Wall clock time and date at job start Wed Apr 1 2020 03:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46805 * 2 1 4 4 O 1.45197 * 109.47282 * 120.00878 * 2 1 3 5 5 C 1.34799 * 116.99547 * 269.99570 * 4 2 1 6 6 O 1.21537 * 120.00077 * 0.02562 * 5 4 2 7 7 C 1.46947 * 119.99760 * 180.02562 * 5 4 2 8 8 C 1.33084 * 120.00268 * 174.06224 * 7 5 4 9 9 C 1.50703 * 119.99499 * 4.24315 * 8 7 5 10 10 C 1.53008 * 109.46883 * 183.58906 * 9 8 7 11 11 C 1.50703 * 109.46883 * 179.97438 * 10 9 8 12 12 C 1.38237 * 119.99860 * 269.72140 * 11 10 9 13 13 C 1.38231 * 120.00037 * 179.76670 * 12 11 10 14 14 C 1.38239 * 119.99817 * 0.51201 * 13 12 11 15 15 C 1.38231 * 120.00015 * 359.74365 * 14 13 12 16 16 C 1.38233 * 120.00301 * 0.02562 * 15 14 13 17 17 C 1.50699 * 109.46712 * 240.00761 * 2 1 3 18 18 O 1.21286 * 119.99880 * 244.99867 * 17 2 1 19 19 N 1.34779 * 120.00227 * 64.99345 * 17 2 1 20 20 C 1.46494 * 119.99794 * 359.72865 * 19 17 2 21 21 C 1.46506 * 119.99870 * 179.97438 * 19 17 2 22 22 C 1.50697 * 109.47286 * 269.72953 * 21 19 17 23 23 H 1.08007 * 119.99957 * 359.97438 * 22 21 19 24 24 C 1.37874 * 119.99996 * 180.02562 * 22 21 19 25 25 N 1.31513 * 119.99990 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00056 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47240 * 89.99623 * 26 24 22 28 28 H 1.48494 * 109.47453 * 209.99849 * 26 24 22 29 29 H 1.48501 * 109.47078 * 330.00223 * 26 24 22 30 30 H 1.09008 * 109.47146 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46852 * 299.98991 * 1 2 3 32 32 H 1.08996 * 109.47730 * 59.99248 * 1 2 3 33 33 H 1.07997 * 120.00466 * 354.06033 * 7 5 4 34 34 H 1.07996 * 120.00657 * 184.24247 * 8 7 5 35 35 H 1.09000 * 109.47052 * 303.58419 * 9 8 7 36 36 H 1.08999 * 109.47815 * 63.59175 * 9 8 7 37 37 H 1.09000 * 109.46879 * 299.99618 * 10 9 8 38 38 H 1.09003 * 109.47339 * 59.99848 * 10 9 8 39 39 H 1.08003 * 119.99891 * 0.02562 * 12 11 10 40 40 H 1.08000 * 120.00476 * 180.22937 * 13 12 11 41 41 H 1.07998 * 119.99858 * 179.72273 * 14 13 12 42 42 H 1.08009 * 120.00261 * 179.97438 * 15 14 13 43 43 H 1.07999 * 120.00664 * 179.97438 * 16 15 14 44 44 H 1.08994 * 109.47391 * 270.26626 * 20 19 17 45 45 H 1.09003 * 109.47368 * 30.27200 * 20 19 17 46 46 H 1.09007 * 109.46913 * 150.26969 * 20 19 17 47 47 H 1.08999 * 109.46846 * 29.73223 * 21 19 17 48 48 H 1.08996 * 109.46636 * 149.72890 * 21 19 17 49 49 H 0.96998 * 119.99980 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0141 -0.6846 1.1854 5 6 2.2181 0.0670 2.2857 6 8 1.9971 1.2617 2.2551 7 6 2.7079 -0.5582 3.5220 8 6 3.0219 0.1981 4.5711 9 6 2.7853 1.6858 4.5251 10 6 3.3109 2.3257 5.8117 11 6 3.0749 3.8134 5.7654 12 6 4.0395 4.6501 5.2357 13 6 3.8210 6.0142 5.1888 14 6 2.6424 6.5428 5.6813 15 6 1.6802 5.7067 6.2158 16 6 1.8965 4.3421 6.2584 17 6 2.0323 -0.7103 -1.2306 18 8 2.6529 -1.7466 -1.1218 19 7 1.7917 -0.1940 -2.4521 20 6 1.0368 1.0546 -2.5838 21 6 2.2804 -0.8842 -3.6483 22 6 3.6590 -0.3810 -3.9907 23 1 4.1244 0.3776 -3.3787 24 6 4.3257 -0.8881 -5.0858 25 7 3.7588 -1.8113 -5.8313 26 14 6.0343 -0.2637 -5.5106 27 1 7.0515 -1.0949 -4.8180 28 1 6.2417 -0.3489 -6.9786 29 1 6.1681 1.1489 -5.0729 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5139 -0.8898 33 1 2.8130 -1.6315 3.5795 34 1 3.4461 -0.2541 5.4553 35 1 3.3082 2.1105 3.6682 36 1 1.7170 1.8812 4.4322 37 1 2.7880 1.9010 6.6686 38 1 4.3792 2.1304 5.9046 39 1 4.9620 4.2375 4.8546 40 1 4.5730 6.6676 4.7716 41 1 2.4737 7.6090 5.6488 42 1 0.7595 6.1197 6.6010 43 1 1.1449 3.6888 6.6763 44 1 -0.0265 0.8294 -2.6654 45 1 1.2099 1.6782 -1.7067 46 1 1.3654 1.5853 -3.4775 47 1 2.3221 -1.9566 -3.4575 48 1 1.6052 -0.6894 -4.4815 49 1 4.2280 -2.1683 -6.6015 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870035540.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:02 Heat of formation + Delta-G solvation = -80.235294 kcal Electronic energy + Delta-G solvation = -29167.117882 eV Core-core repulsion = 25059.810566 eV Total energy + Delta-G solvation = -4107.307316 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.61057 -39.57286 -38.96699 -36.82489 -35.32450 -34.89864 -32.99484 -32.76458 -31.50521 -31.13992 -29.17623 -27.70078 -26.18170 -25.27214 -24.19263 -23.09812 -22.83286 -21.82280 -21.17266 -19.73501 -18.78061 -17.71764 -17.04186 -16.54117 -16.46661 -16.04895 -15.79935 -15.59851 -15.46451 -15.09159 -14.60350 -14.37043 -14.28605 -14.02585 -13.64038 -13.58406 -13.44769 -13.11044 -13.08680 -12.82883 -12.37252 -12.27211 -12.16253 -12.09068 -11.98580 -11.74037 -11.60193 -11.36609 -11.19828 -11.16016 -11.12235 -10.90295 -10.65169 -10.56271 -10.18105 -10.16912 -9.68028 -9.65280 -9.17142 -8.93723 -8.88449 -8.44886 -7.72113 -6.05975 -4.10852 1.01676 1.09910 1.15042 2.59526 2.91960 3.28230 3.31115 3.37176 3.40475 3.51911 3.92040 4.33609 4.43578 4.55009 4.61968 4.73720 4.82501 4.83292 4.90953 4.93616 4.94218 5.05326 5.12557 5.24171 5.27020 5.28636 5.33439 5.37538 5.51959 5.65598 5.68538 5.69911 5.77696 5.83549 5.85695 5.91060 5.97484 6.01107 6.19554 6.21213 6.22815 6.26432 6.37657 6.53595 6.75601 6.99143 7.39236 7.47101 7.80414 7.90349 8.20247 8.30129 8.85279 9.00214 9.54158 11.02159 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011929 B = 0.002113 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.657977 B =13247.398643 C =14047.175099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.071 3.929 3 H 0.105 0.895 4 O -0.323 6.323 5 C 0.488 3.512 6 O -0.510 6.510 7 C -0.195 4.195 8 C -0.054 4.054 9 C -0.094 4.094 10 C -0.086 4.086 11 C -0.078 4.078 12 C -0.116 4.116 13 C -0.118 4.118 14 C -0.127 4.127 15 C -0.119 4.119 16 C -0.118 4.118 17 C 0.508 3.492 18 O -0.520 6.520 19 N -0.596 5.596 20 C 0.077 3.923 21 C 0.247 3.753 22 C -0.528 4.528 23 H 0.057 0.943 24 C 0.061 3.939 25 N -0.894 5.894 26 Si 0.899 3.101 27 H -0.279 1.279 28 H -0.285 1.285 29 H -0.274 1.274 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.142 0.858 34 H 0.137 0.863 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.121 0.879 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.120 0.880 44 H 0.050 0.950 45 H 0.058 0.942 46 H 0.078 0.922 47 H 0.046 0.954 48 H 0.036 0.964 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.124 12.175 25.255 28.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.012 3.988 3 H 0.123 0.877 4 O -0.238 6.238 5 C 0.335 3.665 6 O -0.402 6.402 7 C -0.214 4.214 8 C -0.073 4.073 9 C -0.130 4.130 10 C -0.123 4.123 11 C -0.078 4.078 12 C -0.134 4.134 13 C -0.136 4.136 14 C -0.145 4.145 15 C -0.137 4.137 16 C -0.136 4.136 17 C 0.292 3.708 18 O -0.395 6.395 19 N -0.330 5.330 20 C -0.067 4.067 21 C 0.128 3.872 22 C -0.567 4.567 23 H 0.076 0.924 24 C -0.141 4.141 25 N -0.533 5.533 26 Si 0.727 3.273 27 H -0.205 1.205 28 H -0.211 1.211 29 H -0.199 1.199 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.160 0.840 34 H 0.155 0.845 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.138 0.862 44 H 0.069 0.931 45 H 0.076 0.924 46 H 0.097 0.903 47 H 0.064 0.936 48 H 0.054 0.946 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.839 11.835 25.061 28.323 hybrid contribution 0.913 0.483 -0.452 1.128 sum -4.925 12.318 24.609 27.957 Atomic orbital electron populations 1.22272 0.92476 1.03950 1.03938 1.22588 0.95629 0.97574 0.82969 0.87747 1.86714 1.76603 1.40955 1.19497 1.21684 0.74789 0.85260 0.84791 1.90828 1.48615 1.16023 1.84709 1.21986 1.06862 1.01541 0.90997 1.23943 0.90717 0.96080 0.96514 1.21031 1.03169 0.91128 0.97656 1.20782 1.01991 0.91059 0.98510 1.19871 0.94352 0.95539 0.98064 1.21091 0.99257 0.93504 0.99565 1.21166 0.97542 0.95322 0.99576 1.21147 0.94292 0.99757 0.99314 1.21141 0.99142 0.93702 0.99758 1.21050 0.96931 0.95246 1.00330 1.19799 0.81171 0.85934 0.83870 1.90704 1.39642 1.23408 1.85781 1.48068 1.53884 1.24107 1.06920 1.21839 0.95250 0.86826 1.02817 1.19349 0.94297 0.93817 0.79747 1.21421 1.01226 1.22802 1.11248 0.92446 1.24934 0.98208 0.94917 0.96030 1.69929 1.38088 1.27952 1.17325 0.86483 0.84312 0.79192 0.77356 1.20508 1.21096 1.19910 0.91029 0.91353 0.89370 0.84007 0.84548 0.88613 0.89030 0.90842 0.90790 0.86075 0.86123 0.86265 0.86201 0.86168 0.93148 0.92357 0.90312 0.93639 0.94613 0.92665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 9.27 37.16 0.34 -1.92 16 2 C 0.07 1.22 2.17 -27.88 -0.06 1.16 16 3 H 0.10 1.72 6.16 -51.93 -0.32 1.40 16 4 O -0.32 -5.62 9.43 -47.43 -0.45 -6.07 16 5 C 0.49 7.17 7.84 34.26 0.27 7.43 16 6 O -0.51 -7.87 12.37 -19.29 -0.24 -8.11 16 7 C -0.19 -2.10 10.15 -37.85 -0.38 -2.48 16 8 C -0.05 -0.45 9.65 -36.10 -0.35 -0.79 16 9 C -0.09 -0.86 3.79 -27.88 -0.11 -0.97 16 10 C -0.09 -0.62 5.29 -27.88 -0.15 -0.77 16 11 C -0.08 -0.69 5.13 -104.62 -0.54 -1.23 16 12 C -0.12 -1.05 9.70 -39.58 -0.38 -1.43 16 13 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 14 C -0.13 -1.04 10.05 -39.58 -0.40 -1.44 16 15 C -0.12 -0.97 10.05 -39.59 -0.40 -1.37 16 16 C -0.12 -0.99 9.70 -39.58 -0.38 -1.38 16 17 C 0.51 11.13 7.10 -10.98 -0.08 11.06 16 18 O -0.52 -13.79 16.08 -14.06 -0.23 -14.02 16 19 N -0.60 -12.84 2.86 -182.96 -0.52 -13.36 16 20 C 0.08 1.21 8.92 59.84 0.53 1.75 16 21 C 0.25 6.48 5.16 -5.19 -0.03 6.46 16 22 C -0.53 -15.11 9.39 -34.44 -0.32 -15.44 16 23 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 24 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 25 N -0.89 -26.61 13.29 55.43 0.74 -25.88 16 26 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 27 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 28 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 29 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 30 H 0.07 0.98 8.14 -51.92 -0.42 0.55 16 31 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 32 H 0.09 1.04 5.10 -51.93 -0.26 0.78 16 33 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 34 H 0.14 0.69 7.99 -52.49 -0.42 0.27 16 35 H 0.10 1.11 6.89 -51.93 -0.36 0.76 16 36 H 0.09 0.95 7.54 -51.93 -0.39 0.56 16 37 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 38 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 39 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 40 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 41 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 42 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 43 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 44 H 0.05 0.66 7.01 -51.93 -0.36 0.30 16 45 H 0.06 0.79 6.08 -51.93 -0.32 0.47 16 46 H 0.08 1.27 8.07 -51.92 -0.42 0.85 16 47 H 0.05 1.34 7.41 -51.93 -0.38 0.96 16 48 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 49 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 410.99 15.07 6.19 6.19 Total: -1.00 -35.51 410.99 -9.87 -45.38 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -7.42 Total: -0.04 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -2.92 Total: -1.11 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.21 Total: -39.24 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -0.91 Total: -28.19 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.51 -9.87 -45.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870035540.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.851 kcal (2) G-P(sol) polarization free energy of solvation -35.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds