Wall clock time and date at job start Wed Apr 1 2020 04:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45192 * 109.47160 * 2 1 4 4 C 1.34234 * 117.00141 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99789 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00022 * 179.97438 * 4 3 2 7 7 H 1.09005 * 109.46607 * 60.00470 * 6 4 3 8 8 C 1.52994 * 109.47510 * 300.00593 * 6 4 3 9 9 C 1.53002 * 109.47007 * 180.02562 * 6 4 3 10 10 C 1.53949 * 113.74087 * 278.74463 * 9 6 4 11 11 N 1.47804 * 86.03622 * 222.08314 * 10 9 6 12 12 C 1.34777 * 134.46048 * 204.64667 * 11 10 9 13 13 O 1.21281 * 120.00547 * 179.87026 * 12 11 10 14 14 C 1.50705 * 119.99574 * 359.86139 * 12 11 10 15 15 C 1.50704 * 109.46982 * 180.02562 * 14 12 11 16 16 C 1.37637 * 120.12446 * 264.73118 * 15 14 12 17 17 C 1.38620 * 120.24713 * 179.72344 * 16 15 14 18 18 C 1.38661 * 120.49624 * 0.55398 * 17 16 15 19 19 C 1.37598 * 120.24920 * 359.72132 * 18 17 16 20 20 C 1.40691 * 120.12923 * 85.00463 * 15 14 12 21 21 C 1.41396 * 120.24369 * 359.97438 * 20 15 14 22 22 H 1.08004 * 120.00070 * 329.79039 * 21 20 15 23 23 C 1.39949 * 120.00285 * 149.79019 * 21 20 15 24 24 N 1.30822 * 120.00241 * 162.09123 * 23 21 20 25 25 Si 1.86805 * 119.99544 * 342.08625 * 23 21 20 26 26 H 1.48506 * 109.46511 * 95.39222 * 25 23 21 27 27 H 1.48498 * 109.47070 * 215.39232 * 25 23 21 28 28 H 1.48499 * 109.47212 * 335.39928 * 25 23 21 29 29 C 1.47583 * 91.05100 * 24.55084 * 11 10 9 30 30 H 1.09004 * 109.47364 * 300.00110 * 1 2 3 31 31 H 1.09003 * 109.46855 * 60.00286 * 1 2 3 32 32 H 1.09002 * 109.47147 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.46921 * 239.99469 * 2 1 3 34 34 H 1.09003 * 109.46855 * 119.99714 * 2 1 3 35 35 H 1.09006 * 109.46927 * 300.00107 * 8 6 4 36 36 H 1.08999 * 109.47169 * 59.99477 * 8 6 4 37 37 H 1.08999 * 109.47259 * 180.02562 * 8 6 4 38 38 H 1.08996 * 112.94197 * 50.33407 * 9 6 4 39 39 H 1.08998 * 113.77009 * 336.34760 * 10 9 6 40 40 H 1.09005 * 113.76846 * 107.74532 * 10 9 6 41 41 H 1.08998 * 109.47344 * 300.00630 * 14 12 11 42 42 H 1.09008 * 109.46860 * 60.00726 * 14 12 11 43 43 H 1.08004 * 119.87784 * 359.97282 * 16 15 14 44 44 H 1.07999 * 119.75019 * 180.29699 * 17 16 15 45 45 H 1.07998 * 119.87201 * 179.74443 * 18 17 16 46 46 H 1.07998 * 120.12362 * 179.97438 * 19 18 17 47 47 H 0.96997 * 119.99665 * 179.97438 * 24 23 21 48 48 H 1.09002 * 113.76707 * 221.15417 * 29 11 10 49 49 H 1.08997 * 113.87032 * 89.76811 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.5844 3.4700 0.8896 8 6 3.4497 3.6837 -1.2498 9 6 5.4487 2.8573 0.0001 10 6 6.0563 2.6115 1.3931 11 7 7.0710 3.6175 1.0151 12 6 8.3378 3.8710 1.3991 13 8 8.9501 4.7914 0.9002 14 6 8.9934 3.0108 2.4485 15 6 10.3970 3.5012 2.6950 16 6 11.4570 2.9212 2.0360 17 6 12.7485 3.3741 2.2565 18 6 12.9891 4.4068 3.1500 19 6 11.9451 4.9975 3.8241 20 6 10.6293 4.5497 3.6039 21 6 9.5486 5.1497 4.2905 22 1 8.5733 5.1941 3.8287 23 6 9.7426 5.6859 5.5685 24 7 8.8766 6.5341 6.0605 25 14 11.2383 5.1904 6.5720 26 1 12.3160 6.1945 6.3827 27 1 10.8704 5.1239 8.0091 28 1 11.7177 3.8590 6.1216 29 6 6.1413 4.2313 0.0471 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.7861 3.1510 -2.1394 36 1 2.3612 3.7407 -1.2503 37 1 3.8667 4.6908 -1.2504 38 1 5.8395 2.1949 -0.7722 39 1 5.4122 2.9245 2.2148 40 1 6.4595 1.6075 1.5256 41 1 8.4211 3.0677 3.3745 42 1 9.0246 1.9772 2.1036 43 1 11.2816 2.1129 1.3415 44 1 13.5739 2.9164 1.7315 45 1 13.9997 4.7489 3.3172 46 1 12.1349 5.8014 4.5199 47 1 9.0110 6.9054 6.9464 48 1 6.6123 4.5181 -0.8932 49 1 5.5216 5.0215 0.4708 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874728084.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:06 Heat of formation + Delta-G solvation = -98.577284 kcal Electronic energy + Delta-G solvation = -29871.457416 eV Core-core repulsion = 25763.354732 eV Total energy + Delta-G solvation = -4108.102684 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.94116 -41.05419 -39.87385 -38.66052 -37.57230 -35.49981 -34.77389 -33.55070 -32.44563 -32.18127 -30.25435 -28.35795 -27.33534 -26.48996 -25.82371 -24.18697 -23.23801 -22.78829 -21.66184 -20.83299 -19.95346 -19.25919 -18.65694 -17.95332 -17.80705 -17.60884 -17.46193 -16.77814 -16.51106 -16.12689 -15.88283 -15.49445 -15.36920 -14.92559 -14.59545 -14.51692 -14.39275 -14.11367 -13.87839 -13.73120 -13.67843 -13.45445 -13.26947 -13.17937 -13.13236 -12.86672 -12.72994 -12.69451 -12.55456 -12.51733 -12.46612 -12.00873 -11.94332 -11.79844 -11.55141 -11.47736 -11.40216 -11.27658 -10.98838 -10.73955 -9.68548 -9.41821 -9.30692 -8.87585 -6.46055 0.77290 0.88475 1.19786 1.26078 1.38470 1.48432 1.64259 1.71474 1.98066 2.13493 2.62780 3.20682 3.43341 3.58825 3.67257 3.84385 4.04100 4.05663 4.11483 4.17009 4.22804 4.24953 4.29829 4.39667 4.41764 4.43673 4.48829 4.53232 4.57065 4.66882 4.70052 4.83344 4.90414 4.91147 4.92627 4.95729 4.97385 5.08240 5.14650 5.18181 5.23082 5.33548 5.36243 5.51595 5.65920 5.85248 5.93331 6.03427 6.27749 6.44236 6.69160 6.74852 6.79482 6.89129 7.28874 8.20570 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015548 B = 0.002372 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.406237 B =11799.225824 C =12450.517968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 O -0.358 6.358 4 C 0.469 3.531 5 O -0.533 6.533 6 C -0.069 4.069 7 H 0.133 0.867 8 C -0.142 4.142 9 C -0.086 4.086 10 C 0.104 3.896 11 N -0.659 5.659 12 C 0.537 3.463 13 O -0.579 6.579 14 C -0.066 4.066 15 C -0.175 4.175 16 C -0.080 4.080 17 C -0.229 4.229 18 C -0.090 4.090 19 C -0.255 4.255 20 C 0.082 3.918 21 C -0.469 4.469 22 H 0.054 0.946 23 C 0.048 3.952 24 N -0.851 5.851 25 Si 0.963 3.037 26 H -0.266 1.266 27 H -0.276 1.276 28 H -0.252 1.252 29 C 0.110 3.890 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.107 0.893 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.111 0.889 43 H 0.123 0.877 44 H 0.130 0.870 45 H 0.124 0.876 46 H 0.093 0.907 47 H 0.292 0.708 48 H 0.080 0.920 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.989 -11.870 -11.101 23.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 O -0.275 6.275 4 C 0.313 3.687 5 O -0.423 6.423 6 C -0.088 4.088 7 H 0.150 0.850 8 C -0.199 4.199 9 C -0.105 4.105 10 C -0.018 4.018 11 N -0.396 5.396 12 C 0.328 3.672 13 O -0.458 6.458 14 C -0.105 4.105 15 C -0.177 4.177 16 C -0.098 4.098 17 C -0.248 4.248 18 C -0.108 4.108 19 C -0.274 4.274 20 C 0.080 3.920 21 C -0.499 4.499 22 H 0.072 0.928 23 C -0.166 4.166 24 N -0.478 5.478 25 Si 0.787 3.213 26 H -0.192 1.192 27 H -0.203 1.203 28 H -0.175 1.175 29 C -0.012 4.012 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.115 0.885 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.125 0.875 39 H 0.115 0.885 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.129 0.871 43 H 0.141 0.859 44 H 0.148 0.852 45 H 0.142 0.858 46 H 0.110 0.890 47 H 0.102 0.898 48 H 0.098 0.902 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -16.425 -11.485 -11.115 22.918 hybrid contribution 0.522 0.184 0.743 0.927 sum -15.903 -11.300 -10.372 22.095 Atomic orbital electron populations 1.21821 0.90651 1.04211 1.03731 1.23252 0.96927 0.79418 1.02460 1.86506 1.24022 1.33416 1.83580 1.24002 0.80649 0.92828 0.71219 1.90678 1.61025 1.44140 1.46412 1.21101 0.93225 0.89718 1.04761 0.84978 1.21780 1.02996 1.00881 0.94221 1.22885 0.92698 0.96900 0.98042 1.23544 0.87435 0.93168 0.97672 1.50198 1.10902 1.35291 1.43171 1.20815 0.80377 0.84039 0.81953 1.90649 1.64510 1.33091 1.57539 1.20227 0.93951 0.98893 0.97439 1.19548 0.93984 0.99702 1.04416 1.20883 0.92739 0.98921 0.97258 1.20880 0.96695 1.02372 1.04866 1.20993 0.97920 0.95963 0.95942 1.21144 0.94134 1.04733 1.07399 1.17736 0.92380 0.90038 0.91891 1.19290 0.96751 1.32901 1.00929 0.92817 1.26783 0.99561 0.91277 0.98984 1.69733 1.37469 1.22139 1.18455 0.85519 0.78217 0.81146 0.76381 1.19160 1.20260 1.17544 1.23318 0.88533 0.96299 0.93020 0.91371 0.91116 0.88542 0.91356 0.91555 0.91980 0.89956 0.89559 0.87452 0.88451 0.89199 0.89167 0.87126 0.85878 0.85241 0.85800 0.88953 0.89804 0.90159 0.88313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.29 71.98 0.74 -0.39 16 2 C 0.05 0.69 6.19 71.98 0.45 1.14 16 3 O -0.36 -5.77 10.12 -51.45 -0.52 -6.29 16 4 C 0.47 8.47 7.24 71.24 0.52 8.99 16 5 O -0.53 -12.80 15.59 21.96 0.34 -12.45 16 6 C -0.07 -0.95 2.56 -11.54 -0.03 -0.98 16 7 H 0.13 1.46 7.98 -2.38 -0.02 1.44 16 8 C -0.14 -1.45 8.95 71.98 0.64 -0.80 16 9 C -0.09 -1.62 2.68 -10.13 -0.03 -1.65 16 10 C 0.10 2.42 8.11 86.44 0.70 3.12 16 11 N -0.66 -21.27 3.61 -835.98 -3.02 -24.29 16 12 C 0.54 23.06 7.67 87.66 0.67 23.73 16 13 O -0.58 -30.59 16.76 -3.03 -0.05 -30.64 16 14 C -0.07 -2.71 4.95 29.10 0.14 -2.57 16 15 C -0.17 -8.42 4.43 -19.41 -0.09 -8.51 16 16 C -0.08 -3.43 9.66 22.22 0.21 -3.22 16 17 C -0.23 -9.49 10.05 22.46 0.23 -9.26 16 18 C -0.09 -4.00 10.02 22.22 0.22 -3.77 16 19 C -0.25 -13.07 7.17 22.73 0.16 -12.91 16 20 C 0.08 4.45 5.10 -21.29 -0.11 4.34 16 21 C -0.47 -27.21 8.55 23.46 0.20 -27.01 16 22 H 0.05 3.36 7.00 -2.91 -0.02 3.34 16 23 C 0.05 2.66 5.41 85.26 0.46 3.12 16 24 N -0.85 -48.04 13.93 21.83 0.30 -47.73 16 25 Si 0.96 44.65 24.52 68.60 1.68 46.33 16 26 H -0.27 -11.94 6.71 99.48 0.67 -11.27 16 27 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 28 H -0.25 -11.85 6.86 99.48 0.68 -11.16 16 29 C 0.11 2.62 7.54 86.48 0.65 3.27 16 30 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.07 0.90 8.13 -2.39 -0.02 0.88 16 34 H 0.07 0.92 8.13 -2.39 -0.02 0.90 16 35 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 36 H 0.08 0.70 8.11 -2.39 -0.02 0.68 16 37 H 0.09 0.76 7.51 -2.39 -0.02 0.74 16 38 H 0.11 2.16 7.91 -2.39 -0.02 2.14 16 39 H 0.10 2.02 7.99 -2.39 -0.02 2.00 16 40 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 41 H 0.09 3.85 7.13 -2.39 -0.02 3.83 16 42 H 0.11 3.68 8.05 -2.38 -0.02 3.67 16 43 H 0.12 4.43 8.06 -2.91 -0.02 4.40 16 44 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 45 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 46 H 0.09 4.74 4.76 -2.91 -0.01 4.73 16 47 H 0.29 14.81 8.30 -92.71 -0.77 14.04 16 48 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 49 H 0.10 2.06 8.10 -2.39 -0.02 2.04 16 Total: -1.00 -77.65 403.91 5.37 -72.28 By element: Atomic # 1 Polarization: 25.30 SS G_CDS: 0.88 Total: 26.17 kcal Atomic # 6 Polarization: -29.13 SS G_CDS: 5.75 Total: -23.38 kcal Atomic # 7 Polarization: -69.31 SS G_CDS: -2.72 Total: -72.03 kcal Atomic # 8 Polarization: -49.15 SS G_CDS: -0.23 Total: -49.38 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.68 Total: 46.33 kcal Total: -77.65 5.37 -72.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874728084.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.298 kcal (2) G-P(sol) polarization free energy of solvation -77.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds