Wall clock time and date at job start Wed Apr 1 2020 04:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47119 * 2 1 4 4 C 1.46504 * 120.00311 * 270.00204 * 3 2 1 5 5 C 1.50697 * 109.47275 * 270.00058 * 4 3 2 6 6 H 1.08000 * 119.99865 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00141 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00183 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00215 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46973 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47476 * 120.00005 * 9 7 5 12 12 H 1.48502 * 109.47062 * 240.00192 * 9 7 5 13 13 C 1.34779 * 120.00262 * 90.00483 * 3 2 1 14 14 O 1.21273 * 120.00500 * 180.02562 * 13 3 2 15 15 C 1.50698 * 119.99405 * 359.97438 * 13 3 2 16 16 O 1.45201 * 109.46837 * 180.02562 * 15 13 3 17 17 C 1.34808 * 116.99960 * 180.02562 * 16 15 13 18 18 O 1.21533 * 119.99580 * 359.97438 * 17 16 15 19 19 C 1.46949 * 119.99853 * 179.97438 * 17 16 15 20 20 C 1.33081 * 119.99679 * 179.97438 * 19 17 16 21 21 C 1.50701 * 119.99754 * 179.72117 * 20 19 17 22 22 C 1.53000 * 109.46860 * 125.27945 * 21 20 19 23 23 C 1.50700 * 109.47169 * 180.02562 * 22 21 20 24 24 C 1.38236 * 120.00248 * 269.72401 * 23 22 21 25 25 C 1.38231 * 120.00189 * 179.76644 * 24 23 22 26 26 C 1.38231 * 120.00126 * 0.50625 * 25 24 23 27 27 C 1.38240 * 119.99745 * 359.75005 * 26 25 24 28 28 C 1.38232 * 120.00043 * 359.97438 * 27 26 25 29 29 H 1.09003 * 109.46704 * 299.99545 * 1 2 3 30 30 H 1.08994 * 109.47336 * 59.99706 * 1 2 3 31 31 H 1.08997 * 109.47028 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46704 * 240.00455 * 2 1 3 33 33 H 1.08994 * 109.47336 * 120.00294 * 2 1 3 34 34 H 1.09005 * 109.46837 * 30.00421 * 4 3 2 35 35 H 1.09004 * 109.47376 * 149.99678 * 4 3 2 36 36 H 0.96993 * 120.00321 * 180.02562 * 8 7 5 37 37 H 1.09003 * 109.47490 * 60.00216 * 15 13 3 38 38 H 1.08997 * 109.47340 * 300.00006 * 15 13 3 39 39 H 1.08002 * 119.99900 * 359.97438 * 19 17 16 40 40 H 1.08002 * 120.00423 * 0.02562 * 20 19 17 41 41 H 1.08998 * 109.47474 * 245.27701 * 21 20 19 42 42 H 1.09001 * 109.47291 * 5.27988 * 21 20 19 43 43 H 1.09007 * 109.47145 * 300.00092 * 22 21 20 44 44 H 1.09001 * 109.47134 * 59.99947 * 22 21 20 45 45 H 1.08007 * 119.99484 * 359.97438 * 24 23 22 46 46 H 1.07999 * 119.99623 * 180.23200 * 25 24 23 47 47 H 1.08001 * 120.00011 * 179.72145 * 26 25 24 48 48 H 1.07997 * 119.99428 * 179.97438 * 27 26 25 49 49 H 1.07999 * 119.99797 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0963 7 6 4.1490 2.3898 -2.8780 8 7 3.3487 3.1251 -3.6186 9 14 5.9130 2.0958 -3.4177 10 1 6.6007 1.2407 -2.4172 11 1 5.9200 1.4166 -4.7383 12 1 6.6208 3.3967 -3.5264 13 6 2.2431 2.0166 1.1672 14 8 2.6469 3.1601 1.1672 15 6 1.9914 1.3062 2.4722 16 8 2.3056 2.1960 3.5759 17 6 2.1339 1.7101 4.8216 18 8 1.7322 0.5742 4.9807 19 6 2.4325 2.5540 5.9870 20 6 2.2625 2.0746 7.2167 21 6 2.5746 2.9379 8.4118 22 6 1.3495 3.0059 9.3257 23 6 1.6613 3.8697 10.5206 24 6 2.1891 3.3019 11.6651 25 6 2.4797 4.0949 12.7594 26 6 2.2328 5.4542 12.7129 27 6 1.7001 6.0213 11.5702 28 6 1.4148 5.2291 10.4739 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.5816 1.6878 -2.0284 35 1 2.0955 3.1411 -1.1384 36 1 3.6745 3.5150 -4.4448 37 1 2.6213 0.4185 2.5301 38 1 0.9434 1.0125 2.5298 39 1 2.7898 3.5634 5.8454 40 1 1.9055 1.0651 7.3582 41 1 3.4136 2.5096 8.9602 42 1 2.8342 3.9421 8.0768 43 1 0.5104 3.4341 8.7773 44 1 1.0899 2.0016 9.6608 45 1 2.3775 2.2390 11.7031 46 1 2.8954 3.6518 13.6522 47 1 2.4556 6.0731 13.5695 48 1 1.5068 7.0832 11.5341 49 1 0.9982 5.6720 9.5814 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870034990.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:01 Heat of formation + Delta-G solvation = -108.230183 kcal Electronic energy + Delta-G solvation = -27984.306204 eV Core-core repulsion = 23875.784938 eV Total energy + Delta-G solvation = -4108.521266 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.67562 -40.55909 -40.15472 -37.79968 -37.00901 -36.54907 -34.94592 -33.55159 -31.76547 -31.71862 -30.86006 -29.83387 -28.38745 -25.91483 -24.85246 -24.17644 -23.41684 -23.07580 -21.70850 -20.66583 -20.16915 -19.12989 -18.64778 -18.08051 -17.73429 -17.58529 -17.50526 -16.97273 -16.27471 -16.19247 -16.04814 -15.90875 -14.96158 -14.87802 -14.75088 -14.66245 -14.47453 -14.22914 -14.18215 -13.92887 -13.77603 -13.61381 -13.47572 -13.29548 -13.08122 -12.97847 -12.71918 -12.68845 -12.51855 -12.23592 -12.12169 -12.06308 -11.89384 -11.79482 -11.71567 -11.69925 -11.59079 -10.74714 -10.65711 -10.56841 -9.77604 -9.55670 -9.55179 -8.24039 -6.38640 0.04036 0.49733 0.54593 1.30537 1.36550 1.39115 1.50684 1.60172 1.88602 2.32841 2.45917 2.92071 3.06053 3.41859 3.54057 3.81850 3.92962 3.96384 3.99533 4.06963 4.14602 4.20516 4.29434 4.32342 4.36067 4.37346 4.40010 4.58227 4.67680 4.69382 4.76010 4.86775 4.93750 4.94140 5.02005 5.11832 5.16595 5.20380 5.22122 5.25682 5.34079 5.35482 5.43074 5.53647 5.62684 5.68189 5.76939 5.78929 6.03392 6.17734 6.53595 6.65653 6.70810 7.20144 7.35667 8.83598 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017567 B = 0.001520 C = 0.001457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.542451 B =18412.572054 C =19208.377767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.595 5.595 4 C 0.263 3.737 5 C -0.547 4.547 6 H 0.054 0.946 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.969 3.031 10 H -0.268 1.268 11 H -0.268 1.268 12 H -0.282 1.282 13 C 0.499 3.501 14 O -0.578 6.578 15 C 0.063 3.937 16 O -0.349 6.349 17 C 0.493 3.507 18 O -0.536 6.536 19 C -0.215 4.215 20 C -0.019 4.019 21 C -0.090 4.090 22 C -0.075 4.075 23 C -0.091 4.091 24 C -0.127 4.127 25 C -0.129 4.129 26 C -0.137 4.137 27 C -0.131 4.131 28 C -0.131 4.131 29 H 0.056 0.944 30 H 0.044 0.956 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.030 0.970 35 H -0.001 1.001 36 H 0.268 0.732 37 H 0.117 0.883 38 H 0.121 0.879 39 H 0.150 0.850 40 H 0.133 0.867 41 H 0.102 0.898 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.089 0.911 45 H 0.137 0.863 46 H 0.137 0.863 47 H 0.135 0.865 48 H 0.132 0.868 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.435 -3.678 32.026 32.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.327 5.327 4 C 0.142 3.858 5 C -0.585 4.585 6 H 0.073 0.927 7 C -0.190 4.190 8 N -0.566 5.566 9 Si 0.793 3.207 10 H -0.192 1.192 11 H -0.193 1.193 12 H -0.208 1.208 13 C 0.286 3.714 14 O -0.458 6.458 15 C -0.014 4.014 16 O -0.265 6.265 17 C 0.342 3.658 18 O -0.429 6.429 19 C -0.234 4.234 20 C -0.038 4.038 21 C -0.126 4.126 22 C -0.112 4.112 23 C -0.091 4.091 24 C -0.145 4.145 25 C -0.147 4.147 26 C -0.155 4.155 27 C -0.149 4.149 28 C -0.149 4.149 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.117 0.883 32 H 0.101 0.899 33 H 0.115 0.885 34 H 0.048 0.952 35 H 0.018 0.982 36 H 0.077 0.923 37 H 0.134 0.866 38 H 0.139 0.861 39 H 0.167 0.833 40 H 0.151 0.849 41 H 0.120 0.880 42 H 0.100 0.900 43 H 0.095 0.905 44 H 0.107 0.893 45 H 0.155 0.845 46 H 0.155 0.845 47 H 0.152 0.848 48 H 0.150 0.850 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.369 -3.331 31.838 32.459 hybrid contribution 0.743 0.233 -0.995 1.264 sum -4.626 -3.098 30.843 31.342 Atomic orbital electron populations 1.22175 0.94291 1.03809 1.01831 1.21870 0.95590 0.80958 1.04406 1.48208 1.63558 1.15265 1.05657 1.18796 0.95605 0.91663 0.79751 1.21749 0.97859 1.32229 1.06683 0.92740 1.25845 1.02411 0.94385 0.96359 1.70051 1.37680 1.34124 1.14762 0.85353 0.78938 0.78004 0.78407 1.19193 1.19304 1.20781 1.20560 0.78327 0.86647 0.85883 1.90674 1.47181 1.20205 1.87768 1.22805 1.04643 0.92018 0.81949 1.86671 1.79157 1.45357 1.15269 1.22219 0.73719 0.86196 0.83704 1.90809 1.44610 1.20482 1.86967 1.21996 1.10602 1.01595 0.89161 1.24037 0.87144 0.99797 0.92809 1.20882 0.99060 0.99751 0.92936 1.20539 0.97429 1.00218 0.92991 1.19999 0.99091 0.94240 0.95754 1.21343 0.99265 1.00840 0.93027 1.21454 0.99900 0.94164 0.99205 1.21458 0.99545 0.95731 0.98722 1.21431 0.99166 1.00687 0.93645 1.21329 1.00688 0.93736 0.99185 0.92475 0.93654 0.88334 0.89935 0.88452 0.95187 0.98248 0.92342 0.86563 0.86079 0.83258 0.84925 0.87971 0.89999 0.90456 0.89287 0.84548 0.84530 0.84756 0.84966 0.85372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.04 10.24 71.98 0.74 -3.30 16 2 C 0.09 2.85 5.93 86.38 0.51 3.36 16 3 N -0.59 -25.55 2.46 -826.16 -2.03 -27.58 16 4 C 0.26 14.25 5.16 85.63 0.44 14.69 16 5 C -0.55 -31.74 9.39 25.60 0.24 -31.50 16 6 H 0.05 3.13 7.81 -2.91 -0.02 3.11 16 7 C 0.01 0.53 5.46 84.65 0.46 0.99 16 8 N -0.93 -56.09 13.29 21.45 0.28 -55.81 16 9 Si 0.97 45.15 29.54 68.60 2.03 47.17 16 10 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 12 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 13 C 0.50 21.85 7.75 87.66 0.68 22.53 16 14 O -0.58 -31.66 16.08 15.79 0.25 -31.41 16 15 C 0.06 2.03 4.51 71.24 0.32 2.35 16 16 O -0.35 -11.95 9.77 -50.81 -0.50 -12.44 16 17 C 0.49 13.86 7.91 70.10 0.55 14.41 16 18 O -0.54 -16.05 16.01 19.73 0.32 -15.74 16 19 C -0.21 -4.31 9.76 23.40 0.23 -4.08 16 20 C -0.02 -0.27 9.09 24.53 0.22 -0.05 16 21 C -0.09 -0.87 5.65 29.85 0.17 -0.70 16 22 C -0.07 -0.69 5.33 29.85 0.16 -0.53 16 23 C -0.09 -1.07 5.13 -19.87 -0.10 -1.17 16 24 C -0.13 -1.39 9.70 22.27 0.22 -1.18 16 25 C -0.13 -1.40 10.05 22.27 0.22 -1.18 16 26 C -0.14 -1.55 10.05 22.27 0.22 -1.32 16 27 C -0.13 -1.60 10.05 22.27 0.22 -1.38 16 28 C -0.13 -1.67 9.70 22.27 0.22 -1.45 16 29 H 0.06 1.34 7.22 -2.39 -0.02 1.33 16 30 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.08 2.61 8.07 -2.39 -0.02 2.59 16 33 H 0.10 2.34 6.44 -2.39 -0.02 2.32 16 34 H 0.03 1.64 8.07 -2.38 -0.02 1.62 16 35 H 0.00 -0.04 7.42 -2.39 -0.02 -0.06 16 36 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 37 H 0.12 3.26 7.40 -2.39 -0.02 3.25 16 38 H 0.12 3.25 7.18 -2.39 -0.02 3.24 16 39 H 0.15 2.70 7.88 -2.91 -0.02 2.68 16 40 H 0.13 1.87 7.49 -2.91 -0.02 1.84 16 41 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.08 0.82 7.82 -2.39 -0.02 0.80 16 43 H 0.08 0.75 8.09 -2.38 -0.02 0.73 16 44 H 0.09 0.65 8.08 -2.39 -0.02 0.63 16 45 H 0.14 1.00 8.06 -2.91 -0.02 0.98 16 46 H 0.14 0.94 8.06 -2.91 -0.02 0.92 16 47 H 0.13 1.01 8.06 -2.91 -0.02 0.99 16 48 H 0.13 1.19 8.06 -2.91 -0.02 1.16 16 49 H 0.13 1.38 8.06 -2.91 -0.02 1.35 16 Total: -1.00 -79.51 421.30 7.01 -72.50 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 0.93 Total: 12.81 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: 5.73 Total: 10.49 kcal Atomic # 7 Polarization: -81.65 SS G_CDS: -1.74 Total: -83.39 kcal Atomic # 8 Polarization: -59.66 SS G_CDS: 0.07 Total: -59.59 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -79.51 7.01 -72.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870034990.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.730 kcal (2) G-P(sol) polarization free energy of solvation -79.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds