Wall clock time and date at job start Wed Apr 1 2020 03:54:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09004 * 109.46856 * 2 1
4 4 O 1.45201 * 109.46808 * 119.99516 * 2 1 3
5 5 C 1.34229 * 117.00245 * 270.00147 * 4 2 1
6 6 O 1.20828 * 120.00041 * 0.02562 * 5 4 2
7 7 C 1.50698 * 120.00026 * 180.02562 * 5 4 2
8 8 H 1.08997 * 115.54658 * 332.13694 * 7 5 4
9 9 C 1.53004 * 117.49799 * 186.43315 * 7 5 4
10 10 C 1.52999 * 60.00004 * 252.50867 * 9 7 5
11 11 C 1.52995 * 117.52031 * 252.52030 * 10 9 7
12 12 C 1.50702 * 117.49817 * 107.48731 * 10 9 7
13 13 C 1.38239 * 119.99698 * 227.90772 * 12 10 9
14 14 C 1.38239 * 119.99563 * 179.76811 * 13 12 10
15 15 C 1.38240 * 119.99888 * 0.50649 * 14 13 12
16 16 C 1.38235 * 119.99923 * 359.75088 * 15 14 13
17 17 C 1.38228 * 120.00201 * 359.97438 * 16 15 14
18 18 C 1.50690 * 109.47413 * 239.99801 * 2 1 3
19 19 O 1.21283 * 120.00143 * 250.34982 * 18 2 1
20 20 N 1.34781 * 119.99902 * 70.35582 * 18 2 1
21 21 C 1.46497 * 120.00144 * 4.86243 * 20 18 2
22 22 C 1.46501 * 119.99529 * 184.86397 * 20 18 2
23 23 C 1.50701 * 109.47349 * 90.00281 * 22 20 18
24 24 H 1.08001 * 119.99530 * 359.97438 * 23 22 20
25 25 C 1.37877 * 120.00137 * 180.02562 * 23 22 20
26 26 N 1.31518 * 119.99914 * 359.97438 * 25 23 22
27 27 Si 1.86797 * 119.99918 * 179.97438 * 25 23 22
28 28 H 1.48498 * 109.47163 * 359.97438 * 27 25 23
29 29 H 1.48499 * 109.47217 * 119.99810 * 27 25 23
30 30 H 1.48500 * 109.46932 * 239.99719 * 27 25 23
31 31 H 1.09000 * 109.47125 * 66.84343 * 1 2 3
32 32 H 1.08998 * 109.47710 * 306.84002 * 1 2 3
33 33 H 1.09000 * 109.47109 * 186.83728 * 1 2 3
34 34 H 1.09003 * 117.50142 * 359.97438 * 9 7 5
35 35 H 1.08996 * 117.50008 * 145.01820 * 9 7 5
36 36 H 1.08994 * 109.47534 * 128.62466 * 11 10 9
37 37 H 1.09004 * 109.47283 * 248.63224 * 11 10 9
38 38 H 1.09006 * 109.47103 * 8.62543 * 11 10 9
39 39 H 1.07995 * 120.00287 * 0.02562 * 13 12 10
40 40 H 1.08000 * 120.00076 * 180.23411 * 14 13 12
41 41 H 1.08001 * 119.99662 * 179.71995 * 15 14 13
42 42 H 1.08005 * 119.99554 * 179.97438 * 16 15 14
43 43 H 1.08003 * 120.00406 * 179.97438 * 17 16 15
44 44 H 1.08995 * 109.46874 * 95.39152 * 21 20 18
45 45 H 1.09005 * 109.46797 * 215.39123 * 21 20 18
46 46 H 1.08994 * 109.46990 * 335.39332 * 21 20 18
47 47 H 1.09007 * 109.46839 * 209.99666 * 22 20 18
48 48 H 1.08994 * 109.47487 * 329.99420 * 22 20 18
49 49 H 0.97000 * 119.99900 * 180.02562 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 8 2.0139 -0.6844 1.1856
5 6 2.2170 0.0641 2.2812
6 8 1.9972 1.2519 2.2506
7 6 2.7191 -0.5769 3.5493
8 1 2.4578 -1.6269 3.6806
9 6 2.7873 0.2969 4.8034
10 6 4.0749 -0.1137 4.0862
11 6 4.9602 -1.1598 4.7662
12 6 4.8060 0.9486 3.3063
13 6 5.2300 0.6902 2.0162
14 6 5.8963 1.6663 1.2991
15 6 6.1480 2.8971 1.8760
16 6 5.7287 3.1536 3.1680
17 6 5.0573 2.1796 3.8830
18 6 2.0324 -0.7104 -1.2303
19 8 2.5675 -1.7940 -1.1289
20 7 1.8871 -0.1415 -2.4435
21 6 1.3383 1.2121 -2.5569
22 6 2.2780 -0.8768 -3.6488
23 6 1.1011 -1.6684 -4.1582
24 1 0.1566 -1.6281 -3.6360
25 6 1.2305 -2.4448 -5.2902
26 7 2.3808 -2.4943 -5.9257
27 14 -0.2281 -3.4266 -5.9211
28 1 -1.3973 -3.2016 -5.0337
29 1 -0.5611 -2.9876 -7.3001
30 1 0.1147 -4.8714 -5.9308
31 1 -0.3633 0.4041 -0.9449
32 1 -0.3634 0.6161 0.8224
33 1 -0.3633 -1.0204 0.1223
34 1 2.4694 1.3354 4.7113
35 1 2.5708 -0.1782 5.7602
36 1 5.1876 -1.9580 4.0597
37 1 5.8876 -0.6918 5.0965
38 1 4.4362 -1.5750 5.6271
39 1 5.0369 -0.2727 1.5670
40 1 6.2243 1.4658 0.2898
41 1 6.6726 3.6581 1.3173
42 1 5.9256 4.1151 3.6187
43 1 4.7300 2.3798 4.8925
44 1 2.1550 1.9318 -2.6119
45 1 0.7300 1.2831 -3.4586
46 1 0.7217 1.4283 -1.6845
47 1 2.6011 -0.1724 -4.4154
48 1 3.0968 -1.5556 -3.4108
49 1 2.4717 -3.0402 -6.7223
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000884624222.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:54:28
Heat of formation + Delta-G solvation = -63.380370 kcal
Electronic energy + Delta-G solvation = -30936.392611 eV
Core-core repulsion = 26829.816179 eV
Total energy + Delta-G solvation = -4106.576432 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.177 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-41.04849 -39.74419 -38.80566 -37.43606 -36.06088 -34.89420 -32.86318 -31.62166
-30.98687 -30.84944 -28.95654 -27.75375 -26.15713 -25.48039 -24.03335 -23.32098
-22.66279 -22.12142 -20.54487 -19.64964 -18.79402 -18.10197 -16.97988 -16.57764
-16.43287 -16.03035 -15.98188 -15.27187 -15.02593 -14.88442 -14.54732 -14.52633
-14.28622 -13.74795 -13.64029 -13.47862 -13.24143 -13.02157 -12.85735 -12.72444
-12.41034 -12.36864 -12.16898 -12.07964 -12.00796 -11.65947 -11.38034 -11.26372
-11.24164 -11.22884 -10.89595 -10.72826 -10.67800 -10.57917 -10.52293 -10.18944
-10.15737 -9.64589 -8.98707 -8.89926 -8.83946 -8.46704 -7.71888 -6.07408
-4.12561 1.22526 1.33015 2.06385 2.46772 3.24536 3.28195 3.36138
3.40227 3.41689 3.67037 3.87252 4.24933 4.38421 4.40076 4.42641
4.69840 4.83249 4.88305 4.91857 4.93668 5.05748 5.07362 5.14455
5.27325 5.31345 5.35604 5.40168 5.42673 5.50081 5.55994 5.57729
5.68758 5.71591 5.77308 5.84677 5.88637 5.93895 5.95808 6.09580
6.24653 6.37657 6.45236 6.48220 6.49999 6.90838 6.98914 7.39366
7.46459 7.80990 7.89156 8.18708 8.29547 8.83646 8.98872 9.52641
11.00748
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.015619 B = 0.002793 C = 0.002649
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1792.266164 B =10024.092163 C =10568.374202
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.168 4.168
2 C 0.072 3.928
3 H 0.102 0.898
4 O -0.322 6.322
5 C 0.491 3.509
6 O -0.504 6.504
7 C -0.157 4.157
8 H 0.138 0.862
9 C -0.132 4.132
10 C -0.055 4.055
11 C -0.113 4.113
12 C -0.054 4.054
13 C -0.108 4.108
14 C -0.114 4.114
15 C -0.119 4.119
16 C -0.121 4.121
17 C -0.103 4.103
18 C 0.510 3.490
19 O -0.521 6.521
20 N -0.596 5.596
21 C 0.070 3.930
22 C 0.246 3.754
23 C -0.529 4.529
24 H 0.059 0.941
25 C 0.061 3.939
26 N -0.893 5.893
27 Si 0.899 3.101
28 H -0.273 1.273
29 H -0.283 1.283
30 H -0.282 1.282
31 H 0.089 0.911
32 H 0.068 0.932
33 H 0.074 0.926
34 H 0.111 0.889
35 H 0.112 0.888
36 H 0.069 0.931
37 H 0.068 0.932
38 H 0.066 0.934
39 H 0.122 0.878
40 H 0.124 0.876
41 H 0.121 0.879
42 H 0.121 0.879
43 H 0.121 0.879
44 H 0.048 0.952
45 H 0.077 0.923
46 H 0.064 0.936
47 H 0.035 0.965
48 H 0.046 0.954
49 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.646 10.508 22.031 24.679
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.225 4.225
2 C 0.013 3.987
3 H 0.119 0.881
4 O -0.237 6.237
5 C 0.334 3.666
6 O -0.392 6.392
7 C -0.176 4.176
8 H 0.156 0.844
9 C -0.169 4.169
10 C -0.055 4.055
11 C -0.170 4.170
12 C -0.054 4.054
13 C -0.126 4.126
14 C -0.132 4.132
15 C -0.137 4.137
16 C -0.139 4.139
17 C -0.121 4.121
18 C 0.295 3.705
19 O -0.396 6.396
20 N -0.330 5.330
21 C -0.074 4.074
22 C 0.127 3.873
23 C -0.568 4.568
24 H 0.077 0.923
25 C -0.141 4.141
26 N -0.532 5.532
27 Si 0.726 3.274
28 H -0.198 1.198
29 H -0.209 1.209
30 H -0.208 1.208
31 H 0.107 0.893
32 H 0.087 0.913
33 H 0.093 0.907
34 H 0.130 0.870
35 H 0.131 0.869
36 H 0.088 0.912
37 H 0.087 0.913
38 H 0.085 0.915
39 H 0.141 0.859
40 H 0.142 0.858
41 H 0.139 0.861
42 H 0.139 0.861
43 H 0.139 0.861
44 H 0.067 0.933
45 H 0.096 0.904
46 H 0.082 0.918
47 H 0.053 0.947
48 H 0.064 0.936
49 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges 3.954 10.191 21.848 24.430
hybrid contribution -0.987 -0.418 -0.733 1.298
sum 2.967 9.773 21.114 23.455
Atomic orbital electron populations
1.22243 0.92281 1.04133 1.03882 1.22617 0.95866 0.97350 0.82852
0.88073 1.86604 1.76392 1.41291 1.19388 1.22455 0.74054 0.85342
0.84725 1.90629 1.48100 1.16323 1.84165 1.21947 1.02863 1.01680
0.91073 0.84400 1.23355 0.98360 1.01065 0.94087 1.20278 0.87685
0.97537 1.00046 1.21397 0.98895 0.96838 0.99901 1.18921 0.98932
0.93638 0.93945 1.21093 0.97880 0.99792 0.93844 1.21183 0.98575
0.93513 0.99963 1.21171 1.00057 0.97036 0.95447 1.21086 0.98938
0.99018 0.94876 1.20873 0.98738 0.92632 0.99818 1.19765 0.80672
0.86310 0.83796 1.90693 1.42548 1.20690 1.85693 1.48055 1.62153
1.15749 1.06999 1.21907 0.98617 0.83879 1.02997 1.19346 0.96783
0.91685 0.79442 1.21465 0.97403 1.27585 1.10298 0.92305 1.24940
0.96148 0.96484 0.96511 1.69944 1.23811 1.40306 1.19161 0.86430
0.82461 0.79981 0.78480 1.19771 1.20933 1.20832 0.89268 0.91313
0.90659 0.87035 0.86933 0.91198 0.91283 0.91513 0.85949 0.85824
0.86121 0.86117 0.86129 0.93306 0.90427 0.91768 0.94680 0.93596
0.92708
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.49 9.09 37.16 0.34 -2.15 16
2 C 0.07 1.24 2.13 -27.89 -0.06 1.19 16
3 H 0.10 1.66 6.48 -51.93 -0.34 1.32 16
4 O -0.32 -5.62 9.44 -45.84 -0.43 -6.05 16
5 C 0.49 7.35 6.13 36.00 0.22 7.57 16
6 O -0.50 -8.17 15.04 -18.75 -0.28 -8.45 16
7 C -0.16 -1.76 6.01 -91.77 -0.55 -2.31 16
8 H 0.14 1.33 8.14 -51.93 -0.42 0.91 16
9 C -0.13 -1.15 9.07 -26.73 -0.24 -1.39 16
10 C -0.06 -0.55 2.18 -155.66 -0.34 -0.89 16
11 C -0.11 -0.87 9.84 37.15 0.37 -0.50 16
12 C -0.05 -0.64 4.00 -104.62 -0.42 -1.06 16
13 C -0.11 -1.44 8.71 -39.58 -0.34 -1.79 16
14 C -0.11 -1.43 10.05 -39.58 -0.40 -1.83 16
15 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16
16 C -0.12 -1.24 10.05 -39.59 -0.40 -1.64 16
17 C -0.10 -1.09 9.38 -39.59 -0.37 -1.46 16
18 C 0.51 11.13 7.01 -10.99 -0.08 11.05 16
19 O -0.52 -13.61 16.09 -13.88 -0.22 -13.83 16
20 N -0.60 -12.82 2.86 -182.96 -0.52 -13.35 16
21 C 0.07 1.13 9.80 59.85 0.59 1.71 16
22 C 0.25 6.45 5.22 -5.19 -0.03 6.42 16
23 C -0.53 -14.90 9.39 -34.44 -0.32 -15.22 16
24 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16
25 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16
26 N -0.89 -26.43 13.29 55.43 0.74 -25.70 16
27 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16
28 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16
29 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16
30 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16
31 H 0.09 1.25 5.89 -51.93 -0.31 0.94 16
32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16
33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16
34 H 0.11 1.09 7.60 -51.93 -0.39 0.69 16
35 H 0.11 0.66 8.05 -51.93 -0.42 0.24 16
36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16
37 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16
38 H 0.07 0.39 7.90 -51.93 -0.41 -0.03 16
39 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16
40 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16
41 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16
42 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16
43 H 0.12 1.03 7.99 -52.48 -0.42 0.61 16
44 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16
45 H 0.08 1.25 8.11 -51.93 -0.42 0.83 16
46 H 0.06 0.87 4.35 -51.93 -0.23 0.64 16
47 H 0.04 0.92 8.07 -51.92 -0.42 0.50 16
48 H 0.05 1.36 7.36 -51.93 -0.38 0.97 16
49 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16
LS Contribution 410.08 15.07 6.18 6.18
Total: -1.00 -34.93 410.08 -9.60 -44.53
By element:
Atomic # 1 Polarization: 9.79 SS G_CDS: -7.50 Total: 2.29 kcal
Atomic # 6 Polarization: 0.19 SS G_CDS: -2.53 Total: -2.34 kcal
Atomic # 7 Polarization: -39.26 SS G_CDS: 0.21 Total: -39.04 kcal
Atomic # 8 Polarization: -27.39 SS G_CDS: -0.94 Total: -28.33 kcal
Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal
Total LS contribution 6.18 Total: 6.18 kcal
Total: -34.93 -9.60 -44.53 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000884624222.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -18.847 kcal
(2) G-P(sol) polarization free energy of solvation -34.931 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.777 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.603 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.534 kcal
(6) G-S(sol) free energy of system = (1) + (5) -63.380 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds