Wall clock time and date at job start Wed Apr 1 2020 03:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46805 * 2 1 4 4 O 1.45197 * 109.47282 * 120.00878 * 2 1 3 5 5 C 1.34799 * 116.99547 * 269.99570 * 4 2 1 6 6 O 1.21537 * 120.00077 * 0.02562 * 5 4 2 7 7 C 1.46947 * 119.99760 * 180.02562 * 5 4 2 8 8 C 1.33084 * 120.00268 * 174.06224 * 7 5 4 9 9 C 1.50703 * 119.99499 * 4.24315 * 8 7 5 10 10 C 1.53008 * 109.46883 * 183.58906 * 9 8 7 11 11 C 1.50703 * 109.46883 * 179.97438 * 10 9 8 12 12 C 1.38237 * 119.99860 * 269.72140 * 11 10 9 13 13 C 1.38231 * 120.00037 * 179.76670 * 12 11 10 14 14 C 1.38239 * 119.99817 * 0.51201 * 13 12 11 15 15 C 1.38231 * 120.00015 * 359.74365 * 14 13 12 16 16 C 1.38233 * 120.00301 * 0.02562 * 15 14 13 17 17 C 1.50699 * 109.46712 * 240.00761 * 2 1 3 18 18 O 1.21286 * 119.99880 * 244.99867 * 17 2 1 19 19 N 1.34779 * 120.00227 * 64.99345 * 17 2 1 20 20 C 1.46494 * 119.99794 * 359.72865 * 19 17 2 21 21 C 1.46506 * 119.99870 * 179.97438 * 19 17 2 22 22 C 1.50697 * 109.47286 * 269.72953 * 21 19 17 23 23 H 1.08007 * 119.99957 * 359.97438 * 22 21 19 24 24 C 1.37874 * 119.99996 * 180.02562 * 22 21 19 25 25 N 1.31513 * 119.99990 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00056 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47240 * 89.99623 * 26 24 22 28 28 H 1.48494 * 109.47453 * 209.99849 * 26 24 22 29 29 H 1.48501 * 109.47078 * 330.00223 * 26 24 22 30 30 H 1.09008 * 109.47146 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46852 * 299.98991 * 1 2 3 32 32 H 1.08996 * 109.47730 * 59.99248 * 1 2 3 33 33 H 1.07997 * 120.00466 * 354.06033 * 7 5 4 34 34 H 1.07996 * 120.00657 * 184.24247 * 8 7 5 35 35 H 1.09000 * 109.47052 * 303.58419 * 9 8 7 36 36 H 1.08999 * 109.47815 * 63.59175 * 9 8 7 37 37 H 1.09000 * 109.46879 * 299.99618 * 10 9 8 38 38 H 1.09003 * 109.47339 * 59.99848 * 10 9 8 39 39 H 1.08003 * 119.99891 * 0.02562 * 12 11 10 40 40 H 1.08000 * 120.00476 * 180.22937 * 13 12 11 41 41 H 1.07998 * 119.99858 * 179.72273 * 14 13 12 42 42 H 1.08009 * 120.00261 * 179.97438 * 15 14 13 43 43 H 1.07999 * 120.00664 * 179.97438 * 16 15 14 44 44 H 1.08994 * 109.47391 * 270.26626 * 20 19 17 45 45 H 1.09003 * 109.47368 * 30.27200 * 20 19 17 46 46 H 1.09007 * 109.46913 * 150.26969 * 20 19 17 47 47 H 1.08999 * 109.46846 * 29.73223 * 21 19 17 48 48 H 1.08996 * 109.46636 * 149.72890 * 21 19 17 49 49 H 0.96998 * 119.99980 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0141 -0.6846 1.1854 5 6 2.2181 0.0670 2.2857 6 8 1.9971 1.2617 2.2551 7 6 2.7079 -0.5582 3.5220 8 6 3.0219 0.1981 4.5711 9 6 2.7853 1.6858 4.5251 10 6 3.3109 2.3257 5.8117 11 6 3.0749 3.8134 5.7654 12 6 4.0395 4.6501 5.2357 13 6 3.8210 6.0142 5.1888 14 6 2.6424 6.5428 5.6813 15 6 1.6802 5.7067 6.2158 16 6 1.8965 4.3421 6.2584 17 6 2.0323 -0.7103 -1.2306 18 8 2.6529 -1.7466 -1.1218 19 7 1.7917 -0.1940 -2.4521 20 6 1.0368 1.0546 -2.5838 21 6 2.2804 -0.8842 -3.6483 22 6 3.6590 -0.3810 -3.9907 23 1 4.1244 0.3776 -3.3787 24 6 4.3257 -0.8881 -5.0858 25 7 3.7588 -1.8113 -5.8313 26 14 6.0343 -0.2637 -5.5106 27 1 7.0515 -1.0949 -4.8180 28 1 6.2417 -0.3489 -6.9786 29 1 6.1681 1.1489 -5.0729 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5139 -0.8898 33 1 2.8130 -1.6315 3.5795 34 1 3.4461 -0.2541 5.4553 35 1 3.3082 2.1105 3.6682 36 1 1.7170 1.8812 4.4322 37 1 2.7880 1.9010 6.6686 38 1 4.3792 2.1304 5.9046 39 1 4.9620 4.2375 4.8546 40 1 4.5730 6.6676 4.7716 41 1 2.4737 7.6090 5.6488 42 1 0.7595 6.1197 6.6010 43 1 1.1449 3.6888 6.6763 44 1 -0.0265 0.8294 -2.6654 45 1 1.2099 1.6782 -1.7067 46 1 1.3654 1.5853 -3.4775 47 1 2.3221 -1.9566 -3.4575 48 1 1.6052 -0.6894 -4.4815 49 1 4.2280 -2.1683 -6.6015 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870035540.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:00 Heat of formation + Delta-G solvation = -99.039830 kcal Electronic energy + Delta-G solvation = -29167.933308 eV Core-core repulsion = 25059.810566 eV Total energy + Delta-G solvation = -4108.122742 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.85032 -40.59870 -40.12338 -37.99044 -36.73521 -36.15165 -34.92175 -33.64417 -32.89653 -31.73587 -29.93383 -29.56963 -27.69234 -26.34363 -25.61636 -24.37309 -23.43569 -23.14747 -21.78045 -20.76620 -20.37773 -18.89163 -18.68145 -17.99679 -17.59485 -17.36356 -17.19683 -16.65419 -16.36666 -16.25057 -16.03615 -15.77507 -15.16726 -14.98339 -14.75676 -14.61623 -14.34727 -14.21956 -14.15701 -13.88750 -13.75061 -13.66699 -13.53306 -13.33037 -13.06163 -13.00924 -12.81928 -12.69459 -12.60200 -12.51823 -12.29469 -12.22270 -11.88825 -11.75075 -11.72970 -11.70488 -11.18677 -10.67344 -10.63892 -10.46220 -9.79180 -9.55567 -9.54342 -8.25604 -6.40278 0.15672 0.48222 0.52919 1.34092 1.36781 1.38996 1.48258 1.60122 1.92896 2.32146 2.45552 2.89883 3.04222 3.39553 3.59348 3.70595 3.83612 3.85080 3.98623 4.13630 4.22184 4.23820 4.31155 4.33278 4.34518 4.51025 4.58876 4.60023 4.66598 4.68127 4.71431 4.78666 4.84884 4.93308 5.05240 5.06893 5.15965 5.17005 5.20697 5.22749 5.23896 5.30823 5.48983 5.59773 5.61090 5.65676 5.76120 5.76418 6.01400 6.16966 6.53438 6.68038 6.71171 7.18326 7.33766 8.81771 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011929 B = 0.002113 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.657977 B =13247.398643 C =14047.175099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.081 3.919 3 H 0.112 0.888 4 O -0.347 6.347 5 C 0.480 3.520 6 O -0.525 6.525 7 C -0.223 4.223 8 C -0.018 4.018 9 C -0.092 4.092 10 C -0.078 4.078 11 C -0.092 4.092 12 C -0.135 4.135 13 C -0.133 4.133 14 C -0.138 4.138 15 C -0.129 4.129 16 C -0.129 4.129 17 C 0.498 3.502 18 O -0.580 6.580 19 N -0.600 5.600 20 C 0.069 3.931 21 C 0.260 3.740 22 C -0.547 4.547 23 H 0.051 0.949 24 C 0.009 3.991 25 N -0.925 5.925 26 Si 0.967 3.033 27 H -0.281 1.281 28 H -0.272 1.272 29 H -0.263 1.263 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.107 0.893 33 H 0.156 0.844 34 H 0.181 0.819 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.125 0.875 40 H 0.132 0.868 41 H 0.136 0.864 42 H 0.138 0.862 43 H 0.135 0.865 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.075 0.925 47 H 0.001 0.999 48 H 0.034 0.966 49 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.288 13.829 27.203 31.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.023 3.977 3 H 0.130 0.870 4 O -0.263 6.263 5 C 0.329 3.671 6 O -0.417 6.417 7 C -0.242 4.242 8 C -0.036 4.036 9 C -0.129 4.129 10 C -0.116 4.116 11 C -0.092 4.092 12 C -0.153 4.153 13 C -0.151 4.151 14 C -0.156 4.156 15 C -0.147 4.147 16 C -0.147 4.147 17 C 0.285 3.715 18 O -0.460 6.460 19 N -0.332 5.332 20 C -0.073 4.073 21 C 0.139 3.861 22 C -0.585 4.585 23 H 0.069 0.931 24 C -0.190 4.190 25 N -0.565 5.565 26 Si 0.791 3.209 27 H -0.207 1.207 28 H -0.196 1.196 29 H -0.187 1.187 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.125 0.875 33 H 0.173 0.827 34 H 0.198 0.802 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.113 0.887 38 H 0.103 0.897 39 H 0.143 0.857 40 H 0.150 0.850 41 H 0.154 0.846 42 H 0.156 0.844 43 H 0.153 0.847 44 H 0.103 0.897 45 H 0.104 0.896 46 H 0.094 0.906 47 H 0.019 0.981 48 H 0.052 0.948 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.040 13.540 27.019 30.819 hybrid contribution 0.938 0.035 -0.995 1.368 sum -5.103 13.575 26.023 29.791 Atomic orbital electron populations 1.22270 0.89369 1.04278 1.05773 1.22460 0.97725 0.96519 0.81037 0.87002 1.86721 1.77307 1.42135 1.20164 1.22446 0.74426 0.85270 0.84969 1.90815 1.49549 1.16479 1.84868 1.22113 1.09450 1.02529 0.90126 1.24340 0.87373 0.95199 0.96709 1.20947 1.02166 0.91919 0.97839 1.20759 1.02870 0.89982 0.97944 1.20126 0.94503 0.96457 0.98126 1.21316 0.99832 0.94019 1.00149 1.21430 0.98226 0.95571 0.99834 1.21443 0.94198 1.00837 0.99114 1.21462 0.99865 0.93841 0.99529 1.21336 0.97218 0.95784 1.00351 1.20708 0.80094 0.85409 0.85243 1.90659 1.42344 1.26160 1.86802 1.48058 1.53929 1.25506 1.05682 1.22184 0.96406 0.84635 1.04031 1.18853 0.93916 0.91817 0.81524 1.21671 1.02409 1.22936 1.11505 0.93110 1.25843 1.02371 0.94976 0.95840 1.70037 1.39827 1.28834 1.17765 0.85423 0.78850 0.78930 0.77663 1.20673 1.19640 1.18742 0.91496 0.89435 0.87478 0.82663 0.80228 0.91249 0.90167 0.88688 0.89696 0.85694 0.85020 0.84617 0.84402 0.84674 0.89685 0.89598 0.90633 0.98087 0.94808 0.92260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.03 9.27 71.98 0.67 -3.36 16 2 C 0.08 2.75 2.17 29.85 0.06 2.82 16 3 H 0.11 3.60 6.16 -2.39 -0.01 3.58 16 4 O -0.35 -12.24 9.43 -50.73 -0.48 -12.72 16 5 C 0.48 13.95 7.84 70.10 0.55 14.50 16 6 O -0.52 -15.94 12.37 19.71 0.24 -15.69 16 7 C -0.22 -4.51 10.15 23.40 0.24 -4.27 16 8 C -0.02 -0.25 9.65 24.53 0.24 -0.01 16 9 C -0.09 -1.54 3.79 29.85 0.11 -1.43 16 10 C -0.08 -0.94 5.29 29.85 0.16 -0.78 16 11 C -0.09 -1.50 5.13 -19.86 -0.10 -1.60 16 12 C -0.14 -2.36 9.70 22.27 0.22 -2.14 16 13 C -0.13 -2.20 10.05 22.27 0.22 -1.97 16 14 C -0.14 -2.11 10.05 22.27 0.22 -1.89 16 15 C -0.13 -1.91 10.05 22.27 0.22 -1.69 16 16 C -0.13 -1.98 9.70 22.27 0.22 -1.76 16 17 C 0.50 22.45 7.10 87.66 0.62 23.07 16 18 O -0.58 -32.40 16.08 15.70 0.25 -32.14 16 19 N -0.60 -26.23 2.86 -851.13 -2.43 -28.66 16 20 C 0.07 2.09 8.92 127.77 1.14 3.22 16 21 C 0.26 14.20 5.16 85.63 0.44 14.64 16 22 C -0.55 -32.06 9.39 25.60 0.24 -31.82 16 23 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 24 C 0.01 0.53 5.46 84.65 0.46 0.99 16 25 N -0.93 -56.16 13.29 21.45 0.28 -55.88 16 26 Si 0.97 45.45 29.54 68.60 2.03 47.47 16 27 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 28 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 29 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 30 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 31 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 32 H 0.11 2.24 5.10 -2.39 -0.01 2.23 16 33 H 0.16 2.66 8.06 -2.91 -0.02 2.63 16 34 H 0.18 0.95 7.99 -2.91 -0.02 0.93 16 35 H 0.07 1.58 6.89 -2.39 -0.02 1.57 16 36 H 0.08 1.57 7.54 -2.39 -0.02 1.55 16 37 H 0.09 0.75 8.09 -2.39 -0.02 0.73 16 38 H 0.08 0.84 8.08 -2.39 -0.02 0.82 16 39 H 0.13 1.94 8.06 -2.91 -0.02 1.91 16 40 H 0.13 1.73 8.06 -2.91 -0.02 1.71 16 41 H 0.14 1.50 8.06 -2.91 -0.02 1.47 16 42 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 43 H 0.14 1.55 8.06 -2.91 -0.02 1.52 16 44 H 0.08 2.01 7.01 -2.39 -0.02 1.99 16 45 H 0.09 2.13 6.08 -2.39 -0.01 2.12 16 46 H 0.07 2.35 8.07 -2.38 -0.02 2.33 16 47 H 0.00 0.06 7.41 -2.39 -0.02 0.04 16 48 H 0.03 1.83 8.07 -2.39 -0.02 1.81 16 49 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -81.48 410.99 6.77 -74.71 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: 0.94 Total: 16.39 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: 5.93 Total: 6.52 kcal Atomic # 7 Polarization: -82.39 SS G_CDS: -2.15 Total: -84.54 kcal Atomic # 8 Polarization: -60.57 SS G_CDS: 0.02 Total: -60.56 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Total: -81.48 6.77 -74.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870035540.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.326 kcal (2) G-P(sol) polarization free energy of solvation -81.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds