Wall clock time and date at job start Wed Apr 1 2020 04:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45193 * 109.47449 * 2 1 4 4 C 1.34225 * 117.00338 * 179.97438 * 3 2 1 5 5 O 1.20827 * 119.99957 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00440 * 179.97438 * 4 3 2 7 7 H 1.09000 * 109.47159 * 300.00263 * 6 4 3 8 8 C 1.53004 * 109.47008 * 60.00236 * 6 4 3 9 9 C 1.52998 * 109.47242 * 179.97438 * 6 4 3 10 10 C 1.53952 * 113.73863 * 156.67588 * 9 6 4 11 11 N 1.47581 * 86.11637 * 222.04901 * 10 9 6 12 12 C 1.34780 * 134.49433 * 204.64141 * 11 10 9 13 13 O 1.21276 * 120.00086 * 179.97438 * 12 11 10 14 14 C 1.50696 * 119.99484 * 0.02562 * 12 11 10 15 15 C 1.50710 * 109.46712 * 180.02562 * 14 12 11 16 16 C 1.37631 * 120.12304 * 264.72125 * 15 14 12 17 17 C 1.38619 * 120.24571 * 179.72357 * 16 15 14 18 18 C 1.38658 * 120.49746 * 0.55474 * 17 16 15 19 19 C 1.37589 * 120.24851 * 359.72617 * 18 17 16 20 20 C 1.40695 * 120.12690 * 84.99917 * 15 14 12 21 21 C 1.41392 * 120.24682 * 359.97438 * 20 15 14 22 22 H 1.07996 * 120.00107 * 334.06632 * 21 20 15 23 23 C 1.39948 * 120.00012 * 154.06077 * 21 20 15 24 24 N 1.30821 * 119.99954 * 343.65408 * 23 21 20 25 25 Si 1.86800 * 119.99984 * 163.65292 * 23 21 20 26 26 H 1.48504 * 109.46992 * 90.00218 * 25 23 21 27 27 H 1.48500 * 109.47108 * 210.00276 * 25 23 21 28 28 H 1.48495 * 109.47089 * 330.00152 * 25 23 21 29 29 C 1.47581 * 91.01296 * 24.64026 * 11 10 9 30 30 H 1.09000 * 109.46726 * 300.00066 * 1 2 3 31 31 H 1.09002 * 109.46593 * 59.99925 * 1 2 3 32 32 H 1.08998 * 109.47041 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47117 * 239.99911 * 2 1 3 34 34 H 1.09004 * 109.47078 * 120.00270 * 2 1 3 35 35 H 1.09000 * 109.47138 * 60.00014 * 8 6 4 36 36 H 1.08999 * 109.47218 * 180.02562 * 8 6 4 37 37 H 1.09000 * 109.46993 * 300.00574 * 8 6 4 38 38 H 1.08998 * 112.94910 * 288.40661 * 9 6 4 39 39 H 1.09000 * 113.77147 * 336.35188 * 10 9 6 40 40 H 1.09000 * 113.76626 * 107.75046 * 10 9 6 41 41 H 1.08999 * 109.47191 * 299.99224 * 14 12 11 42 42 H 1.09000 * 109.47783 * 60.00199 * 14 12 11 43 43 H 1.07999 * 119.88040 * 359.97438 * 16 15 14 44 44 H 1.08005 * 119.75207 * 180.26261 * 17 16 15 45 45 H 1.08001 * 119.87228 * 179.74504 * 18 17 16 46 46 H 1.08009 * 120.12542 * 179.97438 * 19 18 17 47 47 H 0.97003 * 120.00122 * 179.97438 * 24 23 21 48 48 H 1.09005 * 113.76813 * 221.05760 * 29 11 10 49 49 H 1.09005 * 113.87286 * 89.67572 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9209 2.9373 0.0000 7 1 3.5854 3.4689 -0.8904 8 6 3.4488 3.6850 1.2486 9 6 5.4488 2.8571 0.0014 10 6 6.1360 4.1165 -0.5569 11 7 7.0499 3.1882 -1.2505 12 6 8.3086 3.2792 -1.7236 13 8 8.8232 2.3242 -2.2657 14 6 9.0770 4.5673 -1.5777 15 6 10.4469 4.4065 -2.1850 16 6 11.5188 4.0674 -1.3911 17 6 12.7789 3.9132 -1.9479 18 6 12.9769 4.1094 -3.3061 19 6 11.9208 4.4545 -4.1178 20 6 10.6360 4.6082 -3.5645 21 6 9.5432 4.9621 -4.3889 22 1 8.5393 4.6845 -4.1035 23 6 9.7624 5.6722 -5.5747 24 7 10.9026 6.2832 -5.7701 25 14 8.4270 5.7477 -6.8787 26 1 7.5558 6.9239 -6.6276 27 1 9.0515 5.8717 -8.2203 28 1 7.6120 4.5076 -6.8249 29 6 6.0318 2.1202 -1.2179 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 3.7843 3.1533 2.1391 36 1 3.8651 4.6923 1.2480 37 1 2.3603 3.7420 1.2481 38 1 5.8557 2.5191 0.9544 39 1 5.5066 4.6985 -1.2302 40 1 6.6231 4.7254 0.2048 41 1 8.5444 5.3682 -2.0907 42 1 9.1745 4.8147 -0.5207 43 1 11.3770 3.9168 -0.3311 44 1 13.6137 3.6427 -1.3182 45 1 13.9637 3.9906 -3.7286 46 1 12.0774 4.6073 -5.1755 47 1 11.0547 6.7751 -6.5922 48 1 6.4358 1.1352 -0.9841 49 1 5.3711 2.1140 -2.0849 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874728085.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:12 Heat of formation + Delta-G solvation = -78.995995 kcal Electronic energy + Delta-G solvation = -29896.756219 eV Core-core repulsion = 25789.502643 eV Total energy + Delta-G solvation = -4107.253576 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.10251 -39.82726 -38.11459 -37.03282 -36.58634 -33.95794 -33.57572 -31.94791 -31.64664 -29.43537 -28.92564 -26.61595 -26.21986 -25.21760 -24.72923 -23.41504 -21.95031 -20.88151 -20.23774 -19.76844 -18.52504 -17.90181 -17.12419 -17.03168 -16.69997 -16.46754 -15.60722 -15.29231 -15.05919 -14.75922 -14.38047 -14.18699 -13.86832 -13.78867 -13.47798 -13.22375 -13.08345 -12.77045 -12.71198 -12.54333 -12.38873 -12.32555 -12.15967 -11.93323 -11.81386 -11.58762 -11.52479 -11.32123 -11.12292 -10.97536 -10.95131 -10.87477 -10.83289 -10.65618 -10.42730 -10.35852 -9.43358 -9.33300 -9.11861 -9.05155 -8.34195 -7.26180 -7.23904 -6.69513 -4.29477 1.96387 2.31570 2.80581 2.95400 3.08626 3.14464 3.27388 3.30944 3.40388 3.97047 4.08450 4.34924 4.40363 4.54966 4.59747 4.69526 4.75067 4.85351 4.89021 4.96017 5.15474 5.28600 5.32062 5.37325 5.38724 5.45826 5.47358 5.54546 5.58048 5.74742 5.80861 5.88268 5.96236 6.05888 6.15141 6.19820 6.33237 6.42666 6.48096 6.56647 6.85611 7.13035 7.34618 7.47318 7.50043 7.69528 7.96871 8.08354 8.16464 8.18170 8.36518 8.69417 8.89463 8.96504 9.06553 10.24770 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013279 B = 0.002532 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.092472 B =11054.376764 C =12253.995106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.359 6.359 4 C 0.464 3.536 5 O -0.498 6.498 6 C -0.075 4.075 7 H 0.114 0.886 8 C -0.143 4.143 9 C -0.110 4.110 10 C 0.112 3.888 11 N -0.657 5.657 12 C 0.538 3.462 13 O -0.517 6.517 14 C -0.062 4.062 15 C -0.182 4.182 16 C -0.081 4.081 17 C -0.240 4.240 18 C -0.107 4.107 19 C -0.159 4.159 20 C 0.129 3.871 21 C -0.455 4.455 22 H 0.073 0.927 23 C 0.077 3.923 24 N -0.796 5.796 25 Si 0.902 3.098 26 H -0.270 1.270 27 H -0.276 1.276 28 H -0.262 1.262 29 C 0.119 3.881 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.109 0.891 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.074 0.926 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.117 0.883 47 H 0.279 0.721 48 H 0.084 0.916 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.471 -3.240 12.147 24.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.276 6.276 4 C 0.306 3.694 5 O -0.385 6.385 6 C -0.094 4.094 7 H 0.132 0.868 8 C -0.200 4.200 9 C -0.129 4.129 10 C -0.012 4.012 11 N -0.396 5.396 12 C 0.329 3.671 13 O -0.390 6.390 14 C -0.102 4.102 15 C -0.184 4.184 16 C -0.099 4.099 17 C -0.259 4.259 18 C -0.125 4.125 19 C -0.178 4.178 20 C 0.126 3.874 21 C -0.485 4.485 22 H 0.091 0.909 23 C -0.140 4.140 24 N -0.421 5.421 25 Si 0.726 3.274 26 H -0.195 1.195 27 H -0.201 1.201 28 H -0.186 1.186 29 C -0.003 4.003 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.127 0.873 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.113 0.887 42 H 0.092 0.908 43 H 0.102 0.898 44 H 0.104 0.896 45 H 0.104 0.896 46 H 0.135 0.865 47 H 0.090 0.910 48 H 0.102 0.898 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -19.609 -3.920 11.572 23.104 hybrid contribution -0.589 -0.118 -0.751 0.961 sum -20.198 -4.038 10.821 23.267 Atomic orbital electron populations 1.21807 0.92622 1.02999 1.03516 1.23032 0.95341 0.80246 1.02713 1.86494 1.24661 1.32373 1.84078 1.23752 0.80518 0.92710 0.72399 1.90706 1.60269 1.43035 1.44468 1.21118 0.95236 0.90192 1.02876 0.86769 1.21761 1.02211 1.00733 0.95330 1.23161 0.91197 0.97928 1.00657 1.23146 0.90035 0.93084 0.94899 1.50190 1.12338 1.15640 1.61460 1.21018 0.79006 0.90962 0.76075 1.90692 1.67623 1.39680 1.41048 1.20199 0.95226 0.94270 1.00513 1.19077 0.91763 1.13664 0.93904 1.20298 0.93211 0.99603 0.96792 1.20309 0.95982 1.14410 0.95186 1.20671 0.97291 1.00643 0.93930 1.21283 0.92829 1.04367 0.99358 1.17338 0.92856 0.87322 0.89862 1.19444 0.94530 1.30862 1.03695 0.90927 1.25873 0.96261 0.93313 0.98588 1.69821 1.23996 1.23019 1.25299 0.86420 0.81461 0.79556 0.79951 1.19534 1.20066 1.18590 1.22971 0.88065 0.93976 0.95333 0.91495 0.91429 0.90254 0.91137 0.91241 0.91946 0.90465 0.91156 0.87315 0.89716 0.89648 0.88717 0.90774 0.89768 0.89648 0.89575 0.86543 0.91005 0.89783 0.90877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 10.29 37.16 0.38 -0.37 16 2 C 0.06 0.45 6.19 37.16 0.23 0.68 16 3 O -0.36 -3.23 10.12 -39.24 -0.40 -3.63 16 4 C 0.46 4.67 7.06 36.01 0.25 4.93 16 5 O -0.50 -6.54 14.66 -18.75 -0.27 -6.82 16 6 C -0.07 -0.57 2.60 -91.77 -0.24 -0.81 16 7 H 0.11 0.73 7.94 -51.93 -0.41 0.32 16 8 C -0.14 -0.79 9.12 37.16 0.34 -0.45 16 9 C -0.11 -1.09 2.90 -89.69 -0.26 -1.35 16 10 C 0.11 1.17 8.17 -2.97 -0.02 1.15 16 11 N -0.66 -10.65 3.61 -178.34 -0.64 -11.29 16 12 C 0.54 11.42 7.69 -10.99 -0.08 11.33 16 13 O -0.52 -13.50 16.76 5.56 0.09 -13.41 16 14 C -0.06 -1.29 4.93 -29.03 -0.14 -1.43 16 15 C -0.18 -4.56 4.43 -103.91 -0.46 -5.02 16 16 C -0.08 -1.94 9.66 -39.66 -0.38 -2.32 16 17 C -0.24 -5.76 10.05 -39.29 -0.39 -6.16 16 18 C -0.11 -2.69 10.02 -39.66 -0.40 -3.08 16 19 C -0.16 -4.37 8.68 -38.88 -0.34 -4.71 16 20 C 0.13 3.55 5.56 -106.83 -0.59 2.96 16 21 C -0.46 -12.33 8.14 -37.74 -0.31 -12.63 16 22 H 0.07 1.93 6.67 -52.49 -0.35 1.58 16 23 C 0.08 1.97 5.16 -17.34 -0.09 1.88 16 24 N -0.80 -20.89 10.97 55.55 0.61 -20.28 16 25 Si 0.90 19.21 29.59 -169.99 -5.03 14.18 16 26 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 27 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 28 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 29 C 0.12 1.68 6.92 -2.98 -0.02 1.66 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 34 H 0.07 0.51 8.13 -51.93 -0.42 0.09 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.35 8.11 -51.93 -0.42 -0.07 16 38 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.08 0.75 7.96 -51.93 -0.41 0.34 16 40 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.09 1.92 7.06 -51.93 -0.37 1.55 16 42 H 0.07 1.29 8.05 -51.93 -0.42 0.87 16 43 H 0.08 1.78 8.06 -52.49 -0.42 1.35 16 44 H 0.09 1.82 8.06 -52.48 -0.42 1.39 16 45 H 0.09 1.93 8.06 -52.49 -0.42 1.51 16 46 H 0.12 3.27 6.22 -52.48 -0.33 2.95 16 47 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 48 H 0.08 1.35 8.05 -51.93 -0.42 0.93 16 49 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 LS Contribution 408.51 15.07 6.16 6.16 Total: -1.00 -34.50 408.51 -9.77 -44.27 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -7.75 Total: 4.57 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: -2.53 Total: -13.75 kcal Atomic # 7 Polarization: -31.54 SS G_CDS: -0.03 Total: -31.57 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -0.58 Total: -23.86 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.50 -9.77 -44.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874728085.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.728 kcal (2) G-P(sol) polarization free energy of solvation -34.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds