Wall clock time and date at job start Wed Apr 1 2020 04:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50696 * 120.00259 * 2 1 4 4 C 1.50704 * 119.99834 * 180.02562 * 2 1 3 5 5 C 1.53003 * 109.47364 * 96.77596 * 4 2 1 6 6 H 1.08992 * 109.47199 * 305.95270 * 5 4 2 7 7 N 1.46500 * 109.46856 * 65.95401 * 5 4 2 8 8 C 1.34778 * 119.99653 * 243.22327 * 7 5 4 9 9 O 1.21276 * 120.00159 * 4.33509 * 8 7 5 10 10 C 1.50699 * 119.99622 * 184.33498 * 8 7 5 11 11 C 1.50698 * 109.47019 * 178.16236 * 10 8 7 12 12 C 1.37644 * 120.12757 * 266.53360 * 11 10 8 13 13 C 1.38610 * 120.24950 * 179.97438 * 12 11 10 14 14 C 1.38652 * 120.50301 * 0.02961 * 13 12 11 15 15 C 1.37597 * 120.25069 * 0.02562 * 14 13 12 16 16 C 1.40695 * 120.13070 * 86.25874 * 11 10 8 17 17 C 1.41401 * 120.24306 * 0.02562 * 16 11 10 18 18 H 1.07998 * 119.99539 * 329.39962 * 17 16 11 19 19 C 1.39943 * 119.99900 * 149.39957 * 17 16 11 20 20 N 1.30825 * 120.00391 * 349.75229 * 19 17 16 21 21 Si 1.86800 * 119.99890 * 169.75580 * 19 17 16 22 22 H 1.48499 * 109.47372 * 59.99457 * 21 19 17 23 23 H 1.48494 * 109.47246 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46718 * 299.99757 * 21 19 17 25 25 C 1.50699 * 109.47093 * 185.95146 * 5 4 2 26 26 O 1.20822 * 120.00230 * 240.00367 * 25 5 4 27 27 O 1.34232 * 119.99737 * 59.99862 * 25 5 4 28 28 C 1.45204 * 116.99581 * 179.97438 * 27 25 5 29 29 C 1.53000 * 109.46790 * 180.02562 * 28 27 25 30 30 H 1.07994 * 119.99492 * 359.97438 * 1 2 3 31 31 H 1.07994 * 119.99780 * 179.71986 * 1 2 3 32 32 H 1.08995 * 109.47048 * 89.44765 * 3 2 1 33 33 H 1.09004 * 109.47216 * 209.44522 * 3 2 1 34 34 H 1.09004 * 109.47384 * 329.44711 * 3 2 1 35 35 H 1.09002 * 109.47145 * 216.77961 * 4 2 1 36 36 H 1.09003 * 109.47019 * 336.77579 * 4 2 1 37 37 H 0.96998 * 120.00234 * 63.22526 * 7 5 4 38 38 H 1.09007 * 109.47267 * 298.15716 * 10 8 7 39 39 H 1.09004 * 109.47472 * 58.16033 * 10 8 7 40 40 H 1.08002 * 119.87317 * 0.02562 * 12 11 10 41 41 H 1.07996 * 119.74898 * 179.97438 * 13 12 11 42 42 H 1.08003 * 119.87708 * 179.97438 * 14 13 12 43 43 H 1.08003 * 120.13347 * 179.97438 * 15 14 13 44 44 H 0.96997 * 120.00316 * 180.02562 * 20 19 17 45 45 H 1.08995 * 109.47785 * 300.00449 * 28 27 25 46 46 H 1.09002 * 109.47136 * 60.00987 * 28 27 25 47 47 H 1.09001 * 109.47328 * 60.00349 * 29 28 27 48 48 H 1.08997 * 109.47179 * 180.02562 * 29 28 27 49 49 H 1.08995 * 109.47604 * 300.00301 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0635 -1.3052 -0.0006 5 6 2.4659 -1.6612 -1.4332 6 1 1.5823 -1.6541 -2.0712 7 7 3.4330 -0.6779 -1.9273 8 6 3.1205 0.1049 -2.9790 9 8 2.0114 0.0510 -3.4667 10 6 4.1492 1.0471 -3.5490 11 6 3.5664 1.7683 -4.7369 12 6 3.7542 1.2719 -6.0069 13 6 3.2188 1.9329 -7.1013 14 6 2.4896 3.0999 -6.9310 15 6 2.2902 3.6150 -5.6708 16 6 2.8233 2.9485 -4.5517 17 6 2.6193 3.4651 -3.2513 18 1 2.5673 2.7947 -2.4061 19 6 2.4849 4.8448 -3.0596 20 7 2.7453 5.6700 -4.0407 21 14 1.9338 5.5081 -1.4026 22 1 2.9024 5.0931 -0.3562 23 1 1.8716 6.9907 -1.4588 24 1 0.5899 4.9678 -1.0753 25 6 3.0894 -3.0330 -1.4536 26 8 4.2249 -3.1749 -1.8412 27 8 2.3831 -4.0973 -1.0411 28 6 3.0471 -5.3878 -1.0889 29 6 2.0921 -6.4716 -0.5846 30 1 -0.5399 0.9353 0.0004 31 1 -0.5399 -0.9353 -0.0046 32 1 2.2367 1.6246 1.0276 33 1 3.0203 1.1722 -0.5052 34 1 1.4789 2.0623 -0.5224 35 1 2.9580 -1.2086 0.6148 36 1 1.4273 -2.0922 0.4043 37 1 4.2982 -0.5903 -1.4977 38 1 4.4377 1.7732 -2.7888 39 1 5.0265 0.4810 -3.8622 40 1 4.3202 0.3634 -6.1511 41 1 3.3714 1.5364 -8.0942 42 1 2.0773 3.6069 -7.7909 43 1 1.7223 4.5244 -5.5405 44 1 2.6525 6.6263 -3.9077 45 1 3.3376 -5.6092 -2.1159 46 1 3.9351 -5.3631 -0.4574 47 1 1.2043 -6.4963 -1.2165 48 1 2.5907 -7.4402 -0.6201 49 1 1.8012 -6.2505 0.4422 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881752835.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:42 Heat of formation + Delta-G solvation = -112.748139 kcal Electronic energy + Delta-G solvation = -31059.120156 eV Core-core repulsion = 26950.402977 eV Total energy + Delta-G solvation = -4108.717179 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.93902 -40.71677 -39.22414 -37.92273 -37.50480 -35.42943 -35.02421 -33.52879 -32.73455 -31.34064 -31.09252 -28.48948 -27.96065 -26.81772 -26.09730 -23.96520 -22.81164 -22.55272 -21.69861 -21.12368 -19.56788 -19.08094 -18.86277 -17.98893 -17.80789 -17.44003 -17.27210 -16.56931 -16.21096 -16.09971 -15.79554 -15.40443 -15.22068 -15.06012 -14.84484 -14.54415 -14.42484 -14.32740 -13.92486 -13.62950 -13.56013 -13.35516 -13.28775 -12.88022 -12.84643 -12.78244 -12.66374 -12.59230 -12.56247 -12.45209 -12.40048 -12.14632 -12.07161 -11.55135 -11.53715 -11.31421 -11.19186 -11.01192 -10.83045 -10.42030 -9.75986 -9.18188 -9.11451 -8.51331 -6.26522 0.95218 0.99895 1.12920 1.25954 1.37843 1.44818 1.47487 1.54497 1.87885 2.22916 2.34897 2.85041 3.46627 3.75830 3.84202 3.91186 4.01174 4.04704 4.07583 4.13421 4.24877 4.35096 4.40723 4.45843 4.60262 4.61793 4.71115 4.76044 4.79924 4.81488 4.83145 4.90399 4.93885 5.04943 5.07341 5.12654 5.18059 5.27354 5.33425 5.39136 5.40089 5.56548 5.74803 5.81378 5.99147 6.05929 6.20169 6.22922 6.45400 6.52459 6.59258 6.77735 7.04461 7.14136 7.34893 8.45215 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011629 B = 0.003663 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.238816 B = 7641.313638 C = 9399.269615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.126 4.126 3 C -0.125 4.125 4 C -0.076 4.076 5 C 0.158 3.842 6 H 0.119 0.881 7 N -0.707 5.707 8 C 0.530 3.470 9 O -0.559 6.559 10 C -0.071 4.071 11 C -0.180 4.180 12 C -0.096 4.096 13 C -0.238 4.238 14 C -0.120 4.120 15 C -0.186 4.186 16 C 0.099 3.901 17 C -0.477 4.477 18 H 0.081 0.919 19 C 0.035 3.965 20 N -0.837 5.837 21 Si 0.962 3.038 22 H -0.247 1.247 23 H -0.274 1.274 24 H -0.267 1.267 25 C 0.462 3.538 26 O -0.524 6.524 27 O -0.354 6.354 28 C 0.052 3.948 29 C -0.146 4.146 30 H 0.088 0.912 31 H 0.115 0.885 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.039 0.961 35 H 0.096 0.904 36 H 0.112 0.888 37 H 0.416 0.584 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.111 0.889 41 H 0.113 0.887 42 H 0.104 0.896 43 H 0.096 0.904 44 H 0.282 0.718 45 H 0.063 0.937 46 H 0.076 0.924 47 H 0.065 0.935 48 H 0.100 0.900 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.775 -17.105 12.836 21.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.126 4.126 3 C -0.182 4.182 4 C -0.114 4.114 5 C 0.051 3.949 6 H 0.136 0.864 7 N -0.362 5.362 8 C 0.319 3.681 9 O -0.435 6.435 10 C -0.110 4.110 11 C -0.182 4.182 12 C -0.114 4.114 13 C -0.257 4.257 14 C -0.138 4.138 15 C -0.205 4.205 16 C 0.096 3.904 17 C -0.507 4.507 18 H 0.099 0.901 19 C -0.178 4.178 20 N -0.464 5.464 21 Si 0.783 3.217 22 H -0.171 1.171 23 H -0.199 1.199 24 H -0.191 1.191 25 C 0.304 3.696 26 O -0.412 6.412 27 O -0.270 6.270 28 C -0.021 4.021 29 C -0.203 4.203 30 H 0.106 0.894 31 H 0.134 0.866 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.058 0.942 35 H 0.115 0.885 36 H 0.130 0.870 37 H 0.254 0.746 38 H 0.121 0.879 39 H 0.125 0.875 40 H 0.129 0.871 41 H 0.131 0.869 42 H 0.122 0.878 43 H 0.115 0.885 44 H 0.093 0.907 45 H 0.082 0.918 46 H 0.094 0.906 47 H 0.084 0.916 48 H 0.118 0.882 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.347 -16.992 12.304 20.982 hybrid contribution 0.142 0.826 0.115 0.846 sum 0.489 -16.166 12.418 20.391 Atomic orbital electron populations 1.23841 0.95416 1.02367 1.01382 1.21550 0.95422 0.95247 1.00337 1.20965 1.00458 0.94647 1.02112 1.20952 1.02060 0.95961 0.92419 1.20453 0.93338 0.81849 0.99297 0.86358 1.45652 1.19952 1.36931 1.33697 1.21049 0.88790 0.79972 0.78306 1.90674 1.24087 1.67983 1.60800 1.20293 0.96542 0.96858 0.97343 1.19527 1.05437 0.99949 0.93297 1.20729 0.99644 0.98325 0.92744 1.20704 1.07908 0.99170 0.97959 1.20952 0.99740 0.96681 0.96449 1.21335 1.04481 1.01757 0.92956 1.17732 0.88153 0.90702 0.93768 1.19650 1.44970 0.92202 0.93922 0.90136 1.26616 0.92333 0.97225 1.01593 1.69870 1.37219 1.04648 1.34667 0.85548 0.79987 0.77445 0.78695 1.17089 1.19890 1.19148 1.24136 0.84606 0.87780 0.73047 1.90657 1.20038 1.86601 1.43924 1.86510 1.46457 1.17172 1.76853 1.23350 0.97132 0.79371 1.02290 1.21829 0.99471 0.96465 1.02567 0.89390 0.86645 0.90122 0.91635 0.94192 0.88513 0.86956 0.74640 0.87894 0.87492 0.87072 0.86886 0.87774 0.88549 0.90713 0.91848 0.90585 0.91594 0.88168 0.90764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.82 13.89 67.78 0.94 -3.88 16 2 C -0.13 -3.15 5.18 -16.49 -0.09 -3.23 16 3 C -0.13 -3.53 9.78 71.23 0.70 -2.83 16 4 C -0.08 -1.50 5.03 29.85 0.15 -1.35 16 5 C 0.16 3.99 2.82 44.25 0.12 4.12 16 6 H 0.12 3.56 6.92 -2.39 -0.02 3.55 16 7 N -0.71 -19.80 2.84 -446.11 -1.27 -21.07 16 8 C 0.53 19.78 6.99 87.66 0.61 20.40 16 9 O -0.56 -25.90 15.38 -3.02 -0.05 -25.95 16 10 C -0.07 -2.71 5.20 29.10 0.15 -2.56 16 11 C -0.18 -8.65 4.43 -19.40 -0.09 -8.74 16 12 C -0.10 -4.41 9.67 22.22 0.21 -4.20 16 13 C -0.24 -11.02 10.05 22.46 0.23 -10.80 16 14 C -0.12 -5.96 10.02 22.22 0.22 -5.74 16 15 C -0.19 -10.29 8.65 22.73 0.20 -10.10 16 16 C 0.10 5.35 5.53 -21.29 -0.12 5.23 16 17 C -0.48 -25.05 8.02 23.46 0.19 -24.86 16 18 H 0.08 4.02 6.40 -2.91 -0.02 4.00 16 19 C 0.04 1.79 5.25 85.26 0.45 2.24 16 20 N -0.84 -44.55 10.92 21.83 0.24 -44.31 16 21 Si 0.96 38.40 29.57 68.60 2.03 40.43 16 22 H -0.25 -9.10 7.11 99.48 0.71 -8.40 16 23 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 24 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 25 C 0.46 11.36 7.32 71.24 0.52 11.88 16 26 O -0.52 -15.18 16.13 21.98 0.35 -14.83 16 27 O -0.35 -7.30 10.01 -51.43 -0.51 -7.82 16 28 C 0.05 0.82 6.19 71.98 0.45 1.27 16 29 C -0.15 -1.43 10.29 71.98 0.74 -0.69 16 30 H 0.09 2.36 8.04 -2.91 -0.02 2.33 16 31 H 0.12 2.37 7.98 -2.91 -0.02 2.34 16 32 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.06 1.84 6.21 -2.38 -0.01 1.83 16 34 H 0.04 1.36 7.68 -2.38 -0.02 1.34 16 35 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.11 1.76 7.79 -2.39 -0.02 1.74 16 37 H 0.42 9.53 8.76 -92.71 -0.81 8.72 16 38 H 0.10 3.84 7.07 -2.38 -0.02 3.82 16 39 H 0.11 3.41 8.06 -2.38 -0.02 3.39 16 40 H 0.11 4.40 8.06 -2.91 -0.02 4.38 16 41 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 42 H 0.10 4.62 8.06 -2.91 -0.02 4.60 16 43 H 0.10 5.61 6.33 -2.91 -0.02 5.59 16 44 H 0.28 13.84 8.30 -92.71 -0.77 13.07 16 45 H 0.06 1.09 8.13 -2.39 -0.02 1.07 16 46 H 0.08 1.12 8.13 -2.39 -0.02 1.10 16 47 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 49 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -69.51 411.15 6.53 -62.98 By element: Atomic # 1 Polarization: 44.25 SS G_CDS: 0.15 Total: 44.40 kcal Atomic # 6 Polarization: -39.43 SS G_CDS: 5.59 Total: -33.84 kcal Atomic # 7 Polarization: -64.35 SS G_CDS: -1.03 Total: -65.38 kcal Atomic # 8 Polarization: -48.39 SS G_CDS: -0.21 Total: -48.60 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 2.03 Total: 40.43 kcal Total: -69.51 6.53 -62.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881752835.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.767 kcal (2) G-P(sol) polarization free energy of solvation -69.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds