 17 C -0.07 -2.76 9.67 22.22 0.21 -2.54 16 18 C -0.24 -11.24 9.80 22.73 0.22 -11.02 16 19 C 0.09 4.43 5.58 -21.29 -0.12 4.31 16 20 C -0.50 -25.80 9.05 23.46 0.21 -25.59 16 21 H 0.08 3.87 7.91 -2.91 -0.02 3.85 16 22 C 0.04 1.77 5.14 85.26 0.44 2.21 16 23 N -0.82 -41.87 10.95 21.83 0.24 -41.63 16 24 Si 0.98 36.81 29.60 68.60 2.03 38.84 16 25 H -0.26 -9.43 7.11 99.48 0.71 -8.73 16 26 H -0.27 -9.70 7.11 99.48 0.71 -8.99 16 27 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 28 C -0.19 -9.53 8.70 22.73 0.20 -9.34 16 29 C -0.08 -3.56 9.67 22.22 0.21 -3.34 16 30 C -0.09 -1.88 4.95 32.02 0.16 -1.72 16 31 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.06 0.97 8.13 -2.39 -0.02 0.95 16 35 H 0.07 0.97 8.13 -2.39 -0.02 0.95 16 36 H 0.06 0.88 7.83 -2.39 -0.02 0.86 16 37 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.06 1.04 7.83 -2.39 -0.02 1.03 16 39 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.41 9.85 8.44 -92.71 -0.78 9.07 16 41 H 0.05 1.87 8.08 -2.38 -0.02 1.85 16 42 H 0.05 1.94 8.08 -2.38 -0.02 1.92 16 43 H 0.11 4.02 8.06 -2.91 -0.02 3.99 16 44 H 0.10 4.33 8.06 -2.91 -0.02 4.31 16 45 H 0.29 13.31 8.30 -92.71 -0.77 12.54 16 46 H 0.10 5.33 6.15 -2.91 -0.02 5.31 16 47 H 0.10 4.10 8.06 -2.91 -0.02 4.08 16 48 H 0.08 1.63 8.14 -2.38 -0.02 1.62 16 49 H 0.06 1.67 6.89 -2.39 -0.02 1.65 16 Total: -1.00 -68.95 407.41 4.21 -64.74 By element: Atomic # 1 Polarization: 33.39 SS G_CDS: 0.17 Total: 33.56 kcal Atomic # 6 Polarization: -33.09 SS G_CDS: 4.57 Total: -28.52 kcal Atomic # 7 Polarization: -61.75 SS G_CDS: -2.32 Total: -64.07 kcal Atomic # 8 Polarization: -44.31 SS G_CDS: -0.23 Total: -44.55 kcal Atomic # 14 Polarization: 36.81 SS G_CDS: 2.03 Total: 38.84 kcal Total: -68.95 4.21 -64.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869061923.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.861 kcal (2) G-P(sol) polarization free energy of solvation -68.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds