Wall clock time and date at job start Wed Apr 1 2020 04:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45193 * 109.47449 * 2 1 4 4 C 1.34225 * 117.00338 * 179.97438 * 3 2 1 5 5 O 1.20827 * 119.99957 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00440 * 179.97438 * 4 3 2 7 7 H 1.09000 * 109.47159 * 300.00263 * 6 4 3 8 8 C 1.53004 * 109.47008 * 60.00236 * 6 4 3 9 9 C 1.52998 * 109.47242 * 179.97438 * 6 4 3 10 10 C 1.53952 * 113.73863 * 156.67588 * 9 6 4 11 11 N 1.47581 * 86.11637 * 222.04901 * 10 9 6 12 12 C 1.34780 * 134.49433 * 204.64141 * 11 10 9 13 13 O 1.21276 * 120.00086 * 179.97438 * 12 11 10 14 14 C 1.50696 * 119.99484 * 0.02562 * 12 11 10 15 15 C 1.50710 * 109.46712 * 180.02562 * 14 12 11 16 16 C 1.37631 * 120.12304 * 264.72125 * 15 14 12 17 17 C 1.38619 * 120.24571 * 179.72357 * 16 15 14 18 18 C 1.38658 * 120.49746 * 0.55474 * 17 16 15 19 19 C 1.37589 * 120.24851 * 359.72617 * 18 17 16 20 20 C 1.40695 * 120.12690 * 84.99917 * 15 14 12 21 21 C 1.41392 * 120.24682 * 359.97438 * 20 15 14 22 22 H 1.07996 * 120.00107 * 334.06632 * 21 20 15 23 23 C 1.39948 * 120.00012 * 154.06077 * 21 20 15 24 24 N 1.30821 * 119.99954 * 343.65408 * 23 21 20 25 25 Si 1.86800 * 119.99984 * 163.65292 * 23 21 20 26 26 H 1.48504 * 109.46992 * 90.00218 * 25 23 21 27 27 H 1.48500 * 109.47108 * 210.00276 * 25 23 21 28 28 H 1.48495 * 109.47089 * 330.00152 * 25 23 21 29 29 C 1.47581 * 91.01296 * 24.64026 * 11 10 9 30 30 H 1.09000 * 109.46726 * 300.00066 * 1 2 3 31 31 H 1.09002 * 109.46593 * 59.99925 * 1 2 3 32 32 H 1.08998 * 109.47041 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47117 * 239.99911 * 2 1 3 34 34 H 1.09004 * 109.47078 * 120.00270 * 2 1 3 35 35 H 1.09000 * 109.47138 * 60.00014 * 8 6 4 36 36 H 1.08999 * 109.47218 * 180.02562 * 8 6 4 37 37 H 1.09000 * 109.46993 * 300.00574 * 8 6 4 38 38 H 1.08998 * 112.94910 * 288.40661 * 9 6 4 39 39 H 1.09000 * 113.77147 * 336.35188 * 10 9 6 40 40 H 1.09000 * 113.76626 * 107.75046 * 10 9 6 41 41 H 1.08999 * 109.47191 * 299.99224 * 14 12 11 42 42 H 1.09000 * 109.47783 * 60.00199 * 14 12 11 43 43 H 1.07999 * 119.88040 * 359.97438 * 16 15 14 44 44 H 1.08005 * 119.75207 * 180.26261 * 17 16 15 45 45 H 1.08001 * 119.87228 * 179.74504 * 18 17 16 46 46 H 1.08009 * 120.12542 * 179.97438 * 19 18 17 47 47 H 0.97003 * 120.00122 * 179.97438 * 24 23 21 48 48 H 1.09005 * 113.76813 * 221.05760 * 29 11 10 49 49 H 1.09005 * 113.87286 * 89.67572 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9209 2.9373 0.0000 7 1 3.5854 3.4689 -0.8904 8 6 3.4488 3.6850 1.2486 9 6 5.4488 2.8571 0.0014 10 6 6.1360 4.1165 -0.5569 11 7 7.0499 3.1882 -1.2505 12 6 8.3086 3.2792 -1.7236 13 8 8.8232 2.3242 -2.2657 14 6 9.0770 4.5673 -1.5777 15 6 10.4469 4.4065 -2.1850 16 6 11.5188 4.0674 -1.3911 17 6 12.7789 3.9132 -1.9479 18 6 12.9769 4.1094 -3.3061 19 6 11.9208 4.4545 -4.1178 20 6 10.6360 4.6082 -3.5645 21 6 9.5432 4.9621 -4.3889 22 1 8.5393 4.6845 -4.1035 23 6 9.7624 5.6722 -5.5747 24 7 10.9026 6.2832 -5.7701 25 14 8.4270 5.7477 -6.8787 26 1 7.5558 6.9239 -6.6276 27 1 9.0515 5.8717 -8.2203 28 1 7.6120 4.5076 -6.8249 29 6 6.0318 2.1202 -1.2179 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 3.7843 3.1533 2.1391 36 1 3.8651 4.6923 1.2480 37 1 2.3603 3.7420 1.2481 38 1 5.8557 2.5191 0.9544 39 1 5.5066 4.6985 -1.2302 40 1 6.6231 4.7254 0.2048 41 1 8.5444 5.3682 -2.0907 42 1 9.1745 4.8147 -0.5207 43 1 11.3770 3.9168 -0.3311 44 1 13.6137 3.6427 -1.3182 45 1 13.9637 3.9906 -3.7286 46 1 12.0774 4.6073 -5.1755 47 1 11.0547 6.7751 -6.5922 48 1 6.4358 1.1352 -0.9841 49 1 5.3711 2.1140 -2.0849 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874728085.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:10 Heat of formation + Delta-G solvation = -98.281998 kcal Electronic energy + Delta-G solvation = -29897.592523 eV Core-core repulsion = 25789.502643 eV Total energy + Delta-G solvation = -4108.089880 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.97375 -40.99993 -39.70285 -38.57074 -37.56906 -35.51248 -34.76337 -33.45928 -32.46149 -31.37189 -30.26114 -28.11756 -27.27055 -26.77359 -25.73527 -24.14866 -22.89770 -22.79550 -21.62489 -20.91048 -19.88795 -19.06690 -18.66873 -17.90253 -17.79835 -17.47683 -17.33664 -16.60955 -16.50312 -16.09443 -15.69458 -15.45544 -15.34768 -14.79301 -14.56496 -14.47543 -14.38302 -13.91927 -13.72302 -13.55114 -13.45974 -13.34041 -13.22277 -13.04411 -12.91541 -12.88072 -12.75969 -12.66941 -12.51451 -12.48940 -12.46138 -12.14519 -12.00612 -11.82682 -11.50535 -11.33821 -11.24549 -11.22189 -11.02790 -10.67912 -9.65422 -9.24216 -9.17400 -8.60594 -6.30450 0.97564 1.11180 1.19604 1.34109 1.45775 1.52627 1.64182 1.76909 2.01489 2.19147 2.76954 3.25668 3.54167 3.62002 3.76895 3.94069 4.00766 4.08867 4.12332 4.15799 4.29219 4.34316 4.36726 4.41440 4.44135 4.52565 4.60324 4.63228 4.68523 4.72093 4.78510 4.84320 4.93406 4.99110 4.99781 5.04393 5.12012 5.16572 5.18282 5.24803 5.35268 5.39139 5.51307 5.53617 5.76225 6.02715 6.15287 6.19904 6.40791 6.71074 6.74242 6.78050 6.98001 7.09857 7.33990 8.36126 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013279 B = 0.002532 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.092472 B =11054.376764 C =12253.995106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.052 3.948 3 O -0.357 6.357 4 C 0.462 3.538 5 O -0.538 6.538 6 C -0.068 4.068 7 H 0.135 0.865 8 C -0.138 4.138 9 C -0.087 4.087 10 C 0.114 3.886 11 N -0.660 5.660 12 C 0.534 3.466 13 O -0.585 6.585 14 C -0.057 4.057 15 C -0.192 4.192 16 C -0.092 4.092 17 C -0.243 4.243 18 C -0.117 4.117 19 C -0.194 4.194 20 C 0.095 3.905 21 C -0.482 4.482 22 H 0.067 0.933 23 C 0.036 3.964 24 N -0.825 5.825 25 Si 0.972 3.028 26 H -0.250 1.250 27 H -0.267 1.267 28 H -0.272 1.272 29 C 0.107 3.893 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.097 0.903 42 H 0.111 0.889 43 H 0.116 0.884 44 H 0.116 0.884 45 H 0.106 0.894 46 H 0.097 0.903 47 H 0.287 0.713 48 H 0.054 0.946 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.039 -1.674 13.811 26.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.021 4.021 3 O -0.274 6.274 4 C 0.306 3.694 5 O -0.427 6.427 6 C -0.087 4.087 7 H 0.153 0.847 8 C -0.195 4.195 9 C -0.106 4.106 10 C -0.007 4.007 11 N -0.397 5.397 12 C 0.326 3.674 13 O -0.464 6.464 14 C -0.096 4.096 15 C -0.193 4.193 16 C -0.110 4.110 17 C -0.262 4.262 18 C -0.135 4.135 19 C -0.213 4.213 20 C 0.092 3.908 21 C -0.512 4.512 22 H 0.085 0.915 23 C -0.179 4.179 24 N -0.451 5.451 25 Si 0.793 3.207 26 H -0.174 1.174 27 H -0.192 1.192 28 H -0.196 1.196 29 C -0.016 4.016 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.113 0.887 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.117 0.883 37 H 0.097 0.903 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.115 0.885 42 H 0.129 0.871 43 H 0.134 0.866 44 H 0.134 0.866 45 H 0.124 0.876 46 H 0.115 0.885 47 H 0.097 0.903 48 H 0.073 0.927 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -22.243 -2.309 13.287 26.012 hybrid contribution 0.184 -0.686 -1.162 1.362 sum -22.060 -2.996 12.125 25.350 Atomic orbital electron populations 1.21811 0.90413 1.04194 1.03842 1.23234 0.97077 0.79583 1.02212 1.86498 1.24067 1.33189 1.83621 1.24292 0.80618 0.93275 0.71190 1.90706 1.61084 1.44488 1.46421 1.21174 0.93117 0.89186 1.05224 0.84689 1.21781 1.02859 1.01269 0.93613 1.22958 0.92884 0.96250 0.98548 1.23581 0.88806 0.93011 0.95325 1.50260 1.11529 1.18108 1.59796 1.21010 0.80585 0.90159 0.75667 1.90654 1.69734 1.41609 1.44381 1.20169 0.93012 0.94122 1.02299 1.19587 0.94321 1.12081 0.93359 1.20739 0.92967 0.98819 0.98441 1.20730 0.97240 1.13243 0.95034 1.20952 0.97690 1.00214 0.94629 1.21299 0.94147 1.06959 0.98939 1.17755 0.93165 0.88329 0.91515 1.19565 0.94206 1.32175 1.05224 0.91457 1.26681 0.98620 0.92440 1.00129 1.69877 1.25687 1.23420 1.26136 0.85362 0.78553 0.79572 0.77204 1.17395 1.19164 1.19625 1.23168 0.87736 0.92788 0.97866 0.90869 0.91312 0.88666 0.92046 0.91475 0.92241 0.88340 0.90293 0.87199 0.87039 0.86919 0.88487 0.87109 0.86617 0.86584 0.87553 0.88473 0.90289 0.92703 0.90395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.29 71.98 0.74 -0.45 16 2 C 0.05 0.75 6.19 71.98 0.45 1.19 16 3 O -0.36 -5.91 10.12 -51.37 -0.52 -6.43 16 4 C 0.46 8.73 7.06 71.24 0.50 9.23 16 5 O -0.54 -14.20 14.66 21.96 0.32 -13.88 16 6 C -0.07 -0.84 2.60 -11.54 -0.03 -0.87 16 7 H 0.14 1.19 7.94 -2.39 -0.02 1.17 16 8 C -0.14 -0.98 9.12 71.98 0.66 -0.32 16 9 C -0.09 -1.53 2.90 -10.13 -0.03 -1.56 16 10 C 0.11 1.98 8.17 86.48 0.71 2.69 16 11 N -0.66 -20.73 3.61 -836.55 -3.02 -23.74 16 12 C 0.53 22.74 7.69 87.66 0.67 23.42 16 13 O -0.58 -31.74 16.76 -3.02 -0.05 -31.79 16 14 C -0.06 -2.29 4.93 29.10 0.14 -2.14 16 15 C -0.19 -9.67 4.43 -19.40 -0.09 -9.75 16 16 C -0.09 -4.31 9.66 22.22 0.21 -4.10 16 17 C -0.24 -11.53 10.05 22.46 0.23 -11.30 16 18 C -0.12 -5.95 10.02 22.22 0.22 -5.73 16 19 C -0.19 -11.10 8.68 22.73 0.20 -10.90 16 20 C 0.09 5.39 5.56 -21.29 -0.12 5.27 16 21 C -0.48 -26.90 8.14 23.46 0.19 -26.71 16 22 H 0.07 3.69 6.67 -2.91 -0.02 3.67 16 23 C 0.04 1.87 5.16 85.26 0.44 2.31 16 24 N -0.82 -44.49 10.97 21.83 0.24 -44.25 16 25 Si 0.97 39.80 29.59 68.60 2.03 41.83 16 26 H -0.25 -9.36 7.11 99.48 0.71 -8.65 16 27 H -0.27 -10.46 7.11 99.48 0.71 -9.76 16 28 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 29 C 0.11 3.00 6.92 86.48 0.60 3.60 16 30 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.06 0.97 8.13 -2.38 -0.02 0.95 16 34 H 0.07 0.97 8.13 -2.39 -0.02 0.95 16 35 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 37 H 0.08 0.48 8.11 -2.39 -0.02 0.47 16 38 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.11 1.45 7.96 -2.39 -0.02 1.43 16 40 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.10 3.85 7.06 -2.39 -0.02 3.83 16 42 H 0.11 3.55 8.05 -2.39 -0.02 3.53 16 43 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 44 H 0.12 4.69 8.06 -2.91 -0.02 4.66 16 45 H 0.11 4.81 8.06 -2.91 -0.02 4.78 16 46 H 0.10 5.78 6.22 -2.91 -0.02 5.77 16 47 H 0.29 13.97 8.30 -92.71 -0.77 13.20 16 48 H 0.05 1.85 8.05 -2.38 -0.02 1.84 16 49 H 0.08 2.10 8.10 -2.38 -0.02 2.08 16 Total: -1.00 -80.59 408.51 5.64 -74.96 By element: Atomic # 1 Polarization: 28.48 SS G_CDS: 0.94 Total: 29.42 kcal Atomic # 6 Polarization: -31.81 SS G_CDS: 5.70 Total: -26.12 kcal Atomic # 7 Polarization: -65.21 SS G_CDS: -2.78 Total: -67.99 kcal Atomic # 8 Polarization: -51.85 SS G_CDS: -0.25 Total: -52.10 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.83 kcal Total: -80.59 5.64 -74.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874728085.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.327 kcal (2) G-P(sol) polarization free energy of solvation -80.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds